Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:56:11 (1108387): wrapper (7.7.26015): starting
13:56:11 (1108387): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 13:56:11] Arguments: --nthreads 12
[2025-11-22 13:56:11] Threads: 12
[2025-11-22 13:56:11] Checking for CVMFS
[2025-11-22 13:56:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 13:56:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 13:56:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 13:56:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 13:56:11] 2.11.5.0 4091557 22906 251568 153185 2 257 23562963 45568000 14361 130560 0 181304699 99.754 125066790 22430 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-22 13:56:11] CVMFS is ok
[2025-11-22 13:56:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 13:56:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 13:56:11] Further information can be found at the LHC@home message board.
[2025-11-22 13:56:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 13:56:11] Checking for apptainer binary...
[2025-11-22 13:56:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 13:56:11] Running /usr/bin/apptainer --version
[2025-11-22 13:56:11] apptainer version 1.4.1-1.el9
[2025-11-22 13:56:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 13:56:12] wns0073.triumf.lcg
[2025-11-22 13:56:12] apptainer works
[2025-11-22 13:56:12] Set ATHENA_PROC_NUMBER=12
[2025-11-22 13:56:12] Set ATHENA_CORE_NUMBER=12
[2025-11-22 13:56:12] Starting ATLAS job with PandaID=6895339679
[2025-11-22 13:56:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 14:00:45]  *** The last 200 lines of the pilot log: ***
[2025-11-22 14:00:45] 2025-11-22 22:00:13,241 | INFO     | ..............................
[2025-11-22 14:00:45] 2025-11-22 22:00:13,241 | INFO     | . Timing measurements:
[2025-11-22 14:00:45] 2025-11-22 22:00:13,241 | INFO     | . get job = 0 s
[2025-11-22 14:00:45] 2025-11-22 22:00:13,252 | INFO     | . initial setup = 3 s
[2025-11-22 14:00:45] 2025-11-22 22:00:13,252 | INFO     | . payload setup = 7 s
[2025-11-22 14:00:45] 2025-11-22 22:00:13,252 | INFO     | . stage-in = 0 s
[2025-11-22 14:00:45] 2025-11-22 22:00:13,252 | INFO     | . payload execution = 77 s
[2025-11-22 14:00:45] 2025-11-22 22:00:13,253 | INFO     | . stage-out = 0 s
[2025-11-22 14:00:45] 2025-11-22 22:00:13,253 | INFO     | . log creation = 0 s
[2025-11-22 14:00:45] 2025-11-22 22:00:13,253 | INFO     | ..............................
[2025-11-22 14:00:45] 2025-11-22 22:00:13,253 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 14:00:45] 2025-11-22 22:00:13,253 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895339679/pilotlog.txt
[2025-11-22 14:00:45] 2025-11-22 22:00:13,285 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-22 14:00:45] - Log from pilotlog.txt -
[2025-11-22 14:00:45] 2025-11-22 22:00:13,237 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895339679/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 14:00:45] 2025-11-22 22:00:13,238 | INFO     | extracted standard info from prmon json
[2025-11-22 14:00:45] 2025-11-22 22:00:13,238 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 14:00:45] 2025-11-22 22:00:13,238 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 14:00:45] 2025-11-22 22:00:13,238 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 14:00:45] 2025-11-22 22:00:13,239 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 14:00:45] 2025-11-22 22:00:13,239 | WARNING  | wrong length of table data, x=[1763848616.0, 1763848677.0], y=[21737.0, 712628.0] (must be same and length>=4)
[2025-11-22 14:00:45] 2025-11-22 22:00:13,240 | INFO     | could have reported an average CPU frequency of 1511 MHz (4 samples)
[2025-11-22 14:00:45] 2025-11-22 22:00:13,241 | INFO     | ..............................
