Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:53:27 (2742183): wrapper (7.7.26015): starting
09:53:27 (2742183): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 09:53:27] Arguments: --nthreads 12
[2025-11-23 09:53:27] Threads: 12
[2025-11-23 09:53:27] Checking for CVMFS
[2025-11-23 09:53:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 09:53:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 09:53:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 09:53:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 09:53:27] 2.13.3.0 9060 21813 388536 153202 2 90 24624115 46080001 7301 130560 0 124776150 99.872 44924675 26071 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-11-23 09:53:27] CVMFS is ok
[2025-11-23 09:53:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 09:53:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 09:53:27] Further information can be found at the LHC@home message board.
[2025-11-23 09:53:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 09:53:27] Checking for apptainer binary...
[2025-11-23 09:53:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 09:53:27] Running /usr/bin/apptainer --version
[2025-11-23 09:53:27] apptainer version 1.4.3-1.el9
[2025-11-23 09:53:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 09:53:27] mff2104.farm.particle.cz
[2025-11-23 09:53:27] apptainer works
[2025-11-23 09:53:27] Set ATHENA_PROC_NUMBER=12
[2025-11-23 09:53:27] Set ATHENA_CORE_NUMBER=12
[2025-11-23 09:53:27] Starting ATLAS job with PandaID=6894267738
[2025-11-23 09:53:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 15:36:22]  *** The last 200 lines of the pilot log: ***
[2025-11-23 15:36:22] 2025-11-23 14:35:48,024 | INFO     | monitor loop #1408: job 0:6894267738 is in state 'finished'
[2025-11-23 15:36:22] 2025-11-23 14:35:48,024 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 15:36:22] 2025-11-23 14:35:48,782 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 15:36:22] 2025-11-23 14:35:48,797 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2752.3908333333334
[2025-11-23 15:36:22] 2025-11-23 14:35:48,814 | INFO     | using path: /scratch/.boinc/slots/0/PanDA_Pilot-6894267738/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 15:36:22] 2025-11-23 14:35:48,815 | INFO     | extracted standard info from prmon json
[2025-11-23 15:36:22] 2025-11-23 14:35:48,815 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 15:36:22] 2025-11-23 14:35:48,815 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 15:36:22] 2025-11-23 14:35:48,821 | INFO     | fitting pss+swap vs Time
[2025-11-23 15:36:22] 2025-11-23 14:35:48,821 | INFO     | sum of square deviations: 11762115435.57143
[2025-11-23 15:36:22] 2025-11-23 14:35:48,824 | INFO     | sum of deviations: 255424107384.6072
[2025-11-23 15:36:22] 2025-11-23 14:35:48,824 | INFO     | mean x: 1763898268.5357144
[2025-11-23 15:36:22] 2025-11-23 14:35:48,824 | INFO     | mean y: 3442851.407738095
[2025-11-23 15:36:22] 2025-11-23 14:35:48,824 | INFO     | intersect: -38301073306.9223
[2025-11-23 15:36:22] 2025-11-23 14:35:48,825 | INFO     | chi2: 4.92883682616242
[2025-11-23 15:36:22] 2025-11-23 14:35:48,825 | INFO     | sum of square deviations: 11244890940.126848
[2025-11-23 15:36:22] 2025-11-23 14:35:48,828 | INFO     | sum of deviations: 370073692532.36255
[2025-11-23 15:36:22] 2025-11-23 14:35:48,828 | INFO     | mean x: 1763898116.0513594
