Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:02:12 (1190657): wrapper (7.7.26015): starting
00:02:12 (1190657): wrapper: running run_atlas (--nthreads 6)
[2025-11-24 00:02:12] Arguments: --nthreads 6
[2025-11-24 00:02:12] Threads: 6
[2025-11-24 00:02:12] Checking for CVMFS
[2025-11-24 00:02:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:02:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:02:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:02:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:02:13] 2.13.3.0 900246 1304 67924 153211 2 81 18297121 20971521 916 130560 0 978280 99.988 44912 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-11-24 00:02:13] CVMFS is ok
[2025-11-24 00:02:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:02:13] Checking for apptainer binary...
[2025-11-24 00:02:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:02:13] Running /usr/bin/apptainer --version
[2025-11-24 00:02:13] apptainer version 1.4.4-1.el9
[2025-11-24 00:02:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:02:13] testio005
[2025-11-24 00:02:13] apptainer works
[2025-11-24 00:02:13] Set ATHENA_PROC_NUMBER=6
[2025-11-24 00:02:13] Set ATHENA_CORE_NUMBER=6
[2025-11-24 00:02:13] Starting ATLAS job with PandaID=6895324409
[2025-11-24 00:02:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 11:24:00]  *** The last 200 lines of the pilot log: ***
[2025-11-24 11:24:00] 2025-11-24 02:23:03,265 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 11:24:00] 2025-11-24 02:23:03,265 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 11:24:00] 2025-11-24 02:23:03,274 | INFO     | fitting pss+swap vs Time
[2025-11-24 11:24:00] 2025-11-24 02:23:03,275 | INFO     | sum of square deviations: 92428614226.90427
[2025-11-24 11:24:00] 2025-11-24 02:23:03,284 | INFO     | sum of deviations: 724703293149.7405
[2025-11-24 11:24:00] 2025-11-24 02:23:03,284 | INFO     | mean x: 1763930536.511976
[2025-11-24 11:24:00] 2025-11-24 02:23:03,284 | INFO     | mean y: 2676054.22005988
[2025-11-24 11:24:00] 2025-11-24 02:23:03,285 | INFO     | intersect: -13827740850.651379
[2025-11-24 11:24:00] 2025-11-24 02:23:03,285 | INFO     | chi2: 10.964011418987106
[2025-11-24 11:24:00] 2025-11-24 02:23:03,286 | INFO     | sum of square deviations: 90368615251.90337
[2025-11-24 11:24:00] 2025-11-24 02:23:03,295 | INFO     | sum of deviations: 928179986012.6963
[2025-11-24 11:24:00] 2025-11-24 02:23:03,295 | INFO     | mean x: 1763930384.0120664
[2025-11-24 11:24:00] 2025-11-24 02:23:03,296 | INFO     | mean y: 2691113.1628959277
[2025-11-24 11:24:00] 2025-11-24 02:23:03,296 | INFO     | intersect: -18114714742.79555
[2025-11-24 11:24:00] 2025-11-24 02:23:03,296 | INFO     | chi2: 7.912536748585943
[2025-11-24 11:24:00] 2025-11-24 02:23:03,297 | INFO     | current chi2=7.912536748585943 (change=27.83173561016839 %)
[2025-11-24 11:24:00] 2025-11-24 02:23:03,297 | INFO     | sum of square deviations: 88339454064.40274
[2025-11-24 11:24:00] 2025-11-24 02:23:03,306 | INFO     | sum of deviations: 1092220018897.8529
[2025-11-24 11:24:00] 2025-11-24 02:23:03,306 | INFO     | mean x: 1763930231.5121582
[2025-11-24 11:24:00] 2025-11-24 02:23:03,306 | INFO     | mean y: 2703423.9559270516
[2025-11-24 11:24:00] 2025-11-24 02:23:03,306 | INFO     | intersect: -21806350426.344532
