Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:38:27 (28081): wrapper (7.7.26015): starting
12:38:27 (28081): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 12:38:27] Arguments: --nthreads 8
[2025-11-25 12:38:27] Threads: 8
[2025-11-25 12:38:27] Checking for CVMFS
[2025-11-25 12:38:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 12:38:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 12:38:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 12:38:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 12:38:29] 2.11.2.0 9859 283737 135076 153281 1 236 24447194 25165825 4232 130560 12 147210144 99.888 85579915 3258 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 12:38:29] CVMFS is ok
[2025-11-25 12:38:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 12:38:29] Checking for apptainer binary...
[2025-11-25 12:38:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 12:38:29] Running /usr/bin/apptainer --version
[2025-11-25 12:38:29] apptainer version 1.3.2-1.el7
[2025-11-25 12:38:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 12:38:37] cg-vwn461.simple-grid.lan
[2025-11-25 12:38:37] apptainer works
[2025-11-25 12:38:37] Set ATHENA_PROC_NUMBER=8
[2025-11-25 12:38:37] Set ATHENA_CORE_NUMBER=8
[2025-11-25 12:38:37] Starting ATLAS job with PandaID=6895332009
[2025-11-25 12:38:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 11:18:06]  *** The last 200 lines of the pilot log: ***
[2025-11-26 11:18:06] 2025-11-26 10:16:45,540 | INFO     | monitor loop #5480: job 0:6895332009 is in state 'finished'
[2025-11-26 11:18:06] 2025-11-26 10:16:45,540 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:18:06] 2025-11-26 10:16:46,573 | INFO     | time since job start (81312s) is within the limit (172800.0s)
[2025-11-26 11:18:06] 2025-11-26 10:16:48,046 | INFO     | monitor loop #5481: job 0:6895332009 is in state 'finished'
[2025-11-26 11:18:06] 2025-11-26 10:16:48,046 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:18:06] 2025-11-26 10:16:48,579 | INFO     | time since job start (81314s) is within the limit (172800.0s)
[2025-11-26 11:18:06] 2025-11-26 10:16:50,553 | INFO     | monitor loop #5482: job 0:6895332009 is in state 'finished'
[2025-11-26 11:18:06] 2025-11-26 10:16:50,553 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:18:06] 2025-11-26 10:16:50,587 | INFO     | time since job start (81316s) is within the limit (172800.0s)
[2025-11-26 11:18:06] 2025-11-26 10:16:52,595 | INFO     | time since job start (81318s) is within the limit (172800.0s)
[2025-11-26 11:18:06] 2025-11-26 10:16:53,064 | INFO     | monitor loop #5483: job 0:6895332009 is in state 'finished'
[2025-11-26 11:18:06] 2025-11-26 10:16:53,064 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:18:06] 2025-11-26 10:16:54,602 | INFO     | time since job start (81320s) is within the limit (172800.0s)
[2025-11-26 11:18:06] 2025-11-26 10:16:55,568 | INFO     | monitor loop #5484: job 0:6895332009 is in state 'finished'
[2025-11-26 11:18:06] 2025-11-26 10:16:55,568 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:18:06] 2025-11-26 10:16:56,611 | INFO     | time since job start (81322s) is within the limit (172800.0s)
[2025-11-26 11:18:06] 2025-11-26 10:16:57,437 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 11:18:06] 2025-11-26 10:16:57,438 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2250.0
