Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:18:29 (1688891): wrapper (7.7.26015): starting
23:18:29 (1688891): wrapper: running run_atlas (--nthreads 3)
[2025-11-22 23:18:29] Arguments: --nthreads 3
[2025-11-22 23:18:29] Threads: 3
[2025-11-22 23:18:29] Checking for CVMFS
[2025-11-22 23:18:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 23:18:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 23:18:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 23:18:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 23:18:30] 2.9.2.0 1027257 587 68604 153187 2 11 34747834 36864001 0 130560 0 1942818 99.998 23784 17950 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-22 23:18:30] CVMFS is ok
[2025-11-22 23:18:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 23:18:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 23:18:30] Further information can be found at the LHC@home message board.
[2025-11-22 23:18:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 23:18:30] Checking for apptainer binary...
[2025-11-22 23:18:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 23:18:30] Running /usr/bin/apptainer --version
[2025-11-22 23:18:30] apptainer version 1.4.1-1.1
[2025-11-22 23:18:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 23:18:30] thA335
[2025-11-22 23:18:30] apptainer works
[2025-11-22 23:18:30] Set ATHENA_PROC_NUMBER=3
[2025-11-22 23:18:30] Set ATHENA_CORE_NUMBER=3
[2025-11-22 23:18:30] Starting ATLAS job with PandaID=6895332014
[2025-11-22 23:18:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 23:22:47]  *** The last 200 lines of the pilot log: ***
[2025-11-22 23:22:47] 2025-11-22 22:21:56,090 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 23:22:47] 2025-11-22 22:21:56,090 | INFO     | update_server=False
[2025-11-22 23:22:47] 2025-11-22 22:21:56,090 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 23:22:47] 2025-11-22 22:21:56,090 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:22:47] 2025-11-22 22:21:56,552 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 23:22:47] 2025-11-22 22:21:56,553 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 23:22:47] 2025-11-22 22:21:56,553 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:22:47] 2025-11-22 22:21:56,553 | INFO     | will abort loop
[2025-11-22 23:22:47] 2025-11-22 22:21:56,685 | INFO     | all data control threads have been joined
[2025-11-22 23:22:47] 2025-11-22 22:21:56,717 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 23:22:47] 2025-11-22 22:21:57,010 | INFO     | all payload control threads have been joined
[2025-11-22 23:22:47] 2025-11-22 22:21:57,096 | INFO     | [job] retrieve thread has finished
[2025-11-22 23:22:47] 2025-11-22 22:21:57,097 | INFO     | [job] queue monitor thread has finished
[2025-11-22 23:22:47] 2025-11-22 22:21:57,556 | INFO     | all job control threads have been joined
[2025-11-22 23:22:47] 2025-11-22 22:21:57,559 | INFO     | [job] job monitor thread has finished
[2025-11-22 23:22:47] 2025-11-22 22:21:57,574 | INFO     | [payload] validate_post thread has finished
[2025-11-22 23:22:47] 2025-11-22 22:21:57,691 | INFO     | [data] control thread has finished
[2025-11-22 23:22:47] 2025-11-22 22:21:57,805 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 23:22:47] 2025-11-22 22:21:57,967 | INFO     | [job] validate thread has finished
[2025-11-22 23:22:47] 2025-11-22 22:21:58,016 | INFO     | [payload] control thread has finished
[2025-11-22 23:22:47] 2025-11-22 22:21:58,043 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 23:22:47] 2025-11-22 22:21:58,116 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 23:22:47] 2025-11-22 22:21:58,135 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 23:22:47] 2025-11-22 22:21:58,186 | INFO     | [data] copytool_in thread has finished
[2025-11-22 23:22:47] 2025-11-22 22:21:58,562 | INFO     | [job] control thread has finished