[2025-11-24 11:24:00] 2025-11-24 02:23:03,307 | INFO     | chi2: 5.640015277191122
[2025-11-24 11:24:00] 2025-11-24 02:23:03,307 | INFO     | current chi2=5.640015277191122 (change=28.720517118621224 %)
[2025-11-24 11:24:00] 2025-11-24 02:23:03,308 | INFO     | sum of square deviations: 86340898101.90192
[2025-11-24 11:24:00] 2025-11-24 02:23:03,316 | INFO     | sum of deviations: 1121308420020.686
[2025-11-24 11:24:00] 2025-11-24 02:23:03,317 | INFO     | mean x: 1763930079.0122511
[2025-11-24 11:24:00] 2025-11-24 02:23:03,317 | INFO     | mean y: 2705632.9142419603
[2025-11-24 11:24:00] 2025-11-24 02:23:03,317 | INFO     | intersect: -22905437476.621258
[2025-11-24 11:24:00] 2025-11-24 02:23:03,317 | INFO     | chi2: 5.418437894757069
[2025-11-24 11:24:00] 2025-11-24 02:23:03,318 | INFO     | current chi2=5.418437894757069 (change=3.9286663518472564 %)
[2025-11-24 11:24:00] 2025-11-24 02:23:03,318 | INFO     | right removable region: 652
[2025-11-24 11:24:00] 2025-11-24 02:23:03,318 | INFO     | sum of square deviations: 90368610371.90337
[2025-11-24 11:24:00] 2025-11-24 02:23:03,327 | INFO     | sum of deviations: 512980877546.7203
[2025-11-24 11:24:00] 2025-11-24 02:23:03,327 | INFO     | mean x: 1763930689.0120664
[2025-11-24 11:24:00] 2025-11-24 02:23:03,327 | INFO     | mean y: 2691721.159879336
[2025-11-24 11:24:00] 2025-11-24 02:23:03,328 | INFO     | intersect: -10010328386.786064
[2025-11-24 11:24:00] 2025-11-24 02:23:03,328 | INFO     | chi2: 7.943143596979935
[2025-11-24 11:24:00] 2025-11-24 02:23:03,328 | INFO     | current chi2=7.943143596979935 (change=27.552578217637873 %)
[2025-11-24 11:24:00] 2025-11-24 02:23:03,329 | INFO     | sum of square deviations: 88339444304.40274
[2025-11-24 11:24:00] 2025-11-24 02:23:03,338 | INFO     | sum of deviations: 341472912255.185
[2025-11-24 11:24:00] 2025-11-24 02:23:03,338 | INFO     | mean x: 1763930841.5121582
[2025-11-24 11:24:00] 2025-11-24 02:23:03,338 | INFO     | mean y: 2704606.539513678
[2025-11-24 11:24:00] 2025-11-24 02:23:03,338 | INFO     | intersect: -6815705971.099541
[2025-11-24 11:24:00] 2025-11-24 02:23:03,339 | INFO     | chi2: 6.080252414382951
[2025-11-24 11:24:00] 2025-11-24 02:23:03,339 | INFO     | current chi2=6.080252414382951 (change=23.452820156811395 %)
[2025-11-24 11:24:00] 2025-11-24 02:23:03,339 | INFO     | left removable region: 20
[2025-11-24 11:24:00] 2025-11-24 02:23:03,340 | INFO     | sum of square deviations: 78275904125.89873
[2025-11-24 11:24:00] 2025-11-24 02:23:03,349 | INFO     | sum of deviations: 638264830605.6263
[2025-11-24 11:24:00] 2025-11-24 02:23:03,349 | INFO     | mean x: 1763930658.512658
[2025-11-24 11:24:00] 2025-11-24 02:23:03,349 | INFO     | mean y: 2743269.609177215
[2025-11-24 11:24:00] 2025-11-24 02:23:03,349 | INFO     | intersect: -14380417366.195568
[2025-11-24 11:24:00] 2025-11-24 02:23:03,350 | INFO     | chi2: 0.1654565888369154
[2025-11-24 11:24:00] 2025-11-24 02:23:03,350 | INFO     | current memory leak: 8.15 B/s (using 632 data points, chi2=0.17)
[2025-11-24 11:24:00] 2025-11-24 02:23:03,351 | INFO     | could have reported an average CPU frequency of 3298 MHz (25 samples)
[2025-11-24 11:24:00] 2025-11-24 02:23:03,351 | INFO     | ..............................