[2025-11-26 11:18:06] 2025-11-26 10:16:57,440 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6895332009/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 11:18:06] 2025-11-26 10:16:57,440 | INFO     | extracted standard info from prmon json
[2025-11-26 11:18:06] 2025-11-26 10:16:57,441 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 11:18:06] 2025-11-26 10:16:57,441 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 11:18:06] 2025-11-26 10:16:57,466 | INFO     | fitting pss+swap vs Time
[2025-11-26 11:18:06] 2025-11-26 10:16:57,468 | INFO     | sum of square deviations: 721315763615.196
[2025-11-26 11:18:06] 2025-11-26 10:16:57,598 | INFO     | sum of deviations: 3211591204245.637
[2025-11-26 11:18:06] 2025-11-26 10:16:57,598 | INFO     | mean x: 1764111677.0535848
[2025-11-26 11:18:06] 2025-11-26 10:16:57,599 | INFO     | mean y: 2837805.7373584905
[2025-11-26 11:18:06] 2025-11-26 10:16:57,599 | INFO     | intersect: -7851705004.940452
[2025-11-26 11:18:06] 2025-11-26 10:16:57,600 | INFO     | chi2: 23.50945131737462
[2025-11-26 11:18:06] 2025-11-26 10:16:57,602 | INFO     | sum of square deviations: 713181115929.6248
[2025-11-26 11:18:06] 2025-11-26 10:16:57,662 | INFO     | sum of deviations: 3670201501499.58
[2025-11-26 11:18:06] 2025-11-26 10:16:57,663 | INFO     | mean x: 1764111524.5575757
[2025-11-26 11:18:06] 2025-11-26 10:16:57,663 | INFO     | mean y: 2846402.703030303
[2025-11-26 11:18:06] 2025-11-26 10:16:57,663 | INFO     | intersect: -9075695669.746956
[2025-11-26 11:18:06] 2025-11-26 10:16:57,665 | INFO     | chi2: 20.065101373620962
[2025-11-26 11:18:06] 2025-11-26 10:16:57,665 | INFO     | current chi2=20.065101373620962 (change=14.650915911457773 %)
[2025-11-26 11:18:06] 2025-11-26 10:16:57,665 | INFO     | right removable region: 1319
[2025-11-26 11:18:06] 2025-11-26 10:16:57,667 | INFO     | sum of square deviations: 713180264369.6237
[2025-11-26 11:18:06] 2025-11-26 10:16:57,713 | INFO     | sum of deviations: 2640427404510.2354
[2025-11-26 11:18:06] 2025-11-26 10:16:57,713 | INFO     | mean x: 1764111829.5575757
[2025-11-26 11:18:06] 2025-11-26 10:16:57,713 | INFO     | mean y: 2848512.4507575757
[2025-11-26 11:18:06] 2025-11-26 10:16:57,713 | INFO     | intersect: -6528472462.200304
[2025-11-26 11:18:06] 2025-11-26 10:16:57,715 | INFO     | chi2: 18.452487929611056
[2025-11-26 11:18:06] 2025-11-26 10:16:57,715 | INFO     | current chi2=18.452487929611056 (change=21.510342030084825 %)
[2025-11-26 11:18:06] 2025-11-26 10:16:57,715 | INFO     | left removable region: 10
[2025-11-26 11:18:06] 2025-11-26 10:16:57,717 | INFO     | sum of square deviations: 695498976133.2174
[2025-11-26 11:18:06] 2025-11-26 10:16:57,779 | INFO     | sum of deviations: 2693949491291.5117
[2025-11-26 11:18:06] 2025-11-26 10:16:57,779 | INFO     | mean x: 1764111799.066463
[2025-11-26 11:18:06] 2025-11-26 10:16:57,780 | INFO     | mean y: 2868433.6608097786
[2025-11-26 11:18:06] 2025-11-26 10:16:57,780 | INFO     | intersect: -6830251738.706145
[2025-11-26 11:18:06] 2025-11-26 10:16:57,781 | INFO     | chi2: 10.516928571869698
[2025-11-26 11:18:06] 2025-11-26 10:16:57,782 | INFO     | current memory leak: 3.87 B/s (using 1309 data points, chi2=10.52)
[2025-11-26 11:18:06] 2025-11-26 10:16:57,783 | INFO     | could have reported an average CPU frequency of 2250 MHz (45 samples)
[2025-11-26 11:18:06] 2025-11-26 10:16:57,783 | INFO     | ..............................