[2025-11-23 15:36:22] 2025-11-23 14:35:48,828 | INFO     | mean y: 3476594.8610271905
[2025-11-23 15:36:22] 2025-11-23 14:35:48,828 | INFO     | intersect: -58047089883.16661
[2025-11-23 15:36:22] 2025-11-23 14:35:48,829 | INFO     | chi2: 2.444360517908283
[2025-11-23 15:36:22] 2025-11-23 14:35:48,829 | INFO     | current chi2=2.444360517908283 (change=50.40694987236053 %)
[2025-11-23 15:36:22] 2025-11-23 14:35:48,829 | INFO     | sum of square deviations: 10743001878.392683
[2025-11-23 15:36:22] 2025-11-23 14:35:48,832 | INFO     | sum of deviations: 381156242792.8098
[2025-11-23 15:36:22] 2025-11-23 14:35:48,832 | INFO     | mean x: 1763897963.5582821
[2025-11-23 15:36:22] 2025-11-23 14:35:48,832 | INFO     | mean y: 3479899.588957055
[2025-11-23 15:36:22] 2025-11-23 14:35:48,832 | INFO     | intersect: -62578722735.22551
[2025-11-23 15:36:22] 2025-11-23 14:35:48,833 | INFO     | chi2: 2.2562967512138505
[2025-11-23 15:36:22] 2025-11-23 14:35:48,833 | INFO     | current chi2=2.2562967512138505 (change=7.693781883507292 %)
[2025-11-23 15:36:22] 2025-11-23 14:35:48,833 | INFO     | right removable region: 325
[2025-11-23 15:36:22] 2025-11-23 14:35:48,833 | INFO     | sum of square deviations: 11244719288.320158
[2025-11-23 15:36:22] 2025-11-23 14:35:48,836 | INFO     | sum of deviations: 151147597701.01498
[2025-11-23 15:36:22] 2025-11-23 14:35:48,836 | INFO     | mean x: 1763898421.0453172
[2025-11-23 15:36:22] 2025-11-23 14:35:48,836 | INFO     | mean y: 3473457.332326284
[2025-11-23 15:36:22] 2025-11-23 14:35:48,837 | INFO     | intersect: -23706234370.282257
[2025-11-23 15:36:22] 2025-11-23 14:35:48,837 | INFO     | chi2: 2.810288652857019
[2025-11-23 15:36:22] 2025-11-23 14:35:48,837 | INFO     | current chi2=2.810288652857019 (change=42.982720833038755 %)
[2025-11-23 15:36:22] 2025-11-23 14:35:48,837 | INFO     | sum of square deviations: 10742779720.80982
[2025-11-23 15:36:22] 2025-11-23 14:35:48,840 | INFO     | sum of deviations: 124255634865.06743
[2025-11-23 15:36:22] 2025-11-23 14:35:48,840 | INFO     | mean x: 1763898573.5460122
[2025-11-23 15:36:22] 2025-11-23 14:35:48,840 | INFO     | mean y: 3481614.1288343556
[2025-11-23 15:36:22] 2025-11-23 14:35:48,840 | INFO     | intersect: -20398531904.679928
[2025-11-23 15:36:22] 2025-11-23 14:35:48,841 | INFO     | chi2: 2.7487584250565402
[2025-11-23 15:36:22] 2025-11-23 14:35:48,841 | INFO     | current chi2=2.7487584250565402 (change=2.1894629129262366 %)
[2025-11-23 15:36:22] 2025-11-23 14:35:48,841 | INFO     | left removable region: 20
[2025-11-23 15:36:22] 2025-11-23 14:35:48,841 | INFO     | sum of square deviations: 8797681465.554113
[2025-11-23 15:36:22] 2025-11-23 14:35:48,844 | INFO     | sum of deviations: 216028819909.4099
[2025-11-23 15:36:22] 2025-11-23 14:35:48,844 | INFO     | mean x: 1763898543.0688524
[2025-11-23 15:36:22] 2025-11-23 14:35:48,844 | INFO     | mean y: 3531457.8852459015
[2025-11-23 15:36:22] 2025-11-23 14:35:48,844 | INFO     | intersect: -43309348440.192696
[2025-11-23 15:36:22] 2025-11-23 14:35:48,845 | INFO     | chi2: 0.03540936504354786
[2025-11-23 15:36:22] 2025-11-23 14:35:48,845 | INFO     | current memory leak: 24.56 B/s (using 305 data points, chi2=0.04)
[2025-11-23 15:36:22] 2025-11-23 14:35:48,845 | INFO     | could have reported an average CPU frequency of 2725 MHz (15 samples)
[2025-11-23 15:36:22] 2025-11-23 14:35:48,845 | INFO     | ..............................