[2025-11-22 14:00:45] 2025-11-22 22:00:13,241 | INFO     | . Timing measurements:
[2025-11-22 14:00:45] 2025-11-22 22:00:13,241 | INFO     | . get job = 0 s
[2025-11-22 14:00:45] 2025-11-22 22:00:13,252 | INFO     | . initial setup = 3 s
[2025-11-22 14:00:45] 2025-11-22 22:00:13,252 | INFO     | . payload setup = 7 s
[2025-11-22 14:00:45] 2025-11-22 22:00:13,252 | INFO     | . stage-in = 0 s
[2025-11-22 14:00:45] 2025-11-22 22:00:13,252 | INFO     | . payload execution = 77 s
[2025-11-22 14:00:45] 2025-11-22 22:00:13,253 | INFO     | . stage-out = 0 s
[2025-11-22 14:00:45] 2025-11-22 22:00:13,253 | INFO     | . log creation = 0 s
[2025-11-22 14:00:45] 2025-11-22 22:00:13,253 | INFO     | ..............................
[2025-11-22 14:00:45] 2025-11-22 22:00:13,253 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 14:00:45] 2025-11-22 22:00:13,253 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895339679/pilotlog.txt
[2025-11-22 14:00:45] 2025-11-22 22:00:13,286 | WARNING  | 
[2025-11-22 14:00:45] [begin log extracts]
[2025-11-22 14:00:45] - Log from pilotlog.txt -
[2025-11-22 14:00:45] 2025-11-22 22:00:13,237 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895339679/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 14:00:45] 2025-11-22 22:00:13,238 | INFO     | extracted standard info from prmon json
[2025-11-22 14:00:45] 2025-11-22 22:00:13,238 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 14:00:45] 2025-11-22 22:00:13,238 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 14:00:45] 2025-11-22 22:00:13,238 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 14:00:45] 2025-11-22 22:00:13,239 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 14:00:45] 2025-11-22 22:00:13,239 | WARNING  | wrong length of table data, x=[1763848616.0, 1763848677.0], y=[21737.0, 712628.0] (must be same and length>=4)
[2025-11-22 14:00:45] 2025-11-22 22:00:13,240 | INFO     | could have reported an average CPU frequency of 1511 MHz (4 samples)
[2025-11-22 14:00:45] 2025-11-22 22:00:13,241 | INFO     | ..............................
[2025-11-22 14:00:45] 2025-11-22 22:00:13,241 | INFO     | . Timing measurements:
[2025-11-22 14:00:45] 2025-11-22 22:00:13,241 | INFO     | . get job = 0 s
[2025-11-22 14:00:45] 2025-11-22 22:00:13,252 | INFO     | . initial setup = 3 s
[2025-11-22 14:00:45] 2025-11-22 22:00:13,252 | INFO     | . payload setup = 7 s
[2025-11-22 14:00:45] 2025-11-22 22:00:13,252 | INFO     | . stage-in = 0 s
[2025-11-22 14:00:45] 2025-11-22 22:00:13,252 | INFO     | . payload execution = 77 s
[2025-11-22 14:00:45] 2025-11-22 22:00:13,253 | INFO     | . stage-out = 0 s
[2025-11-22 14:00:45] 2025-11-22 22:00:13,253 | INFO     | . log creation = 0 s
[2025-11-22 14:00:45] 2025-11-22 22:00:13,253 | INFO     | ..............................
[2025-11-22 14:00:45] 2025-11-22 22:00:13,253 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 14:00:45] 2025-11-22 22:00:13,253 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895339679/pilotlog.txt
[2025-11-22 14:00:45] [end log extracts]
[2025-11-22 14:00:45] 2025-11-22 22:00:13,286 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-22 14:00:45] 2025-11-22 22:00:13,287 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-22 14:00:45] 2025-11-22 22:00:13,448 | INFO     | 
[2025-11-22 14:00:45] 2025-11-22 22:00:13,449 | INFO     | job summary report
[2025-11-22 14:00:45] 2025-11-22 22:00:13,449 | INFO     | --------------------------------------------------
[2025-11-22 14:00:45] 2025-11-22 22:00:13,449 | INFO     | PanDA job id: 6895339679
[2025-11-22 14:00:45] 2025-11-22 22:00:13,449 | INFO     | task id: 47556137