[2025-11-26 11:18:06] 2025-11-26 10:16:57,783 | INFO     | . Timing measurements:
[2025-11-26 11:18:06] 2025-11-26 10:16:57,783 | INFO     | . get job = 0 s
[2025-11-26 11:18:06] 2025-11-26 10:16:57,783 | INFO     | . initial setup = 9 s
[2025-11-26 11:18:06] 2025-11-26 10:16:57,783 | INFO     | . payload setup = 96 s
[2025-11-26 11:18:06] 2025-11-26 10:16:57,783 | INFO     | . stage-in = 0 s
[2025-11-26 11:18:06] 2025-11-26 10:16:57,783 | INFO     | . payload execution = 80931 s
[2025-11-26 11:18:06] 2025-11-26 10:16:57,783 | INFO     | . stage-out = 5 s
[2025-11-26 11:18:06] 2025-11-26 10:16:57,783 | INFO     | . log creation = 2 s
[2025-11-26 11:18:06] 2025-11-26 10:16:57,783 | INFO     | ..............................
[2025-11-26 11:18:06] 2025-11-26 10:16:57,895 | INFO     | 
[2025-11-26 11:18:06] 2025-11-26 10:16:57,895 | INFO     | job summary report
[2025-11-26 11:18:06] 2025-11-26 10:16:57,895 | INFO     | --------------------------------------------------
[2025-11-26 11:18:06] 2025-11-26 10:16:57,895 | INFO     | PanDA job id: 6895332009
[2025-11-26 11:18:06] 2025-11-26 10:16:57,895 | INFO     | task id: 47556137
[2025-11-26 11:18:06] 2025-11-26 10:16:57,895 | INFO     | errors: (none)
[2025-11-26 11:18:06] 2025-11-26 10:16:57,896 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 11:18:06] 2025-11-26 10:16:57,896 | INFO     | pilot state: finished 
[2025-11-26 11:18:06] 2025-11-26 10:16:57,896 | INFO     | transexitcode: 0
[2025-11-26 11:18:06] 2025-11-26 10:16:57,896 | INFO     | exeerrorcode: 0
[2025-11-26 11:18:06] 2025-11-26 10:16:57,896 | INFO     | exeerrordiag: 
[2025-11-26 11:18:06] 2025-11-26 10:16:57,896 | INFO     | exitcode: 0
[2025-11-26 11:18:06] 2025-11-26 10:16:57,896 | INFO     | exitmsg: OK
[2025-11-26 11:18:06] 2025-11-26 10:16:57,896 | INFO     | cpuconsumptiontime: 303872 s
[2025-11-26 11:18:06] 2025-11-26 10:16:57,896 | INFO     | nevents: 1000
[2025-11-26 11:18:06] 2025-11-26 10:16:57,896 | INFO     | neventsw: 0
[2025-11-26 11:18:06] 2025-11-26 10:16:57,897 | INFO     | pid: 6372
[2025-11-26 11:18:06] 2025-11-26 10:16:57,897 | INFO     | pgrp: 6372
[2025-11-26 11:18:06] 2025-11-26 10:16:57,897 | INFO     | corecount: 8
[2025-11-26 11:18:06] 2025-11-26 10:16:57,897 | INFO     | event service: False
[2025-11-26 11:18:06] 2025-11-26 10:16:57,897 | INFO     | sizes: {0: 2284038, 1: 2284293, 2: 2284293, 12: 2284321, 23: 2284349, 34: 2284377, 45: 2284533, 55: 2284561, 66: 2284589, 77: 2284617, 88: 2284673, 95: 2285243, 98
[2025-11-26 11:18:06] 2025-11-26 10:16:57,897 | INFO     | --------------------------------------------------
[2025-11-26 11:18:06] 2025-11-26 10:16:57,897 | INFO     | 
[2025-11-26 11:18:06] 2025-11-26 10:16:57,897 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-11-26 11:18:06] 2025-11-26 10:16:58,510 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 11:18:06] 2025-11-26 10:16:58,510 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 11:18:06] 2025-11-26 10:16:58,511 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 11:18:06] 2025-11-26 10:16:58,511 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 11:18:06] 2025-11-26 10:16:58,511 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 11:18:06] 2025-11-26 10:16:58,511 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 