[2025-11-24 11:24:00] 2025-11-24 02:23:03,351 | INFO     | . Timing measurements:
[2025-11-24 11:24:00] 2025-11-24 02:23:03,351 | INFO     | . get job = 0 s
[2025-11-24 11:24:00] 2025-11-24 02:23:03,351 | INFO     | . initial setup = 8 s
[2025-11-24 11:24:00] 2025-11-24 02:23:03,351 | INFO     | . payload setup = 6 s
[2025-11-24 11:24:00] 2025-11-24 02:23:03,351 | INFO     | . stage-in = 0 s
[2025-11-24 11:24:00] 2025-11-24 02:23:03,351 | INFO     | . payload execution = 40701 s
[2025-11-24 11:24:00] 2025-11-24 02:23:03,351 | INFO     | . stage-out = 8 s
[2025-11-24 11:24:00] 2025-11-24 02:23:03,351 | INFO     | . log creation = 0 s
[2025-11-24 11:24:00] 2025-11-24 02:23:03,351 | INFO     | ..............................
[2025-11-24 11:24:00] 2025-11-24 02:23:03,560 | INFO     | 
[2025-11-24 11:24:00] 2025-11-24 02:23:03,560 | INFO     | job summary report
[2025-11-24 11:24:00] 2025-11-24 02:23:03,560 | INFO     | --------------------------------------------------
[2025-11-24 11:24:00] 2025-11-24 02:23:03,560 | INFO     | PanDA job id: 6895324409
[2025-11-24 11:24:00] 2025-11-24 02:23:03,560 | INFO     | task id: 47556137
[2025-11-24 11:24:00] 2025-11-24 02:23:03,561 | INFO     | errors: (none)
[2025-11-24 11:24:00] 2025-11-24 02:23:03,561 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 11:24:00] 2025-11-24 02:23:03,561 | INFO     | pilot state: finished 
[2025-11-24 11:24:00] 2025-11-24 02:23:03,561 | INFO     | transexitcode: 0
[2025-11-24 11:24:00] 2025-11-24 02:23:03,561 | INFO     | exeerrorcode: 0
[2025-11-24 11:24:00] 2025-11-24 02:23:03,561 | INFO     | exeerrordiag: 
[2025-11-24 11:24:00] 2025-11-24 02:23:03,561 | INFO     | exitcode: 0
[2025-11-24 11:24:00] 2025-11-24 02:23:03,561 | INFO     | exitmsg: OK
[2025-11-24 11:24:00] 2025-11-24 02:23:03,561 | INFO     | cpuconsumptiontime: 227788 s
[2025-11-24 11:24:00] 2025-11-24 02:23:03,561 | INFO     | nevents: 1000
[2025-11-24 11:24:00] 2025-11-24 02:23:03,561 | INFO     | neventsw: 0
[2025-11-24 11:24:00] 2025-11-24 02:23:03,562 | INFO     | pid: 1201129
[2025-11-24 11:24:00] 2025-11-24 02:23:03,562 | INFO     | pgrp: 1201129
[2025-11-24 11:24:00] 2025-11-24 02:23:03,562 | INFO     | corecount: 6
[2025-11-24 11:24:00] 2025-11-24 02:23:03,562 | INFO     | event service: False
[2025-11-24 11:24:00] 2025-11-24 02:23:03,562 | INFO     | sizes: {0: 2298803, 4: 2299065, 11: 2299093, 40711: 2342464, 40720: 2351458, 40723: 2351514, 40802: 2351952}
[2025-11-24 11:24:00] 2025-11-24 02:23:03,562 | INFO     | --------------------------------------------------
[2025-11-24 11:24:00] 2025-11-24 02:23:03,562 | INFO     | 
[2025-11-24 11:24:00] 2025-11-24 02:23:03,562 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-11-24 11:24:00] 2025-11-24 02:23:03,581 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 11:24:00] 2025-11-24 02:23:03,581 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 11:24:00] 2025-11-24 02:23:03,581 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 11:24:00] 2025-11-24 02:23:03,581 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 11:24:00] 2025-11-24 02:23:03,581 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 11:24:00] 2025-11-24 02:23:03,581 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 11:24:00] 2025-11-24 02:23:03,582 