[2025-11-22 14:00:45] 2025-11-22 22:00:13,449 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-22 13:58:02,342 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-22 14:00:45] 2025-11-22 22:00:13,449 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-22 14:00:45] 2025-11-22 22:00:13,449 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 14:00:45] 2025-11-22 22:00:13,449 | INFO     | pilot state: failed 
[2025-11-22 14:00:45] 2025-11-22 22:00:13,449 | INFO     | transexitcode: 65
[2025-11-22 14:00:45] 2025-11-22 22:00:13,449 | INFO     | exeerrorcode: 65
[2025-11-22 14:00:45] 2025-11-22 22:00:13,449 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-22 14:00:45] 2025-11-22 22:00:13,450 | INFO     | exitcode: 65
[2025-11-22 14:00:45] 2025-11-22 22:00:13,450 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-22 14:00:45] 2025-11-22 22:00:13,450 | INFO     | cpuconsumptiontime: 65 s
[2025-11-22 14:00:45] 2025-11-22 22:00:13,450 | INFO     | nevents: 0
[2025-11-22 14:00:45] 2025-11-22 22:00:13,450 | INFO     | neventsw: 0
[2025-11-22 14:00:45] 2025-11-22 22:00:13,450 | INFO     | pid: 1118637
[2025-11-22 14:00:45] 2025-11-22 22:00:13,450 | INFO     | pgrp: 1118637
[2025-11-22 14:00:45] 2025-11-22 22:00:13,450 | INFO     | corecount: 12
[2025-11-22 14:00:45] 2025-11-22 22:00:13,450 | INFO     | event service: False
[2025-11-22 14:00:45] 2025-11-22 22:00:13,450 | INFO     | sizes: {0: 2298702, 1: 2298702, 6: 2298992, 11: 2299020, 88: 2324417, 89: 2328863, 211: 2329001}
[2025-11-22 14:00:45] 2025-11-22 22:00:13,450 | INFO     | --------------------------------------------------
[2025-11-22 14:00:45] 2025-11-22 22:00:13,451 | INFO     | 
[2025-11-22 14:00:45] 2025-11-22 22:00:13,451 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-22 14:00:45] 2025-11-22 22:00:13,474 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 14:00:45] 2025-11-22 22:00:13,474 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 14:00:45] 2025-11-22 22:00:13,474 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 14:00:45] 2025-11-22 22:00:13,474 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 14:00:45] 2025-11-22 22:00:13,475 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 14:00:45] 2025-11-22 22:00:13,475 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 14:00:45] 2025-11-22 22:00:13,475 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 14:00:45] 2025-11-22 22:00:13,475 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 14:00:45] 2025-11-22 22:00:13,475 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 14:00:45] 2025-11-22 22:00:13,475 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 14:00:45] 2025-11-22 22:00:13,475 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 14:00:45] 2025-11-22 22:00:13,475 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 14:00:45] 2025-11-22 22:00:13,475 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 14:00:45] 2025-11-22 22:00:13,475 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 14:00:45] 2025-11-22 22:00:13,475 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 14:00:45] 2025-11-22 22:00:13,475 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 14:00:45] 2025-11-22 22:00:13,476 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 14:00:45] 2025-11-22 22:00:13,476 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 14:00:45] 2025-11-22 22:00:13,476 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 14:00:45] 2025-11-22 22:00:13,476 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 14:00:45] 2025-11-22 22:00:13,476 | INFO     | job 6895339679 has completed (purged errors)
[2025-11-22 14:00:45] 2025-11-22 22:00:13,476 | INFO     | overall cleanup function is called
[2025-11-22 14:00:45] 2025-11-22 22:00:14,484 | INFO     | --- collectZombieJob: --- 10, [1118637]
[2025-11-22 14:00:45] 2025-11-22 22:00:14,484 | INFO     | zombie collector waiting for pid 1118637