11:18:06] 2025-11-26 10:16:58,511 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 11:18:06] 2025-11-26 10:16:58,511 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 11:18:06] 2025-11-26 10:16:58,511 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 11:18:06] 2025-11-26 10:16:58,511 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 11:18:06] 2025-11-26 10:16:58,511 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 11:18:06] 2025-11-26 10:16:58,511 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 11:18:06] 2025-11-26 10:16:58,511 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 11:18:06] 2025-11-26 10:16:58,511 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 11:18:06] 2025-11-26 10:16:58,512 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 11:18:06] 2025-11-26 10:16:58,512 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 11:18:06] 2025-11-26 10:16:58,512 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 11:18:06] 2025-11-26 10:16:58,512 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 11:18:06] 2025-11-26 10:16:58,512 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 11:18:06] 2025-11-26 10:16:58,512 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 11:18:06] 2025-11-26 10:16:58,512 | INFO     | job 6895332009 has completed (purged errors)
[2025-11-26 11:18:06] 2025-11-26 10:16:58,512 | INFO     | overall cleanup function is called
[2025-11-26 11:18:06] 2025-11-26 10:16:59,528 | INFO     | --- collectZombieJob: --- 10, [6372]
[2025-11-26 11:18:06] 2025-11-26 10:16:59,528 | INFO     | zombie collector waiting for pid 6372
[2025-11-26 11:18:06] 2025-11-26 10:16:59,528 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 11:18:06] 2025-11-26 10:16:59,528 | INFO     | collected zombie processes
[2025-11-26 11:18:06] 2025-11-26 10:16:59,528 | INFO     | will attempt to kill all subprocesses of pid=6372
[2025-11-26 11:18:06] 2025-11-26 10:16:59,638 | INFO     | process IDs to be killed: [6372] (in reverse order)
[2025-11-26 11:18:06] 2025-11-26 10:17:00,326 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 11:18:06] 2025-11-26 10:17:00,327 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 11:18:06] 2025-11-26 10:17:00,329 | INFO     | did not find any defunct processes belonging to 6372
[2025-11-26 11:18:06] 2025-11-26 10:17:00,332 | INFO     | did not find any defunct processes belonging to 6372
[2025-11-26 11:18:06] 2025-11-26 10:17:00,357 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 11:18:06] 2025-11-26 10:17:00,357 | INFO     | ready for new job
[2025-11-26 11:18:06] 2025-11-26 10:17:00,357 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 11:18:06] 2025-11-26 10:17:00,362 | INFO     | ***************************************
[2025-11-26 11:18:06] 2025-11-26 10:17:00,362 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 11:18:06] 2025-11-26 10:17:00,362 | INFO     | ***************************************
[2025-11-26 11:18:06] 2025-11-26 10:17:00,362 | INFO     | 
[2025-11-26 11:18:06] 2025-11-26 10:17:00,363 | INFO     | pilot is running in a VM
[2025-11-26 11:18:06] 2025-11-26 10:17:00,363 | INFO     | architecture information:
[2025-11-26 11:18:06] 2025-11-26 10:17:00,373 | INFO     | executing command: cat /etc/os-release