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 11:24:00] 2025-11-24 02:23:03,582 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 11:24:00] 2025-11-24 02:23:03,582 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 11:24:00] 2025-11-24 02:23:03,582 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 11:24:00] 2025-11-24 02:23:03,582 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 11:24:00] 2025-11-24 02:23:03,582 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 11:24:00] 2025-11-24 02:23:03,582 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 11:24:00] 2025-11-24 02:23:03,582 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 11:24:00] 2025-11-24 02:23:03,582 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 11:24:00] 2025-11-24 02:23:03,582 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 11:24:00] 2025-11-24 02:23:03,582 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 11:24:00] 2025-11-24 02:23:03,582 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 11:24:00] 2025-11-24 02:23:03,583 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 11:24:00] 2025-11-24 02:23:03,583 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 11:24:00] 2025-11-24 02:23:03,583 | INFO     | job 6895324409 has completed (purged errors)
[2025-11-24 11:24:00] 2025-11-24 02:23:03,583 | INFO     | overall cleanup function is called
[2025-11-24 11:24:00] 2025-11-24 02:23:04,599 | INFO     | --- collectZombieJob: --- 10, [1201129]
[2025-11-24 11:24:00] 2025-11-24 02:23:04,599 | INFO     | zombie collector waiting for pid 1201129
[2025-11-24 11:24:00] 2025-11-24 02:23:04,599 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 11:24:00] 2025-11-24 02:23:04,599 | INFO     | collected zombie processes
[2025-11-24 11:24:00] 2025-11-24 02:23:04,599 | INFO     | will attempt to kill all subprocesses of pid=1201129
[2025-11-24 11:24:00] 2025-11-24 02:23:04,712 | INFO     | process IDs to be killed: [1201129] (in reverse order)
[2025-11-24 11:24:00] 2025-11-24 02:23:04,761 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 11:24:00] 2025-11-24 02:23:04,761 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 11:24:00] 2025-11-24 02:23:04,765 | INFO     | did not find any defunct processes belonging to 1201129
[2025-11-24 11:24:00] 2025-11-24 02:23:04,769 | INFO     | did not find any defunct processes belonging to 1201129
[2025-11-24 11:24:00] 2025-11-24 02:23:04,770 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 11:24:00] 2025-11-24 02:23:04,771 | INFO     | ready for new job
[2025-11-24 11:24:00] 2025-11-24 02:23:04,771 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 11:24:00] 2025-11-24 02:23:04,774 | INFO     | ***************************************
[2025-11-24 11:24:00] 2025-11-24 02:23:04,774 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 11:24:00] 2025-11-24 02:23:04,774 | INFO     | ***************************************
[2025-11-24 11:24:00] 2025-11-24 02:23:04,774 | INFO     | 
[2025-11-24 11:24:00] 2025-11-24 02:23:04,775 | INFO     | architecture information:
[2025-11-24 11:24:00] 2025-11-24 02:23:04,776 | INFO     | executing command: cat /etc/os-release
[2025-11-24 11:24:00] 2025-11-24 02:23:04,791 | INFO     | cat /etc/os-release:
[2025-11-24 11:24:00] NAME="CentOS Linux"