[2025-11-22 14:00:45] 2025-11-22 22:00:14,484 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 14:00:45] 2025-11-22 22:00:14,484 | INFO     | collected zombie processes
[2025-11-22 14:00:45] 2025-11-22 22:00:14,484 | INFO     | will attempt to kill all subprocesses of pid=1118637
[2025-11-22 14:00:45] 2025-11-22 22:00:14,762 | INFO     | process IDs to be killed: [1118637] (in reverse order)
[2025-11-22 14:00:45] 2025-11-22 22:00:14,859 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 14:00:45] 2025-11-22 22:00:14,860 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 14:00:45] 2025-11-22 22:00:14,870 | INFO     | did not find any defunct processes belonging to 1118637
[2025-11-22 14:00:45] 2025-11-22 22:00:14,880 | INFO     | did not find any defunct processes belonging to 1118637
[2025-11-22 14:00:45] 2025-11-22 22:00:14,881 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 14:00:45] 2025-11-22 22:00:14,881 | INFO     | ready for new job
[2025-11-22 14:00:45] 2025-11-22 22:00:14,881 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 14:00:45] 2025-11-22 22:00:14,883 | INFO     | ***************************************
[2025-11-22 14:00:45] 2025-11-22 22:00:14,883 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 14:00:45] 2025-11-22 22:00:14,883 | INFO     | ***************************************
[2025-11-22 14:00:45] 2025-11-22 22:00:14,883 | INFO     | 
[2025-11-22 14:00:45] 2025-11-22 22:00:14,886 | INFO     | architecture information:
[2025-11-22 14:00:45] 2025-11-22 22:00:14,887 | INFO     | executing command: cat /etc/os-release
[2025-11-22 14:00:45] 2025-11-22 22:00:14,900 | INFO     | cat /etc/os-release:
[2025-11-22 14:00:45] NAME="CentOS Linux"
[2025-11-22 14:00:45] VERSION="7 (Core)"
[2025-11-22 14:00:45] ID="centos"
[2025-11-22 14:00:45] ID_LIKE="rhel fedora"
[2025-11-22 14:00:45] VERSION_ID="7"
[2025-11-22 14:00:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 14:00:45] ANSI_COLOR="0;31"
[2025-11-22 14:00:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 14:00:45] HOME_URL="https://www.centos.org/"
[2025-11-22 14:00:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 14:00:45] 
[2025-11-22 14:00:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 14:00:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 14:00:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 14:00:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 14:00:45] 
[2025-11-22 14:00:45] 2025-11-22 22:00:14,901 | INFO     | ***************************************
[2025-11-22 14:00:45] 2025-11-22 22:00:15,403 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-22 14:00:45] 2025-11-22 22:00:15,418 | INFO     | sufficient remaining disk space (1059193880576 B)
[2025-11-22 14:00:45] 2025-11-22 22:00:15,418 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 14:00:45] 2025-11-22 22:00:15,419 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 14:00:45] 2025-11-22 22:00:15,419 | INFO     | update_server=False
[2025-11-22 14:00:45] 2025-11-22 22:00:15,419 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 14:00:45] 2025-11-22 22:00:15,419 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 14:00:45] 2025-11-22 22:00:15,420 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 14:00:45] 2025-11-22 22:00:15,482 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 14:00:45] 2025-11-22 22:00:15,482 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 14:00:45] 2025-11-22 22:00:15,482 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:00:45] 2025-11-22 22:00:15,483 | INFO     | will abort loop
[2025-11-22 14:00:45] 2025-11-22 22:00:15,644 | INFO     | all data control threads have been joined
[2025-11-22 14:00:45] 2025-11-22 22:00:16,424 | INFO     | [job] retrieve thread has finished
[2025-11-22 14:00:45] 2025-11-22 22:00:16,467 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 14:00:45] 2025-11-22 22:00:16,487 | INFO     | [job] job monitor thread has finished