[2025-11-26 11:18:06] 2025-11-26 10:17:00,550 | INFO     | cat /etc/os-release:
[2025-11-26 11:18:06] NAME="CentOS Linux"
[2025-11-26 11:18:06] VERSION="7 (Core)"
[2025-11-26 11:18:06] ID="centos"
[2025-11-26 11:18:06] ID_LIKE="rhel fedora"
[2025-11-26 11:18:06] VERSION_ID="7"
[2025-11-26 11:18:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 11:18:06] ANSI_COLOR="0;31"
[2025-11-26 11:18:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 11:18:06] HOME_URL="https://www.centos.org/"
[2025-11-26 11:18:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 11:18:06] 
[2025-11-26 11:18:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 11:18:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 11:18:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 11:18:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 11:18:06] 
[2025-11-26 11:18:06] 2025-11-26 10:17:00,551 | INFO     | ***************************************
[2025-11-26 11:18:06] 2025-11-26 10:17:01,054 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-11-26 11:18:06] 2025-11-26 10:17:01,184 | INFO     | sufficient remaining disk space (495681798144 B)
[2025-11-26 11:18:06] 2025-11-26 10:17:01,184 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 11:18:06] 2025-11-26 10:17:01,184 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 11:18:06] 2025-11-26 10:17:01,184 | INFO     | update_server=False
[2025-11-26 11:18:06] 2025-11-26 10:17:01,184 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 11:18:06] 2025-11-26 10:17:01,423 | INFO     | all data control threads have been joined
[2025-11-26 11:18:06] 2025-11-26 10:17:01,641 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:18:06] 2025-11-26 10:17:01,641 | INFO     | aborting loop
[2025-11-26 11:18:06] 2025-11-26 10:17:01,681 | INFO     | all payload control threads have been joined
[2025-11-26 11:18:06] 2025-11-26 10:17:01,917 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 11:18:06] 2025-11-26 10:17:02,190 | INFO     | [job] retrieve thread has finished
[2025-11-26 11:18:06] 2025-11-26 10:17:02,322 | INFO     | [data] copytool_in thread has finished
[2025-11-26 11:18:06] 2025-11-26 10:17:02,389 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 11:18:06] 2025-11-26 10:17:02,409 | INFO     | all job control threads have been joined
[2025-11-26 11:18:06] 2025-11-26 10:17:02,429 | INFO     | [data] control thread has finished
[2025-11-26 11:18:06] 2025-11-26 10:17:02,641 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 11:18:06] 2025-11-26 10:17:02,647 | INFO     | [job] job monitor thread has finished
[2025-11-26 11:18:06] 2025-11-26 10:17:02,687 | INFO     | [payload] control thread has finished
[2025-11-26 11:18:06] 2025-11-26 10:17:02,804 | INFO     | [payload] validate_post thread has finished
[2025-11-26 11:18:06] 2025-11-26 10:17:02,830 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 11:18:06] 2025-11-26 10:17:02,909 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:18:06] 2025-11-26 10:17:03,362 | INFO     | [payload] failed_post thread has finished
[2025-11-26 11:18:06] 2025-11-26 10:17:03,415 | INFO     | [job] control thread has finished
[2025-11-26 11:18:06] 2025-11-26 10:17:03,433 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 11:18:06] 2025-11-26 10:17:03,450 | INFO     | [job] validate thread has finished
