Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:07:34 (28040): wrapper (7.7.26015): starting
17:07:34 (28040): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 17:07:34] Arguments: --nthreads 12
[2025-11-22 17:07:34] Threads: 12
[2025-11-22 17:07:34] Checking for CVMFS
[2025-11-22 17:07:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 17:07:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 17:07:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 17:07:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 17:07:35] 2.11.2.0 6893 112414 93892 153185 2 82 15285587 20275201 1 130560 0 48111849 99.931 5835381 30857 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 17:07:35] CVMFS is ok
[2025-11-22 17:07:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 17:07:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 17:07:35] Further information can be found at the LHC@home message board.
[2025-11-22 17:07:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 17:07:35] Checking for apptainer binary...
[2025-11-22 17:07:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 17:07:35] Running /usr/bin/apptainer --version
[2025-11-22 17:07:35] apptainer version 1.3.2-1.el7
[2025-11-22 17:07:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 17:07:36] c-205-3.aglt2.org
[2025-11-22 17:07:36] apptainer works
[2025-11-22 17:07:36] Set ATHENA_PROC_NUMBER=12
[2025-11-22 17:07:36] Set ATHENA_CORE_NUMBER=12
[2025-11-22 17:07:36] Starting ATLAS job with PandaID=6895332448
[2025-11-22 17:07:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 00:19:49]  *** The last 200 lines of the pilot log: ***
[2025-11-23 00:19:49] 2025-11-23 05:19:15,740 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 00:19:49] 2025-11-23 05:19:15,925 | INFO     | time since job start (25884s) is within the limit (172800.0s)
[2025-11-23 00:19:49] 2025-11-23 05:19:16,059 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 00:19:49] 2025-11-23 05:19:16,063 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-11-23 00:19:49] 2025-11-23 05:19:16,065 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895332448/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 00:19:49] 2025-11-23 05:19:16,066 | INFO     | extracted standard info from prmon json
[2025-11-23 00:19:49] 2025-11-23 05:19:16,066 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 00:19:49] 2025-11-23 05:19:16,066 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 00:19:49] 2025-11-23 05:19:16,072 | INFO     | fitting pss+swap vs Time
[2025-11-23 00:19:49] 2025-11-23 05:19:16,073 | INFO     | sum of square deviations: 23635856550.714615
[2025-11-23 00:19:49] 2025-11-23 05:19:16,077 | INFO     | sum of deviations: 434334578628.835
[2025-11-23 00:19:49] 2025-11-23 05:19:16,077 | INFO     | mean x: 1763862202.7240567
[2025-11-23 00:19:49] 2025-11-23 05:19:16,077 | INFO     | mean y: 3436215.212264151
[2025-11-23 00:19:49] 2025-11-23 05:19:16,077 | INFO     | intersect: -32409450744.71977
[2025-11-23 00:19:49] 2025-11-23 05:19:16,078 | INFO     | chi2: 5.107123583563516
[2025-11-23 00:19:49] 2025-11-23 05:19:16,078 | INFO     | sum of square deviations: 22809525845.460705
[2025-11-23 00:19:49] 2025-11-23 05:19:16,082 | INFO     | sum of deviations: 580331974827.408
[2025-11-23 00:19:49] 2025-11-23 05:19:16,082 | INFO     | mean x: 1763862050.2267303