[2025-11-22 14:00:45] 2025-11-22 22:00:16,637 | INFO     | all payload control threads have been joined
[2025-11-22 14:00:45] 2025-11-22 22:00:16,649 | INFO     | [data] control thread has finished
[2025-11-22 14:00:45] 2025-11-22 22:00:16,993 | INFO     | all job control threads have been joined
[2025-11-22 14:00:45] 2025-11-22 22:00:17,002 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 14:00:45] 2025-11-22 22:00:17,201 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 14:00:45] 2025-11-22 22:00:17,425 | INFO     | [data] copytool_out thread has finished
[2025-11-22 14:00:45] 2025-11-22 22:00:17,473 | INFO     | [data] copytool_in thread has finished
[2025-11-22 14:00:45] 2025-11-22 22:00:17,497 | INFO     | [payload] failed_post thread has finished
[2025-11-22 14:00:45] 2025-11-22 22:00:17,519 | INFO     | [job] validate thread has finished
[2025-11-22 14:00:45] 2025-11-22 22:00:17,642 | INFO     | [payload] control thread has finished
[2025-11-22 14:00:45] 2025-11-22 22:00:17,780 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 14:00:45] 2025-11-22 22:00:17,844 | INFO     | [payload] validate_post thread has finished
[2025-11-22 14:00:45] 2025-11-22 22:00:17,999 | INFO     | [job] control thread has finished
[2025-11-22 14:00:45] 2025-11-22 22:00:18,390 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:00:45] 2025-11-22 22:00:19,396 | INFO     | [job] queue monitor thread has finished
[2025-11-22 14:00:45] 2025-11-22 22:00:19,426 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 14:00:45] 2025-11-22 22:00:24,645 | INFO     | [monitor] cgroup control has ended
[2025-11-22 14:00:45] 2025-11-22 22:00:25,738 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140565690791744)>', '<ExcThread(monitor, started 140564993394432)>']
[2025-11-22 14:00:45] 2025-11-22 22:00:30,755 | INFO     | all workflow threads have been joined
[2025-11-22 14:00:45] 2025-11-22 22:00:30,755 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 14:00:45] 2025-11-22 22:00:30,756 | INFO     | traces error code: 0
[2025-11-22 14:00:45] 2025-11-22 22:00:30,756 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 14:00:45] 2025-11-22 22:00:45,190 | INFO     | PID=1112051 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 14:00:45] 2025-11-22 22:00:45,192 | INFO     | .. there are 21 such processes running
[2025-11-22 14:00:45] 2025-11-22 22:00:45,192 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 14:00:45] 2025-11-22 22:00:45,193 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 14:00:45] 2025-11-22 22:00:45,193 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 14:00:45] 2025-11-22 22:00:45,193 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 14:00:45] 2025-11-22 22:00:45,193 | CRITICAL | thread 'MainThread' is not alive
[2025-11-22 14:00:45] 2025-11-22 22:00:45,193 | INFO     | [monitor] control thread has ended
[2025-11-22 14:00:45] 2025-11-22 22:00:45,326 [wrapper] ==== pilot stdout END ====
[2025-11-22 14:00:45] 2025-11-22 22:00:45,329 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 14:00:45] 2025-11-22 22:00:45,332 [wrapper] pilotpid: 1112051
[2025-11-22 14:00:45] 2025-11-22 22:00:45,334 [wrapper] Pilot exit status: 0
[2025-11-22 14:00:45] 2025-11-22 22:00:45,346 [wrapper] pandaids: 6895339679
[2025-11-22 14:00:45] 2025-11-22 22:00:45,405 [wrapper] cleanup supervisor_pilot 1112057 1112052
[2025-11-22 14:00:45] 2025-11-22 22:00:45,408 [wrapper] Test setup, not cleaning
[2025-11-22 14:00:45] 2025-11-22 22:00:45,411 [wrapper] apfmon messages muted
[2025-11-22 14:00:45] 2025-11-22 22:00:45,413 [wrapper] ==== wrapper stdout END ====
[2025-11-22 14:00:45] 2025-11-22 22:00:45,416 [wrapper] ==== wrapper stderr END ====
[2025-11-22 14:00:45]  *** Error codes and diagnostics ***