[2025-11-26 11:18:06] 2025-11-26 10:17:03,504 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 11:18:06] 2025-11-26 10:17:03,915 | INFO     | [job] queue monitor thread has finished
[2025-11-26 11:18:06] 2025-11-26 10:17:03,924 | INFO     | [data] copytool_out thread has finished
[2025-11-26 11:18:06] 2025-11-26 10:17:07,442 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 11:18:06] 2025-11-26 10:17:29,817 | INFO     | PID=31813 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 11:18:06] 2025-11-26 10:17:29,817 | INFO     | .. there are 9 such processes running
[2025-11-26 11:18:06] 2025-11-26 10:17:29,817 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 11:18:06] 2025-11-26 10:17:29,818 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 11:18:06] 2025-11-26 10:17:29,818 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 11:18:06] 2025-11-26 10:17:56,099 | INFO     | [monitor] cgroup control has ended
[2025-11-26 11:18:06] 2025-11-26 10:17:57,036 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140353007449920)>', '<ExcThread(monitor, started 140352702879488)>']
[2025-11-26 11:18:06] 2025-11-26 10:17:57,985 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 11:18:06] 2025-11-26 10:17:57,985 | INFO     | [monitor] control thread has ended
[2025-11-26 11:18:06] 2025-11-26 10:18:02,062 | INFO     | all workflow threads have been joined
[2025-11-26 11:18:06] 2025-11-26 10:18:02,062 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 11:18:06] 2025-11-26 10:18:02,062 | INFO     | traces error code: 0
[2025-11-26 11:18:06] 2025-11-26 10:18:02,062 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 11:18:06] 2025-11-26 10:18:02,369 [wrapper] ==== pilot stdout END ====
[2025-11-26 11:18:06] 2025-11-26 10:18:02,478 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 11:18:06] 2025-11-26 10:18:02,553 [wrapper] pilotpid: 31813
[2025-11-26 11:18:06] 2025-11-26 10:18:02,636 [wrapper] Pilot exit status: 0
[2025-11-26 11:18:06] 2025-11-26 10:18:03,044 [wrapper] pandaids: 6895332009
[2025-11-26 11:18:06] 2025-11-26 10:18:04,399 [wrapper] cleanup supervisor_pilot 31657 31814
[2025-11-26 11:18:06] 2025-11-26 10:18:04,503 [wrapper] Test setup, not cleaning
[2025-11-26 11:18:06] 2025-11-26 10:18:04,557 [wrapper] apfmon messages muted
[2025-11-26 11:18:06] 2025-11-26 10:18:04,625 [wrapper] ==== wrapper stdout END ====
[2025-11-26 11:18:06] 2025-11-26 10:18:04,722 [wrapper] ==== wrapper stderr END ====
[2025-11-26 11:18:06]  *** Error codes and diagnostics ***
[2025-11-26 11:18:06]     "exeErrorCode": 0,
[2025-11-26 11:18:06]     "exeErrorDiag": "",
[2025-11-26 11:18:06]     "pilotErrorCode": 0,
[2025-11-26 11:18:06]     "pilotErrorDiag": "",
[2025-11-26 11:18:06]  *** Listing of results directory ***
[2025-11-26 11:18:06] total 1318828
[2025-11-26 11:18:06] -rw-r--r--. 1 boinc boinc    576529 Nov 22 00:51 pilot3.tar.gz
[2025-11-26 11:18:06] -rw-r--r--. 1 boinc boinc      5112 Nov 22 01:09 queuedata.json
[2025-11-26 11:18:06] -rwx------. 1 boinc boinc     36292 Nov 22 01:13 runpilot2-wrapper.sh
[2025-11-26 11:18:06] -rw-r--r--. 1 boinc boinc       100 Nov 25 12:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 11:18:06] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 12:38 run_atlas