[2025-11-23 00:19:49] 2025-11-23 05:19:16,082 | INFO     | mean y: 3463122.1957040573
[2025-11-23 00:19:49] 2025-11-23 05:19:16,082 | INFO     | intersect: -44873644533.02149
[2025-11-23 00:19:49] 2025-11-23 05:19:16,083 | INFO     | chi2: 2.570677351174019
[2025-11-23 00:19:49] 2025-11-23 05:19:16,083 | INFO     | current chi2=2.570677351174019 (change=49.66486890101221 %)
[2025-11-23 00:19:49] 2025-11-23 05:19:16,083 | INFO     | sum of square deviations: 22002683877.700428
[2025-11-23 00:19:49] 2025-11-23 05:19:16,087 | INFO     | sum of deviations: 597717913190.0966
[2025-11-23 00:19:49] 2025-11-23 05:19:16,087 | INFO     | mean x: 1763861897.7294686
[2025-11-23 00:19:49] 2025-11-23 05:19:16,087 | INFO     | mean y: 3466371.893719807
[2025-11-23 00:19:49] 2025-11-23 05:19:16,087 | INFO     | intersect: -47913045019.46882
[2025-11-23 00:19:49] 2025-11-23 05:19:16,088 | INFO     | chi2: 2.373071064955047
[2025-11-23 00:19:49] 2025-11-23 05:19:16,088 | INFO     | current chi2=2.373071064955047 (change=7.686934578885442 %)
[2025-11-23 00:19:49] 2025-11-23 05:19:16,088 | INFO     | right removable region: 413
[2025-11-23 00:19:49] 2025-11-23 05:19:16,089 | INFO     | sum of square deviations: 22809493636.911552
[2025-11-23 00:19:49] 2025-11-23 05:19:16,092 | INFO     | sum of deviations: 303440808493.31793
[2025-11-23 00:19:49] 2025-11-23 05:19:16,092 | INFO     | mean x: 1763862355.2243438
[2025-11-23 00:19:49] 2025-11-23 05:19:16,093 | INFO     | mean y: 3460284.5178997614
[2025-11-23 00:19:49] 2025-11-23 05:19:16,093 | INFO     | intersect: -23461673473.386673
[2025-11-23 00:19:49] 2025-11-23 05:19:16,093 | INFO     | chi2: 2.943264832306749
[2025-11-23 00:19:49] 2025-11-23 05:19:16,093 | INFO     | current chi2=2.943264832306749 (change=42.36942215811676 %)
[2025-11-23 00:19:49] 2025-11-23 05:19:16,094 | INFO     | sum of square deviations: 22002619338.60873
[2025-11-23 00:19:49] 2025-11-23 05:19:16,097 | INFO     | sum of deviations: 264912977350.855
[2025-11-23 00:19:49] 2025-11-23 05:19:16,098 | INFO     | mean x: 1763862507.7246377
[2025-11-23 00:19:49] 2025-11-23 05:19:16,098 | INFO     | mean y: 3467564.3671497586
[2025-11-23 00:19:49] 2025-11-23 05:19:16,098 | INFO     | intersect: -21233552508.91771
[2025-11-23 00:19:49] 2025-11-23 05:19:16,098 | INFO     | chi2: 2.868234743516822
[2025-11-23 00:19:49] 2025-11-23 05:19:16,098 | INFO     | current chi2=2.868234743516822 (change=2.5492129680740607 %)
[2025-11-23 00:19:49] 2025-11-23 05:19:16,098 | INFO     | left removable region: 20
[2025-11-23 00:19:49] 2025-11-23 05:19:16,099 | INFO     | sum of square deviations: 18821434168.844788
[2025-11-23 00:19:49] 2025-11-23 05:19:16,102 | INFO     | sum of deviations: 369077340806.6741
[2025-11-23 00:19:49] 2025-11-23 05:19:16,102 | INFO     | mean x: 1763862477.226463
[2025-11-23 00:19:49] 2025-11-23 05:19:16,103 | INFO     | mean y: 3510619.262086514
[2025-11-23 00:19:49] 2025-11-23 05:19:16,103 | INFO     | intersect: -34584803257.531746
[2025-11-23 00:19:49] 2025-11-23 05:19:16,103 | INFO     | chi2: 0.061240889103983655
[2025-11-23 00:19:49] 2025-11-23 05:19:16,103 | INFO     | current memory leak: 19.61 B/s (using 393 data points, chi2=0.06)
[2025-11-23 00:19:49] 2025-11-23 05:19:16,104 | INFO     | could have reported an average CPU frequency of 2407 MHz (18 samples)
[2025-11-23 00:19:49] 2025-11-23 05:19:16,104 | INFO     | ..............................