[2025-11-23 15:36:22] 2025-11-23 14:35:48,845 | INFO     | . Timing measurements:
[2025-11-23 15:36:22] 2025-11-23 14:35:48,845 | INFO     | . get job = 0 s
[2025-11-23 15:36:22] 2025-11-23 14:35:48,846 | INFO     | . initial setup = 1 s
[2025-11-23 15:36:22] 2025-11-23 14:35:48,846 | INFO     | . payload setup = 6 s
[2025-11-23 15:36:22] 2025-11-23 14:35:48,846 | INFO     | . stage-in = 0 s
[2025-11-23 15:36:22] 2025-11-23 14:35:48,846 | INFO     | . payload execution = 20489 s
[2025-11-23 15:36:22] 2025-11-23 14:35:48,846 | INFO     | . stage-out = 2 s
[2025-11-23 15:36:22] 2025-11-23 14:35:48,846 | INFO     | . log creation = 0 s
[2025-11-23 15:36:22] 2025-11-23 14:35:48,846 | INFO     | ..............................
[2025-11-23 15:36:22] 2025-11-23 14:35:48,872 | INFO     | time since job start (20528s) is within the limit (172800.0s)
[2025-11-23 15:36:22] 2025-11-23 14:35:49,300 | INFO     | 
[2025-11-23 15:36:22] 2025-11-23 14:35:49,300 | INFO     | job summary report
[2025-11-23 15:36:22] 2025-11-23 14:35:49,301 | INFO     | --------------------------------------------------
[2025-11-23 15:36:22] 2025-11-23 14:35:49,301 | INFO     | PanDA job id: 6894267738
[2025-11-23 15:36:22] 2025-11-23 14:35:49,301 | INFO     | task id: 47533967
[2025-11-23 15:36:22] 2025-11-23 14:35:49,301 | INFO     | errors: (none)
[2025-11-23 15:36:22] 2025-11-23 14:35:49,301 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 15:36:22] 2025-11-23 14:35:49,301 | INFO     | pilot state: finished 
[2025-11-23 15:36:22] 2025-11-23 14:35:49,301 | INFO     | transexitcode: 0
[2025-11-23 15:36:22] 2025-11-23 14:35:49,301 | INFO     | exeerrorcode: 0
[2025-11-23 15:36:22] 2025-11-23 14:35:49,301 | INFO     | exeerrordiag: 
[2025-11-23 15:36:22] 2025-11-23 14:35:49,301 | INFO     | exitcode: 0
[2025-11-23 15:36:22] 2025-11-23 14:35:49,301 | INFO     | exitmsg: OK
[2025-11-23 15:36:22] 2025-11-23 14:35:49,301 | INFO     | cpuconsumptiontime: 234298 s
[2025-11-23 15:36:22] 2025-11-23 14:35:49,302 | INFO     | nevents: 1000
[2025-11-23 15:36:22] 2025-11-23 14:35:49,302 | INFO     | neventsw: 0
[2025-11-23 15:36:22] 2025-11-23 14:35:49,302 | INFO     | pid: 2754232
[2025-11-23 15:36:22] 2025-11-23 14:35:49,302 | INFO     | pgrp: 2754232
[2025-11-23 15:36:22] 2025-11-23 14:35:49,302 | INFO     | corecount: 12
[2025-11-23 15:36:22] 2025-11-23 14:35:49,302 | INFO     | event service: False
[2025-11-23 15:36:22] 2025-11-23 14:35:49,302 | INFO     | sizes: {0: 2298637, 1: 2298836, 6: 2299098, 11: 2299126, 20500: 2333804, 20501: 2333803, 20504: 2343039, 20512: 2343229}
[2025-11-23 15:36:22] 2025-11-23 14:35:49,302 | INFO     | --------------------------------------------------
[2025-11-23 15:36:22] 2025-11-23 14:35:49,302 | INFO     | 
[2025-11-23 15:36:22] 2025-11-23 14:35:49,302 | INFO     | executing command: ls -lF /scratch/.boinc/slots/0