[2025-11-24 11:24:00] VERSION="7 (Core)"
[2025-11-24 11:24:00] ID="centos"
[2025-11-24 11:24:00] ID_LIKE="rhel fedora"
[2025-11-24 11:24:00] VERSION_ID="7"
[2025-11-24 11:24:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 11:24:00] ANSI_COLOR="0;31"
[2025-11-24 11:24:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 11:24:00] HOME_URL="https://www.centos.org/"
[2025-11-24 11:24:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 11:24:00] 
[2025-11-24 11:24:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 11:24:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 11:24:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 11:24:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 11:24:00] 
[2025-11-24 11:24:00] 2025-11-24 02:23:04,791 | INFO     | ***************************************
[2025-11-24 11:24:00] 2025-11-24 02:23:05,293 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-11-24 11:24:00] 2025-11-24 02:23:05,310 | INFO     | sufficient remaining disk space (90496303104 B)
[2025-11-24 11:24:00] 2025-11-24 02:23:05,310 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 11:24:00] 2025-11-24 02:23:05,311 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 11:24:00] 2025-11-24 02:23:05,311 | INFO     | update_server=False
[2025-11-24 11:24:00] 2025-11-24 02:23:05,311 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 11:24:00] 2025-11-24 02:23:05,311 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 11:24:00] 2025-11-24 02:23:05,946 | INFO     | all data control threads have been joined
[2025-11-24 11:24:00] 2025-11-24 02:23:06,014 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 11:24:00] 2025-11-24 02:23:06,014 | INFO     | aborting loop
[2025-11-24 11:24:00] 2025-11-24 02:23:06,049 | INFO     | all job control threads have been joined
[2025-11-24 11:24:00] 2025-11-24 02:23:06,299 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 11:24:00] 2025-11-24 02:23:06,316 | INFO     | [job] retrieve thread has finished
[2025-11-24 11:24:00] 2025-11-24 02:23:06,316 | INFO     | [job] queue monitor thread has finished
[2025-11-24 11:24:00] 2025-11-24 02:23:06,364 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 11:24:00] 2025-11-24 02:23:06,409 | INFO     | all payload control threads have been joined
[2025-11-24 11:24:00] 2025-11-24 02:23:06,412 | INFO     | [job] validate thread has finished
[2025-11-24 11:24:00] 2025-11-24 02:23:06,478 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 11:24:00] 2025-11-24 02:23:06,678 | INFO     | [data] copytool_in thread has finished
[2025-11-24 11:24:00] 2025-11-24 02:23:06,951 | INFO     | [data] control thread has finished
[2025-11-24 11:24:00] 2025-11-24 02:23:07,020 | INFO     | [job] job monitor thread has finished
[2025-11-24 11:24:00] 2025-11-24 02:23:07,053 | INFO     | [job] control thread has finished
[2025-11-24 11:24:00] 2025-11-24 02:23:07,107 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 11:24:00] 2025-11-24 02:23:07,112 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 11:24:00] 2025-11-24 02:23:07,212 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 11:24:00] 2025-11-24 02:23:07,414 | INFO     | [payload] control thread has finished
[2025-11-24 11:24:00] 2025-11-24 02:23:07,446 | INFO     | [payload] failed_post thread has finished