[2025-11-23 00:19:49] 2025-11-23 05:19:16,104 | INFO     | . Timing measurements:
[2025-11-23 00:19:49] 2025-11-23 05:19:16,104 | INFO     | . get job = 0 s
[2025-11-23 00:19:49] 2025-11-23 05:19:16,104 | INFO     | . initial setup = 2 s
[2025-11-23 00:19:49] 2025-11-23 05:19:16,104 | INFO     | . payload setup = 7 s
[2025-11-23 00:19:49] 2025-11-23 05:19:16,104 | INFO     | . stage-in = 0 s
[2025-11-23 00:19:49] 2025-11-23 05:19:16,104 | INFO     | . payload execution = 25847 s
[2025-11-23 00:19:49] 2025-11-23 05:19:16,105 | INFO     | . stage-out = 3 s
[2025-11-23 00:19:49] 2025-11-23 05:19:16,105 | INFO     | . log creation = 0 s
[2025-11-23 00:19:49] 2025-11-23 05:19:16,105 | INFO     | ..............................
[2025-11-23 00:19:49] 2025-11-23 05:19:16,184 | INFO     | 
[2025-11-23 00:19:49] 2025-11-23 05:19:16,184 | INFO     | job summary report
[2025-11-23 00:19:49] 2025-11-23 05:19:16,185 | INFO     | --------------------------------------------------
[2025-11-23 00:19:49] 2025-11-23 05:19:16,185 | INFO     | PanDA job id: 6895332448
[2025-11-23 00:19:49] 2025-11-23 05:19:16,185 | INFO     | task id: 47556137
[2025-11-23 00:19:49] 2025-11-23 05:19:16,185 | INFO     | errors: (none)
[2025-11-23 00:19:49] 2025-11-23 05:19:16,185 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 00:19:49] 2025-11-23 05:19:16,186 | INFO     | pilot state: finished 
[2025-11-23 00:19:49] 2025-11-23 05:19:16,186 | INFO     | transexitcode: 0
[2025-11-23 00:19:49] 2025-11-23 05:19:16,186 | INFO     | exeerrorcode: 0
[2025-11-23 00:19:49] 2025-11-23 05:19:16,186 | INFO     | exeerrordiag: 
[2025-11-23 00:19:49] 2025-11-23 05:19:16,186 | INFO     | exitcode: 0
[2025-11-23 00:19:49] 2025-11-23 05:19:16,186 | INFO     | exitmsg: OK
[2025-11-23 00:19:49] 2025-11-23 05:19:16,186 | INFO     | cpuconsumptiontime: 297296 s
[2025-11-23 00:19:49] 2025-11-23 05:19:16,187 | INFO     | nevents: 1000
[2025-11-23 00:19:49] 2025-11-23 05:19:16,187 | INFO     | neventsw: 0
[2025-11-23 00:19:49] 2025-11-23 05:19:16,187 | INFO     | pid: 6727
[2025-11-23 00:19:49] 2025-11-23 05:19:16,187 | INFO     | pgrp: 6727
[2025-11-23 00:19:49] 2025-11-23 05:19:16,187 | INFO     | corecount: 12
[2025-11-23 00:19:49] 2025-11-23 05:19:16,187 | INFO     | event service: False
[2025-11-23 00:19:49] 2025-11-23 05:19:16,188 | INFO     | sizes: {0: 2298807, 5: 2299069, 11: 2299125, 25858: 2336388, 25862: 2345438, 25868: 2345628}
[2025-11-23 00:19:49] 2025-11-23 05:19:16,188 | INFO     | --------------------------------------------------
[2025-11-23 00:19:49] 2025-11-23 05:19:16,188 | INFO     | 
[2025-11-23 00:19:49] 2025-11-23 05:19:16,188 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 00:19:49] 2025-11-23 05:19:16,301 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 00:19:49] 2025-11-23 05:19:16,302 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 00:19:49] 2025-11-23 05:19:16,302 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 00:19:49] 2025-11-23 05:19:16,302 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 00:19:49] 2025-11-23 05:19:16,302 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 00:19:49] 2025-11-23 05:19:16,302 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 00:19:49] 2025-11-23 05:19:16,303 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 00:19:49] 2025-11-23 