[2025-11-23 15:36:22] 2025-11-23 14:35:49,330 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 15:36:22] 2025-11-23 14:35:49,330 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 15:36:22] 2025-11-23 14:35:49,331 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 15:36:22] 2025-11-23 14:35:49,331 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 15:36:22] 2025-11-23 14:35:49,331 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 15:36:22] 2025-11-23 14:35:49,331 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 15:36:22] 2025-11-23 14:35:49,331 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 15:36:22] 2025-11-23 14:35:49,331 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 15:36:22] 2025-11-23 14:35:49,331 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 15:36:22] 2025-11-23 14:35:49,331 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 15:36:22] 2025-11-23 14:35:49,331 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 15:36:22] 2025-11-23 14:35:49,331 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 15:36:22] 2025-11-23 14:35:49,331 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 15:36:22] 2025-11-23 14:35:49,332 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 15:36:22] 2025-11-23 14:35:49,332 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 15:36:22] 2025-11-23 14:35:49,332 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 15:36:22] 2025-11-23 14:35:49,332 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 15:36:22] 2025-11-23 14:35:49,332 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 15:36:22] 2025-11-23 14:35:49,332 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 15:36:22] 2025-11-23 14:35:49,332 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 15:36:22] 2025-11-23 14:35:49,332 | INFO     | job 6894267738 has completed (purged errors)
[2025-11-23 15:36:22] 2025-11-23 14:35:49,332 | INFO     | overall cleanup function is called
[2025-11-23 15:36:22] 2025-11-23 14:35:50,358 | INFO     | --- collectZombieJob: --- 10, [2754232]
[2025-11-23 15:36:22] 2025-11-23 14:35:50,358 | INFO     | zombie collector waiting for pid 2754232
[2025-11-23 15:36:22] 2025-11-23 14:35:50,358 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 15:36:22] 2025-11-23 14:35:50,359 | INFO     | collected zombie processes
[2025-11-23 15:36:22] 2025-11-23 14:35:50,359 | INFO     | will attempt to kill all subprocesses of pid=2754232
[2025-11-23 15:36:22] 2025-11-23 14:35:50,737 | INFO     | process IDs to be killed: [2754232] (in reverse order)
[2025-11-23 15:36:22] 2025-11-23 14:35:50,864 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 15:36:22] 2025-11-23 14:35:50,865 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 15:36:22] 2025-11-23 14:35:50,878 | INFO     | did not find any defunct processes belonging to 2754232
[2025-11-23 15:36:22] 2025-11-23 14:35:50,891 | INFO     | did not find any defunct processes belonging to 2754232
[2025-11-23 15:36:22] 2025-11-23 14:35:50,893 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 15:36:22] 2025-11-23 14:35:50,894 | INFO     | ready for new job
[2025-11-23 15:36:22] 2025-11-23 14:35:50,894 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 15:36:22] 2025-11-23 14:35:50,898 | INFO     | ***************************************
[2025-11-23 15:36:22] 2025-11-23 14:35:50,898 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 15:36:22] 2025-11-23 14:35:50,898 | INFO     | ***************************************
[2025-11-23 15:36:22] 2025-11-23 14:35:50,898 | INFO     | 
[2025-11-23 15:36:22] 2025-11-23 14:35:50,905 | INFO     | architecture information:
[2025-11-23 15:36:22] 2025-11-23 14:35:50,905 | INFO     | executing command: cat /etc/os-release