[2025-11-24 11:24:00] 2025-11-24 02:23:07,794 | INFO     | [payload] validate_post thread has finished
[2025-11-24 11:24:00] 2025-11-24 02:23:08,304 | INFO     | [data] copytool_out thread has finished
[2025-11-24 11:24:00] 2025-11-24 02:23:10,484 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 11:24:00] 2025-11-24 02:23:35,536 | INFO     | PID=1194431 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 11:24:00] 2025-11-24 02:23:35,537 | INFO     | .. there are 2 such processes running
[2025-11-24 11:24:00] 2025-11-24 02:23:35,537 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 11:24:00] 2025-11-24 02:23:35,537 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 11:24:00] 2025-11-24 02:23:35,537 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 11:24:00] 2025-11-24 02:23:53,601 | INFO     | [monitor] cgroup control has ended
[2025-11-24 11:24:00] 2025-11-24 02:23:55,237 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140693362059072)>', '<ExcThread(monitor, started 140692651239168)>']
[2025-11-24 11:24:00] 2025-11-24 02:23:55,635 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 11:24:00] 2025-11-24 02:23:55,635 | INFO     | [monitor] control thread has ended
[2025-11-24 11:24:00] 2025-11-24 02:24:00,263 | INFO     | all workflow threads have been joined
[2025-11-24 11:24:00] 2025-11-24 02:24:00,263 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 11:24:00] 2025-11-24 02:24:00,263 | INFO     | traces error code: 0
[2025-11-24 11:24:00] 2025-11-24 02:24:00,263 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 11:24:00] 2025-11-24 02:24:00,375 [wrapper] ==== pilot stdout END ====
[2025-11-24 11:24:00] 2025-11-24 02:24:00,378 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 11:24:00] 2025-11-24 02:24:00,381 [wrapper] pilotpid: 1194431
[2025-11-24 11:24:00] 2025-11-24 02:24:00,384 [wrapper] Pilot exit status: 0
[2025-11-24 11:24:00] 2025-11-24 02:24:00,394 [wrapper] pandaids: 6895324409
[2025-11-24 11:24:00] 2025-11-24 02:24:00,423 [wrapper] cleanup supervisor_pilot 1332469 1194432
[2025-11-24 11:24:00] 2025-11-24 02:24:00,426 [wrapper] Test setup, not cleaning
[2025-11-24 11:24:00] 2025-11-24 02:24:00,429 [wrapper] apfmon messages muted
[2025-11-24 11:24:00] 2025-11-24 02:24:00,432 [wrapper] ==== wrapper stdout END ====
[2025-11-24 11:24:00] 2025-11-24 02:24:00,434 [wrapper] ==== wrapper stderr END ====
[2025-11-24 11:24:00]  *** Error codes and diagnostics ***
[2025-11-24 11:24:00]     "exeErrorCode": 0,
[2025-11-24 11:24:00]     "exeErrorDiag": "",
[2025-11-24 11:24:00]     "pilotErrorCode": 0,
[2025-11-24 11:24:00]     "pilotErrorDiag": "",
[2025-11-24 11:24:00]  *** Listing of results directory ***
[2025-11-24 11:24:00] total 1318140
[2025-11-24 11:24:00] -rw-r--r--. 1 boinc boinc    576529 Nov 21 22:51 pilot3.tar.gz
[2025-11-24 11:24:00] -rwx------. 1 boinc boinc     36292 Nov 21 23:21 runpilot2-wrapper.sh
[2025-11-24 11:24:00] -rw-r--r--. 1 boinc boinc      5112 Nov 21 23:21 queuedata.json
[2025-11-24 11:24:00] -rw-r--r--. 1 boinc boinc       100 Nov 24 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 11:24:00] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 00:02 run_atlas
[2025-11-24 11:24:00] -rw-r--r--. 1 boinc boinc       105 Nov 24 00:02 job.xml