05:19:16,303 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 00:19:49] 2025-11-23 05:19:16,303 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 00:19:49] 2025-11-23 05:19:16,303 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 00:19:49] 2025-11-23 05:19:16,303 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 00:19:49] 2025-11-23 05:19:16,303 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 00:19:49] 2025-11-23 05:19:16,303 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 00:19:49] 2025-11-23 05:19:16,303 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 00:19:49] 2025-11-23 05:19:16,304 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 00:19:49] 2025-11-23 05:19:16,304 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 00:19:49] 2025-11-23 05:19:16,304 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 00:19:49] 2025-11-23 05:19:16,304 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 00:19:49] 2025-11-23 05:19:16,304 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 00:19:49] 2025-11-23 05:19:16,304 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 00:19:49] 2025-11-23 05:19:16,304 | INFO     | job 6895332448 has completed (purged errors)
[2025-11-23 00:19:49] 2025-11-23 05:19:16,305 | INFO     | overall cleanup function is called
[2025-11-23 00:19:49] 2025-11-23 05:19:17,320 | INFO     | --- collectZombieJob: --- 10, [6727]
[2025-11-23 00:19:49] 2025-11-23 05:19:17,320 | INFO     | zombie collector waiting for pid 6727
[2025-11-23 00:19:49] 2025-11-23 05:19:17,320 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 00:19:49] 2025-11-23 05:19:17,321 | INFO     | collected zombie processes
[2025-11-23 00:19:49] 2025-11-23 05:19:17,321 | INFO     | will attempt to kill all subprocesses of pid=6727
[2025-11-23 00:19:49] 2025-11-23 05:19:17,413 | INFO     | process IDs to be killed: [6727] (in reverse order)
[2025-11-23 00:19:49] 2025-11-23 05:19:17,465 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 00:19:49] 2025-11-23 05:19:17,466 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 00:19:49] 2025-11-23 05:19:17,469 | INFO     | did not find any defunct processes belonging to 6727
[2025-11-23 00:19:49] 2025-11-23 05:19:17,473 | INFO     | did not find any defunct processes belonging to 6727
[2025-11-23 00:19:49] 2025-11-23 05:19:17,475 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 00:19:49] 2025-11-23 05:19:17,475 | INFO     | ready for new job
[2025-11-23 00:19:49] 2025-11-23 05:19:17,475 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 00:19:49] 2025-11-23 05:19:17,477 | INFO     | ***************************************
[2025-11-23 00:19:49] 2025-11-23 05:19:17,478 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 00:19:49] 2025-11-23 05:19:17,478 | INFO     | ***************************************
[2025-11-23 00:19:49] 2025-11-23 05:19:17,478 | INFO     | 
[2025-11-23 00:19:49] 2025-11-23 05:19:17,478 | INFO     | architecture information:
[2025-11-23 00:19:49] 2025-11-23 05:19:17,479 | INFO     | executing command: cat /etc/os-release
[2025-11-23 00:19:49] 2025-11-23 05:19:17,493 | INFO     | cat /etc/os-release:
[2025-11-23 00:19:49] NAME="CentOS Linux"
[2025-11-23 00:19:49] VERSION="7 (Core)"
[2025-11-23 00:19:49] ID="centos"
[2025-11-23 00:19:49] ID_LIKE="rhel fedora"