[2025-11-26 11:18:06] -rw-r--r--. 1 boinc boinc       105 Nov 25 12:38 job.xml
[2025-11-26 11:18:06] -rw-r--r--. 2 boinc boinc 411532723 Nov 25 12:38 EVNT.47483658._000187.pool.root.1
[2025-11-26 11:18:06] -rw-r--r--. 1 boinc boinc      6393 Nov 25 12:38 init_data.xml
[2025-11-26 11:18:06] -rw-r--r--. 2 boinc boinc     15847 Nov 25 12:38 start_atlas.sh
[2025-11-26 11:18:06] drwxrwx--x. 2 boinc boinc        68 Nov 25 12:38 shared
[2025-11-26 11:18:06] -rw-r--r--. 2 boinc boinc    590104 Nov 25 12:38 input.tar.gz
[2025-11-26 11:18:06] -rw-r--r--. 1 boinc boinc         0 Nov 25 12:38 boinc_lockfile
[2025-11-26 11:18:06] -rw-r--r--. 1 boinc boinc      2785 Nov 25 12:38 pandaJob.out
[2025-11-26 11:18:06] -rw-------. 1 boinc boinc    991894 Nov 25 12:41 agis_schedconf.cvmfs.json
[2025-11-26 11:18:06] drwx------. 5 boinc boinc      4096 Nov 25 12:41 pilot3
[2025-11-26 11:18:06] -rw-r--r--. 1 boinc boinc       533 Nov 26 10:56 boinc_task_state.xml
[2025-11-26 11:18:06] -rw-------. 1 boinc boinc 908437883 Nov 26 11:14 HITS.47556137._001863.pool.root.1
[2025-11-26 11:18:06] -rw-------. 1 boinc boinc      1031 Nov 26 11:15 memory_monitor_summary.json
[2025-11-26 11:18:06] -rw-------. 1 boinc boinc   1516240 Nov 26 11:15 agis_ddmendpoints.agis.ALL.json
[2025-11-26 11:18:06] -rw-------. 1 boinc boinc   2438478 Nov 26 11:15 log.47556137._001863.job.log.tgz.1
[2025-11-26 11:18:06] -rw-------. 1 boinc boinc        95 Nov 26 11:16 pilot_heartbeat.json
[2025-11-26 11:18:06] -rw-------. 1 boinc boinc      8623 Nov 26 11:16 heartbeat.json
[2025-11-26 11:18:06] -rw-r--r--. 1 boinc boinc      8192 Nov 26 11:17 boinc_mmap_file
[2025-11-26 11:18:06] -rw-r--r--. 1 boinc boinc        29 Nov 26 11:17 wrapper_checkpoint.txt
[2025-11-26 11:18:06] -rw-------. 1 boinc boinc      4885 Nov 26 11:18 pilotlog.txt
[2025-11-26 11:18:06] -rw-------. 1 boinc boinc  10866667 Nov 26 11:18 log.47556137._001863.job.log.1
[2025-11-26 11:18:06] -rw-------. 1 boinc boinc       353 Nov 26 11:18 output.list
[2025-11-26 11:18:06] -rw-r--r--. 1 boinc boinc       620 Nov 26 11:18 runtime_log
[2025-11-26 11:18:06] -rw-------. 1 boinc boinc  13322240 Nov 26 11:18 result.tar.gz
[2025-11-26 11:18:06] -rw-r--r--. 1 boinc boinc      8833 Nov 26 11:18 runtime_log.err
[2025-11-26 11:18:06] -rw-------. 1 boinc boinc       662 Nov 26 11:18 ofAMDmdQqg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmnoJKDm0yONem.diag
[2025-11-26 11:18:06] -rw-r--r--. 1 boinc boinc     21436 Nov 26 11:18 stderr.txt
[2025-11-26 11:18:07] HITS file was successfully produced:
[2025-11-26 11:18:07] -rw-------. 1 boinc boinc 908437883 Nov 26 11:14 shared/HITS.pool.root.1
[2025-11-26 11:18:07]  *** Contents of shared directory: ***
[2025-11-26 11:18:07] total 1302644
[2025-11-26 11:18:07] -rw-r--r--. 2 boinc boinc 411532723 Nov 25 12:38 ATLAS.root_0
[2025-11-26 11:18:07] -rw-r--r--. 2 boinc boinc     15847 Nov 25 12:38 start_atlas.sh
[2025-11-26 11:18:07] -rw-r--r--. 2 boinc boinc    590104 Nov 25 12:38 input.tar.gz
[2025-11-26 11:18:07] -rw-------. 1 boinc boinc 908437883 Nov 26 11:14 HITS.pool.root.1
[2025-11-26 11:18:07] -rw-------. 1 boinc boinc  13322240 Nov 26 11:18 result.tar.gz
11:18:08 (28081): run_atlas exited; CPU time 304400.166404
11:18:08 (28081): called boinc_finish(0)

</stderr_txt>
]]>

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