[2025-11-23 15:36:22] 2025-11-23 14:35:50,930 | INFO     | cat /etc/os-release:
[2025-11-23 15:36:22] NAME="CentOS Linux"
[2025-11-23 15:36:22] VERSION="7 (Core)"
[2025-11-23 15:36:22] ID="centos"
[2025-11-23 15:36:22] ID_LIKE="rhel fedora"
[2025-11-23 15:36:22] VERSION_ID="7"
[2025-11-23 15:36:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 15:36:22] ANSI_COLOR="0;31"
[2025-11-23 15:36:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 15:36:22] HOME_URL="https://www.centos.org/"
[2025-11-23 15:36:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 15:36:22] 
[2025-11-23 15:36:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 15:36:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 15:36:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 15:36:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 15:36:22] 
[2025-11-23 15:36:22] 2025-11-23 14:35:50,930 | INFO     | ***************************************
[2025-11-23 15:36:22] 2025-11-23 14:35:51,433 | INFO     | executing command: df -mP /scratch/.boinc/slots/0
[2025-11-23 15:36:22] 2025-11-23 14:35:51,458 | INFO     | sufficient remaining disk space (1674746789888 B)
[2025-11-23 15:36:22] 2025-11-23 14:35:51,459 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 15:36:22] 2025-11-23 14:35:51,459 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 15:36:22] 2025-11-23 14:35:51,459 | INFO     | update_server=False
[2025-11-23 15:36:22] 2025-11-23 14:35:51,459 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 15:36:22] 2025-11-23 14:35:51,459 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 15:36:22] 2025-11-23 14:35:51,460 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 15:36:22] 2025-11-23 14:35:51,532 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 15:36:22] 2025-11-23 14:35:51,533 | INFO     | aborting loop
[2025-11-23 15:36:22] 2025-11-23 14:35:51,951 | INFO     | all payload control threads have been joined
[2025-11-23 15:36:22] 2025-11-23 14:35:52,169 | INFO     | all data control threads have been joined
[2025-11-23 15:36:22] 2025-11-23 14:35:52,465 | INFO     | [job] retrieve thread has finished
[2025-11-23 15:36:22] 2025-11-23 14:35:52,522 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 15:36:22] 2025-11-23 14:35:52,522 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 15:36:22] 2025-11-23 14:35:52,536 | INFO     | all job control threads have been joined
[2025-11-23 15:36:22] 2025-11-23 14:35:52,538 | INFO     | [job] job monitor thread has finished
[2025-11-23 15:36:22] 2025-11-23 14:35:52,605 | INFO     | [payload] validate_post thread has finished
[2025-11-23 15:36:22] 2025-11-23 14:35:52,754 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 15:36:22] 2025-11-23 14:35:52,957 | INFO     | [payload] control thread has finished
[2025-11-23 15:36:22] 2025-11-23 14:35:53,175 | INFO     | [data] control thread has finished
[2025-11-23 15:36:22] 2025-11-23 14:35:53,231 | INFO     | [data] copytool_in thread has finished
[2025-11-23 15:36:22] 2025-11-23 14:35:53,357 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 15:36:22] 2025-11-23 14:35:53,466 | INFO     | [data] copytool_out thread has finished
[2025-11-23 15:36:22] 2025-11-23 14:35:53,522 | INFO     | [job] validate thread has finished
[2025-11-23 15:36:22] 2025-11-23 14:35:53,542 | INFO     | [job] control thread has finished