[2025-11-23 00:19:49] VERSION_ID="7"
[2025-11-23 00:19:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 00:19:49] ANSI_COLOR="0;31"
[2025-11-23 00:19:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 00:19:49] HOME_URL="https://www.centos.org/"
[2025-11-23 00:19:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 00:19:49] 
[2025-11-23 00:19:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 00:19:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 00:19:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 00:19:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 00:19:49] 
[2025-11-23 00:19:49] 2025-11-23 05:19:17,494 | INFO     | ***************************************
[2025-11-23 00:19:49] 2025-11-23 05:19:17,997 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 00:19:49] 2025-11-23 05:19:18,015 | INFO     | sufficient remaining disk space (28372369408 B)
[2025-11-23 00:19:49] 2025-11-23 05:19:18,015 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 00:19:49] 2025-11-23 05:19:18,015 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 00:19:49] 2025-11-23 05:19:18,015 | INFO     | update_server=False
[2025-11-23 00:19:49] 2025-11-23 05:19:18,016 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 00:19:49] 2025-11-23 05:19:18,016 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 00:19:49] 2025-11-23 05:19:18,016 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 00:19:49] 2025-11-23 05:19:18,157 | INFO     | all payload control threads have been joined
[2025-11-23 00:19:49] 2025-11-23 05:19:18,243 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 00:19:49] 2025-11-23 05:19:18,244 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 00:19:49] 2025-11-23 05:19:18,244 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 00:19:49] 2025-11-23 05:19:18,244 | INFO     | will abort loop
[2025-11-23 00:19:49] 2025-11-23 05:19:18,391 | INFO     | all data control threads have been joined
[2025-11-23 00:19:49] 2025-11-23 05:19:19,021 | INFO     | [job] retrieve thread has finished
[2025-11-23 00:19:49] 2025-11-23 05:19:19,022 | INFO     | [job] queue monitor thread has finished
[2025-11-23 00:19:49] 2025-11-23 05:19:19,163 | INFO     | [payload] control thread has finished
[2025-11-23 00:19:49] 2025-11-23 05:19:19,191 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 00:19:49] 2025-11-23 05:19:19,250 | INFO     | [job] job monitor thread has finished
[2025-11-23 00:19:49] 2025-11-23 05:19:19,350 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 00:19:49] 2025-11-23 05:19:19,396 | INFO     | [data] control thread has finished
[2025-11-23 00:19:49] 2025-11-23 05:19:19,444 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 00:19:49] 2025-11-23 05:19:19,485 | INFO     | [job] validate thread has finished
[2025-11-23 00:19:49] 2025-11-23 05:19:19,651 | INFO     | all job control threads have been joined
[2025-11-23 00:19:49] 2025-11-23 05:19:19,733 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 00:19:49] 2025-11-23 05:19:20,022 | INFO     | [data] copytool_out thread has finished
[2025-11-23 00:19:49] 2025-11-23 05:19:20,085 | INFO     | [payload] validate_post thread has finished
[2025-11-23 00:19:49] 2025-11-23 05:19:20,196 | INFO     | [data] copytool_in thread has finished
[2025-11-23 00:19:49] 2025-11-23 05:19:20,323 | INFO     | [payload] failed_post thread has finished