[2025-11-24 11:24:00] -rw-r--r--. 2 boinc boinc 408045104 Nov 24 00:02 EVNT.47483658._000021.pool.root.1
[2025-11-24 11:24:00] -rw-r--r--. 2 boinc boinc     15847 Nov 24 00:02 start_atlas.sh
[2025-11-24 11:24:00] drwxrwx--x. 2 boinc boinc        68 Nov 24 00:02 shared
[2025-11-24 11:24:00] -rw-r--r--. 2 boinc boinc    590098 Nov 24 00:02 input.tar.gz
[2025-11-24 11:24:00] -rw-r--r--. 1 boinc boinc         0 Nov 24 00:02 boinc_lockfile
[2025-11-24 11:24:00] -rw-r--r--. 1 boinc boinc      2784 Nov 24 00:02 pandaJob.out
[2025-11-24 11:24:00] -rw-------. 1 boinc boinc    989785 Nov 24 00:02 agis_schedconf.cvmfs.json
[2025-11-24 11:24:00] drwx------. 5 boinc boinc      4096 Nov 24 00:02 pilot3
[2025-11-24 11:24:00] -rw-r--r--. 1 boinc boinc      9372 Nov 24 07:04 init_data.xml
[2025-11-24 11:24:00] -rw-r--r--. 1 boinc boinc       533 Nov 24 11:08 boinc_task_state.xml
[2025-11-24 11:24:00] -rw-------. 1 boinc boinc 923045276 Nov 24 11:21 HITS.47556137._000209.pool.root.1
[2025-11-24 11:24:00] -rw-------. 1 boinc boinc      1033 Nov 24 11:21 memory_monitor_summary.json
[2025-11-24 11:24:00] -rw-------. 1 boinc boinc   1526164 Nov 24 11:21 agis_ddmendpoints.agis.ALL.json
[2025-11-24 11:24:00] -rw-------. 1 boinc boinc   1698447 Nov 24 11:21 log.47556137._000209.job.log.tgz.1
[2025-11-24 11:24:00] -rw-------. 1 boinc boinc        95 Nov 24 11:22 pilot_heartbeat.json
[2025-11-24 11:24:00] -rw-------. 1 boinc boinc      8572 Nov 24 11:23 heartbeat.json
[2025-11-24 11:24:00] -rw-r--r--. 1 boinc boinc      8192 Nov 24 11:23 boinc_mmap_file
[2025-11-24 11:24:00] -rw-r--r--. 1 boinc boinc        29 Nov 24 11:23 wrapper_checkpoint.txt
[2025-11-24 11:24:00] -rw-------. 1 boinc boinc      4823 Nov 24 11:24 pilotlog.txt
[2025-11-24 11:24:00] -rw-------. 1 boinc boinc   5687204 Nov 24 11:24 log.47556137._000209.job.log.1
[2025-11-24 11:24:00] -rw-------. 1 boinc boinc       353 Nov 24 11:24 output.list
[2025-11-24 11:24:00] -rw-r--r--. 1 boinc boinc       620 Nov 24 11:24 runtime_log
[2025-11-24 11:24:00] -rw-------. 1 boinc boinc   7403520 Nov 24 11:24 result.tar.gz
[2025-11-24 11:24:00] -rw-------. 1 boinc boinc       652 Nov 24 11:24 w3dNDmGChg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAfHKDmx4koRn.diag
[2025-11-24 11:24:00] -rw-r--r--. 1 boinc boinc      8776 Nov 24 11:24 runtime_log.err
[2025-11-24 11:24:00] -rw-r--r--. 1 boinc boinc     20786 Nov 24 11:24 stderr.txt
[2025-11-24 11:24:00] HITS file was successfully produced:
[2025-11-24 11:24:00] -rw-------. 1 boinc boinc 923045276 Nov 24 11:21 shared/HITS.pool.root.1
[2025-11-24 11:24:00]  *** Contents of shared directory: ***
[2025-11-24 11:24:00] total 1307724
[2025-11-24 11:24:00] -rw-r--r--. 2 boinc boinc 408045104 Nov 24 00:02 ATLAS.root_0
[2025-11-24 11:24:00] -rw-r--r--. 2 boinc boinc     15847 Nov 24 00:02 start_atlas.sh
[2025-11-24 11:24:00] -rw-r--r--. 2 boinc boinc    590098 Nov 24 00:02 input.tar.gz
[2025-11-24 11:24:00] -rw-------. 1 boinc boinc 923045276 Nov 24 11:21 HITS.pool.root.1
[2025-11-24 11:24:00] -rw-------. 1 boinc boinc   7403520 Nov 24 11:24 result.tar.gz
11:24:01 (1190657): run_atlas exited; CPU time 227798.426426
11:24:01 (1190657): called boinc_finish(0)

</stderr_txt>
]]>

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