[2025-11-22 14:00:45]     "exeErrorCode": 65,
[2025-11-22 14:00:45]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-22 14:00:45]     "pilotErrorCode": 1305,
[2025-11-22 14:00:45]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-22 14:00:45]  *** Listing of results directory ***
[2025-11-22 14:00:45] total 401676
[2025-11-22 14:00:45] -rw-r--r--. 1 boinc boinc    576529 Nov 22 03:19 pilot3.tar.gz
[2025-11-22 14:00:45] -rw-r--r--. 1 boinc boinc      5112 Nov 22 03:20 queuedata.json
[2025-11-22 14:00:45] -rwx------. 1 boinc boinc     36292 Nov 22 03:21 runpilot2-wrapper.sh
[2025-11-22 14:00:45] -rw-r--r--. 1 boinc boinc       100 Nov 22 13:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 14:00:45] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 13:56 run_atlas
[2025-11-22 14:00:45] -rw-r--r--. 1 boinc boinc       105 Nov 22 13:56 job.xml
[2025-11-22 14:00:45] -rw-r--r--. 2 boinc boinc 407115271 Nov 22 13:56 EVNT.47483658._000357.pool.root.1
[2025-11-22 14:00:45] -rw-r--r--. 1 boinc boinc      6593 Nov 22 13:56 init_data.xml
[2025-11-22 14:00:45] -rw-r--r--. 2 boinc boinc     15847 Nov 22 13:56 start_atlas.sh
[2025-11-22 14:00:45] drwxrwx--x. 2 boinc boinc      4096 Nov 22 13:56 shared
[2025-11-22 14:00:45] -rw-r--r--. 2 boinc boinc    590103 Nov 22 13:56 input.tar.gz
[2025-11-22 14:00:45] -rw-r--r--. 1 boinc boinc         0 Nov 22 13:56 boinc_lockfile
[2025-11-22 14:00:45] -rw-r--r--. 1 boinc boinc      2784 Nov 22 13:56 pandaJob.out
[2025-11-22 14:00:45] -rw-------. 1 boinc boinc    989768 Nov 22 13:56 agis_schedconf.cvmfs.json
[2025-11-22 14:00:45] -rw-------. 1 boinc boinc   1526164 Nov 22 13:56 agis_ddmendpoints.agis.ALL.json
[2025-11-22 14:00:45] drwx------. 5 boinc boinc      4096 Nov 22 13:56 pilot3
[2025-11-22 14:00:45] -rw-r--r--. 1 boinc boinc       523 Nov 22 13:57 boinc_task_state.xml
[2025-11-22 14:00:45] -rw-------. 1 boinc boinc      1015 Nov 22 13:58 memory_monitor_summary.json
[2025-11-22 14:00:45] -rw-------. 1 boinc boinc     48718 Nov 22 13:58 log.47556137._003536.job.log.tgz.1
[2025-11-22 14:00:45] -rw-------. 1 boinc boinc     10336 Nov 22 14:00 heartbeat.json
[2025-11-22 14:00:45] -rw-r--r--. 1 boinc boinc      8192 Nov 22 14:00 boinc_mmap_file
[2025-11-22 14:00:45] -rw-r--r--. 1 boinc boinc        23 Nov 22 14:00 wrapper_checkpoint.txt
[2025-11-22 14:00:45] -rw-------. 1 boinc boinc        95 Nov 22 14:00 pilot_heartbeat.json
[2025-11-22 14:00:45] -rw-------. 1 boinc boinc       893 Nov 22 14:00 pilotlog.txt
[2025-11-22 14:00:45] -rw-------. 1 boinc boinc     96551 Nov 22 14:00 log.47556137._003536.job.log.1
[2025-11-22 14:00:45] -rw-------. 1 boinc boinc       186 Nov 22 14:00 output.list
[2025-11-22 14:00:45] -rw-r--r--. 1 boinc boinc       620 Nov 22 14:00 runtime_log
[2025-11-22 14:00:45] -rw-------. 1 boinc boinc    163840 Nov 22 14:00 result.tar.gz
[2025-11-22 14:00:45] -rw-------. 1 boinc boinc       645 Nov 22 14:00 YXPODmRr0g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmW8JKDmiPhBvm.diag
[2025-11-22 14:00:45] -rw-r--r--. 1 boinc boinc      8636 Nov 22 14:00 runtime_log.err
[2025-11-22 14:00:45] -rw-r--r--. 1 boinc boinc     22391 Nov 22 14:00 stderr.txt
[2025-11-22 14:00:45] No HITS result produced
[2025-11-22 14:00:45]  *** Contents of shared directory: ***
[2025-11-22 14:00:45] total 398336
[2025-11-22 14:00:45] -rw-r--r--. 2 boinc boinc 407115271 Nov 22 13:56 ATLAS.root_0
[2025-11-22 14:00:45] -rw-r--r--. 2 boinc boinc     15847 Nov 22 13:56 start_atlas.sh
[2025-11-22 14:00:45] -rw-r--r--. 2 boinc boinc    590103 Nov 22 13:56 input.tar.gz
[2025-11-22 14:00:45] -rw-------. 1 boinc boinc    163840 Nov 22 14:00 result.tar.gz
14:00:46 (1108387): run_atlas exited; CPU time 61.943570
14:00:46 (1108387): called boinc_finish(0)

</stderr_txt>
]]>

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