[2025-11-23 15:36:22] 2025-11-23 14:35:53,622 | INFO     | [payload] failed_post thread has finished
[2025-11-23 15:36:22] 2025-11-23 14:35:53,950 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 15:36:22] 2025-11-23 14:35:54,957 | INFO     | [job] queue monitor thread has finished
[2025-11-23 15:36:22] 2025-11-23 14:35:55,466 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 15:36:22] 2025-11-23 14:36:14,114 | INFO     | [monitor] cgroup control has ended
[2025-11-23 15:36:22] 2025-11-23 14:36:14,702 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140550486140736)>', '<ExcThread(monitor, started 140550204262144)>']
[2025-11-23 15:36:22] 2025-11-23 14:36:19,714 | INFO     | all workflow threads have been joined
[2025-11-23 15:36:22] 2025-11-23 14:36:19,714 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 15:36:22] 2025-11-23 14:36:19,714 | INFO     | traces error code: 0
[2025-11-23 15:36:22] 2025-11-23 14:36:19,714 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 15:36:22] 2025-11-23 14:36:22,437 | INFO     | PID=2747122 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 15:36:22] 2025-11-23 14:36:22,438 | INFO     | .. there are 8 such processes running
[2025-11-23 15:36:22] 2025-11-23 14:36:22,438 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 15:36:22] 2025-11-23 14:36:22,438 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 15:36:22] 2025-11-23 14:36:22,438 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 15:36:22] 2025-11-23 14:36:22,438 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 15:36:22] 2025-11-23 14:36:22,438 | INFO     | [monitor] control thread has ended
[2025-11-23 15:36:22] 2025-11-23 14:36:22,592 [wrapper] ==== pilot stdout END ====
[2025-11-23 15:36:22] 2025-11-23 14:36:22,595 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 15:36:22] 2025-11-23 14:36:22,599 [wrapper] pilotpid: 2747122
[2025-11-23 15:36:22] 2025-11-23 14:36:22,604 [wrapper] Pilot exit status: 0
[2025-11-23 15:36:22] 2025-11-23 14:36:22,619 [wrapper] pandaids: 6894267738
[2025-11-23 15:36:22] 2025-11-23 14:36:22,703 [wrapper] cleanup supervisor_pilot 3227751 2747123
[2025-11-23 15:36:22] 2025-11-23 14:36:22,708 [wrapper] Test setup, not cleaning
[2025-11-23 15:36:22] 2025-11-23 14:36:22,712 [wrapper] apfmon messages muted
[2025-11-23 15:36:22] 2025-11-23 14:36:22,716 [wrapper] ==== wrapper stdout END ====
[2025-11-23 15:36:22] 2025-11-23 14:36:22,720 [wrapper] ==== wrapper stderr END ====
[2025-11-23 15:36:22]  *** Error codes and diagnostics ***
[2025-11-23 15:36:22]     "exeErrorCode": 0,
[2025-11-23 15:36:22]     "exeErrorDiag": "",
[2025-11-23 15:36:22]     "pilotErrorCode": 0,
[2025-11-23 15:36:22]     "pilotErrorDiag": "",
[2025-11-23 15:36:22]  *** Listing of results directory ***
[2025-11-23 15:36:22] total 1317292
[2025-11-23 15:36:22] -rw-r--r-- 1 boinc boinc    576529 Nov 21 06:09 pilot3.tar.gz
[2025-11-23 15:36:22] -rwx------ 1 boinc boinc     36292 Nov 21 06:32 runpilot2-wrapper.sh
[2025-11-23 15:36:22] -rw-r--r-- 1 boinc boinc      5112 Nov 21 06:32 queuedata.json
[2025-11-23 15:36:22] -rw-r--r-- 1 boinc boinc       100 Nov 23 09:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 15:36:22] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 09:53 run_atlas