[2025-11-23 00:19:49] 2025-11-23 05:19:20,656 | INFO     | [job] control thread has finished
[2025-11-23 00:19:49] 2025-11-23 05:19:20,731 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 00:19:49] 2025-11-23 05:19:24,737 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 00:19:49] 2025-11-23 05:19:33,281 | INFO     | [monitor] cgroup control has ended
[2025-11-23 00:19:49] 2025-11-23 05:19:33,917 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139949412984640)>', '<ExcThread(monitor, started 139948657194752)>']
[2025-11-23 00:19:49] 2025-11-23 05:19:38,923 | INFO     | all workflow threads have been joined
[2025-11-23 00:19:49] 2025-11-23 05:19:38,923 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 00:19:49] 2025-11-23 05:19:38,923 | INFO     | traces error code: 0
[2025-11-23 00:19:49] 2025-11-23 05:19:38,924 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 00:19:49] 2025-11-23 05:19:49,127 | INFO     | PID=31721 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 00:19:49] 2025-11-23 05:19:49,128 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 00:19:49] 2025-11-23 05:19:49,128 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 00:19:49] 2025-11-23 05:19:49,128 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 00:19:49] 2025-11-23 05:19:49,128 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 00:19:49] 2025-11-23 05:19:49,128 | INFO     | [monitor] control thread has ended
[2025-11-23 00:19:49] 2025-11-23 05:19:49,223 [wrapper] ==== pilot stdout END ====
[2025-11-23 00:19:49] 2025-11-23 05:19:49,226 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 00:19:49] 2025-11-23 05:19:49,230 [wrapper] pilotpid: 31721
[2025-11-23 00:19:49] 2025-11-23 05:19:49,234 [wrapper] Pilot exit status: 0
[2025-11-23 00:19:49] 2025-11-23 05:19:49,249 [wrapper] pandaids: 6895332448
[2025-11-23 00:19:49] 2025-11-23 05:19:49,286 [wrapper] cleanup supervisor_pilot   772 31722
[2025-11-23 00:19:49] 2025-11-23 05:19:49,289 [wrapper] Test setup, not cleaning
[2025-11-23 00:19:49] 2025-11-23 05:19:49,293 [wrapper] apfmon messages muted
[2025-11-23 00:19:49] 2025-11-23 05:19:49,297 [wrapper] ==== wrapper stdout END ====
[2025-11-23 00:19:49] 2025-11-23 05:19:49,300 [wrapper] ==== wrapper stderr END ====
[2025-11-23 00:19:49]  *** Error codes and diagnostics ***
[2025-11-23 00:19:49]     "exeErrorCode": 0,
[2025-11-23 00:19:49]     "exeErrorDiag": "",
[2025-11-23 00:19:49]     "pilotErrorCode": 0,
[2025-11-23 00:19:49]     "pilotErrorDiag": "",
[2025-11-23 00:19:49]  *** Listing of results directory ***
[2025-11-23 00:19:49] total 1313132
[2025-11-23 00:19:49] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 18:51 pilot3.tar.gz
[2025-11-23 00:19:49] -rwx------ 1 boincer umatlas     36292 Nov 21 19:17 runpilot2-wrapper.sh
[2025-11-23 00:19:49] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 19:17 queuedata.json
[2025-11-23 00:19:49] -rw-r--r-- 1 boincer umatlas       100 Nov 22 17:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 00:19:49] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 17:07 run_atlas
[2025-11-23 00:19:49] -rw-r--r-- 1 boincer umatlas       105 Nov 22 17:07 job.xml
[2025-11-23 00:19:49] -rw-r--r-- 2 boincer umatlas 410269471 Nov 22 17:07 EVNT.47483658._000188.pool.root.1