[2025-11-23 15:36:22] -rw-r--r-- 1 boinc boinc       105 Nov 23 09:53 job.xml
[2025-11-23 15:36:22] -rw-r--r-- 2 boinc boinc 409560912 Nov 23 09:53 EVNT.47493127._002250.pool.root.1
[2025-11-23 15:36:22] -rw-r--r-- 1 boinc boinc      6665 Nov 23 09:53 init_data.xml
[2025-11-23 15:36:22] -rw-r--r-- 2 boinc boinc     15847 Nov 23 09:53 start_atlas.sh
[2025-11-23 15:36:22] drwxrwx--x 2 boinc boinc      4096 Nov 23 09:53 shared
[2025-11-23 15:36:22] -rw-r--r-- 2 boinc boinc    590102 Nov 23 09:53 input.tar.gz
[2025-11-23 15:36:22] -rw-r--r-- 1 boinc boinc         0 Nov 23 09:53 boinc_lockfile
[2025-11-23 15:36:22] -rw-r--r-- 1 boinc boinc      2786 Nov 23 09:53 pandaJob.out
[2025-11-23 15:36:22] -rw------- 1 boinc boinc    989784 Nov 23 09:53 agis_schedconf.cvmfs.json
[2025-11-23 15:36:22] drwx------ 5 boinc boinc      4096 Nov 23 09:53 pilot3
[2025-11-23 15:36:22] -rw-r--r-- 1 boinc boinc       532 Nov 23 15:27 boinc_task_state.xml
[2025-11-23 15:36:22] -rw------- 1 boinc boinc 925559448 Nov 23 15:35 HITS.47533967._002217.pool.root.1
[2025-11-23 15:36:22] -rw------- 1 boinc boinc        95 Nov 23 15:35 pilot_heartbeat.json
[2025-11-23 15:36:22] -rw------- 1 boinc boinc      1034 Nov 23 15:35 memory_monitor_summary.json
[2025-11-23 15:36:22] -rw------- 1 boinc boinc   1526164 Nov 23 15:35 agis_ddmendpoints.agis.ALL.json
[2025-11-23 15:36:22] -rw------- 1 boinc boinc   2079292 Nov 23 15:35 log.47533967._002217.job.log.tgz.1
[2025-11-23 15:36:22] -rw------- 1 boinc boinc      8614 Nov 23 15:35 heartbeat.json
[2025-11-23 15:36:22] -rw-r--r-- 1 boinc boinc      8192 Nov 23 15:36 boinc_mmap_file
[2025-11-23 15:36:22] -rw-r--r-- 1 boinc boinc        29 Nov 23 15:36 wrapper_checkpoint.txt
[2025-11-23 15:36:22] -rw------- 1 boinc boinc       822 Nov 23 15:36 pilotlog.txt
[2025-11-23 15:36:22] -rw------- 1 boinc boinc   2853243 Nov 23 15:36 log.47533967._002217.job.log.1
[2025-11-23 15:36:22] -rw------- 1 boinc boinc       353 Nov 23 15:36 output.list
[2025-11-23 15:36:22] -rw-r--r-- 1 boinc boinc       620 Nov 23 15:36 runtime_log
[2025-11-23 15:36:22] -rw------- 1 boinc boinc   4956160 Nov 23 15:36 result.tar.gz
[2025-11-23 15:36:22] -rw-r--r-- 1 boinc boinc      8881 Nov 23 15:36 runtime_log.err
[2025-11-23 15:36:22] -rw------- 1 boinc boinc       671 Nov 23 15:36 81cLDmbwYg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmL7IKDmrehrQo.diag
[2025-11-23 15:36:22] -rw-r--r-- 1 boinc boinc     21363 Nov 23 15:36 stderr.txt
[2025-11-23 15:36:22] HITS file was successfully produced:
[2025-11-23 15:36:22] -rw------- 1 boinc boinc 925559448 Nov 23 15:35 shared/HITS.pool.root.1
[2025-11-23 15:36:22]  *** Contents of shared directory: ***
[2025-11-23 15:36:22] total 1309276
[2025-11-23 15:36:22] -rw-r--r-- 2 boinc boinc 409560912 Nov 23 09:53 ATLAS.root_0
[2025-11-23 15:36:22] -rw-r--r-- 2 boinc boinc     15847 Nov 23 09:53 start_atlas.sh
[2025-11-23 15:36:22] -rw-r--r-- 2 boinc boinc    590102 Nov 23 09:53 input.tar.gz
[2025-11-23 15:36:22] -rw------- 1 boinc boinc 925559448 Nov 23 15:35 HITS.pool.root.1
[2025-11-23 15:36:22] -rw------- 1 boinc boinc   4956160 Nov 23 15:36 result.tar.gz
15:36:24 (2742183): run_atlas exited; CPU time 234317.387631
15:36:24 (2742183): called boinc_finish(0)

</stderr_txt>
]]>

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