[2025-11-23 00:19:49] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 17:07 start_atlas.sh
[2025-11-23 00:19:49] drwxrwx--x 2 boincer umatlas      4096 Nov 22 17:07 shared
[2025-11-23 00:19:49] -rw-r--r-- 2 boincer umatlas    590096 Nov 22 17:07 input.tar.gz
[2025-11-23 00:19:49] -rw-r--r-- 1 boincer umatlas         0 Nov 22 17:07 boinc_lockfile
[2025-11-23 00:19:49] -rw-r--r-- 1 boincer umatlas      2786 Nov 22 17:07 pandaJob.out
[2025-11-23 00:19:49] -rw------- 1 boincer umatlas        57 Nov 22 17:07 setup.sh.local
[2025-11-23 00:19:49] -rw------- 1 boincer umatlas    989768 Nov 22 17:07 agis_schedconf.cvmfs.json
[2025-11-23 00:19:49] drwx------ 5 boincer umatlas      4096 Nov 22 17:07 pilot3
[2025-11-23 00:19:49] -rw-r--r-- 1 boincer umatlas       532 Nov 23 00:10 boinc_task_state.xml
[2025-11-23 00:19:49] -rw------- 1 boincer umatlas 918800401 Nov 23 00:18 HITS.47556137._001879.pool.root.1
[2025-11-23 00:19:49] -rw------- 1 boincer umatlas        95 Nov 23 00:18 pilot_heartbeat.json
[2025-11-23 00:19:49] -rw------- 1 boincer umatlas      1063 Nov 23 00:19 memory_monitor_summary.json
[2025-11-23 00:19:49] -rw------- 1 boincer umatlas   1526164 Nov 23 00:19 agis_ddmendpoints.agis.ALL.json
[2025-11-23 00:19:49] -rw------- 1 boincer umatlas   2194398 Nov 23 00:19 log.47556137._001879.job.log.tgz.1
[2025-11-23 00:19:49] -rw------- 1 boincer umatlas      8661 Nov 23 00:19 heartbeat.json
[2025-11-23 00:19:49] -rw-r--r-- 1 boincer umatlas      5955 Nov 23 00:19 init_data.xml
[2025-11-23 00:19:49] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 00:19 boinc_mmap_file
[2025-11-23 00:19:49] -rw-r--r-- 1 boincer umatlas        29 Nov 23 00:19 wrapper_checkpoint.txt
[2025-11-23 00:19:49] -rw------- 1 boincer umatlas       745 Nov 23 00:19 pilotlog.txt
[2025-11-23 00:19:49] -rw------- 1 boincer umatlas   3633755 Nov 23 00:19 log.47556137._001879.job.log.1
[2025-11-23 00:19:49] -rw------- 1 boincer umatlas       353 Nov 23 00:19 output.list
[2025-11-23 00:19:49] -rw-r--r-- 1 boincer umatlas       620 Nov 23 00:19 runtime_log
[2025-11-23 00:19:49] -rw------- 1 boincer umatlas   5847040 Nov 23 00:19 result.tar.gz
[2025-11-23 00:19:49] -rw-r--r-- 1 boincer umatlas      9340 Nov 23 00:19 runtime_log.err
[2025-11-23 00:19:49] -rw------- 1 boincer umatlas       669 Nov 23 00:19 qAmLDmEVqg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmLsHKDmgOxnGn.diag
[2025-11-23 00:19:49] -rw-r--r-- 1 boincer umatlas     21270 Nov 23 00:19 stderr.txt
[2025-11-23 00:19:49] HITS file was successfully produced:
[2025-11-23 00:19:49] -rw------- 1 boincer umatlas 918800401 Nov 23 00:18 shared/HITS.pool.root.1
[2025-11-23 00:19:49]  *** Contents of shared directory: ***
[2025-11-23 00:19:49] total 1304236
[2025-11-23 00:19:49] -rw-r--r-- 2 boincer umatlas 410269471 Nov 22 17:07 ATLAS.root_0
[2025-11-23 00:19:49] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 17:07 start_atlas.sh
[2025-11-23 00:19:49] -rw-r--r-- 2 boincer umatlas    590096 Nov 22 17:07 input.tar.gz
[2025-11-23 00:19:49] -rw------- 1 boincer umatlas 918800401 Nov 23 00:18 HITS.pool.root.1
[2025-11-23 00:19:49] -rw------- 1 boincer umatlas   5847040 Nov 23 00:19 result.tar.gz
00:19:51 (28040): run_atlas exited; CPU time 290493.951319
00:19:51 (28040): called boinc_finish(0)

</stderr_txt>
]]>

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