[2025-11-22 23:22:47] 2025-11-22 22:21:58,609 | INFO     | [payload] failed_post thread has finished
[2025-11-22 23:22:47] 2025-11-22 22:21:58,688 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 23:22:47] 2025-11-22 22:21:58,721 | INFO     | [data] copytool_out thread has finished
[2025-11-22 23:22:47] 2025-11-22 22:22:02,696 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 23:22:47] 2025-11-22 22:22:26,101 | INFO     | PID=1692616 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 23:22:47] 2025-11-22 22:22:26,102 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 23:22:47] 2025-11-22 22:22:26,102 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 23:22:47] 2025-11-22 22:22:26,102 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 23:22:47] 2025-11-22 22:22:41,135 | INFO     | [monitor] cgroup control has ended
[2025-11-22 23:22:47] 2025-11-22 22:22:42,519 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140055851935552)>', '<ExcThread(monitor, started 140054848595712)>']
[2025-11-22 23:22:47] 2025-11-22 22:22:43,192 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 23:22:47] 2025-11-22 22:22:43,192 | INFO     | [monitor] control thread has ended
[2025-11-22 23:22:47] 2025-11-22 22:22:47,544 | INFO     | all workflow threads have been joined
[2025-11-22 23:22:47] 2025-11-22 22:22:47,545 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 23:22:47] 2025-11-22 22:22:47,545 | INFO     | traces error code: 0
[2025-11-22 23:22:47] 2025-11-22 22:22:47,546 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 23:22:47] 2025-11-22 22:22:47,592 [wrapper] ==== pilot stdout END ====
[2025-11-22 23:22:47] 2025-11-22 22:22:47,595 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 23:22:47] 2025-11-22 22:22:47,597 [wrapper] pilotpid: 1692616
[2025-11-22 23:22:47] 2025-11-22 22:22:47,600 [wrapper] Pilot exit status: 0
[2025-11-22 23:22:47] 2025-11-22 22:22:47,607 [wrapper] pandaids: 6895332014
[2025-11-22 23:22:47] 2025-11-22 22:22:47,623 [wrapper] cleanup supervisor_pilot 1692622 1692617
[2025-11-22 23:22:47] 2025-11-22 22:22:47,626 [wrapper] Test setup, not cleaning
[2025-11-22 23:22:47] 2025-11-22 22:22:47,629 [wrapper] apfmon messages muted
[2025-11-22 23:22:47] 2025-11-22 22:22:47,631 [wrapper] ==== wrapper stdout END ====
[2025-11-22 23:22:47] 2025-11-22 22:22:47,634 [wrapper] ==== wrapper stderr END ====
[2025-11-22 23:22:47]  *** Error codes and diagnostics ***
[2025-11-22 23:22:47]     "exeErrorCode": 65,
[2025-11-22 23:22:47]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-22 23:22:47]     "pilotErrorCode": 1305,
[2025-11-22 23:22:47]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-22 23:22:47]  *** Listing of results directory ***
[2025-11-22 23:22:47] total 405980
[2025-11-22 23:22:47] -rw-r--r-- 1 boinc boinc    576529 Nov 22 00:51 pilot3.tar.gz
[2025-11-22 23:22:47] -rw-r--r-- 1 boinc boinc      5112 Nov 22 01:14 queuedata.json
[2025-11-22 23:22:47] -rwx------ 1 boinc boinc     36292 Nov 22 01:16 runpilot2-wrapper.sh
[2025-11-22 23:22:47] -rw-r--r-- 1 boinc boinc       100 Nov 22 23:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 23:22:47] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 23:18 run_atlas
[2025-11-22 23:22:47] -rw-r--r-- 1 boinc boinc       105 Nov 22 23:18 job.xml
[2025-11-22 23:22:47] -rw-r--r-- 2 boinc boinc 411532723 Nov 22 23:18 EVNT.47483658._000187.pool.root.1
[2025-11-22 23:22:47] -rw-r--r-- 2 boinc boinc    590104 Nov 22 23:18 input.tar.gz
[2025-11-22 23:22:47] -rw-r--r-- 2 boinc boinc     15847 Nov 22 23:18 start_atlas.sh
[2025-11-22 23:22:47] drwxrwx--x 2 boinc boinc      4096 Nov 22 23:18 shared
[2025-11-22 23:22:47] -rw-r--r-- 1 boinc boinc         0 Nov 22 23:18 boinc_setup_complete
[2025-11-22 23:22:47] -rw-r--r-- 1 boinc boinc      6194 Nov 22 23:18 init_data.xml
[2025-11-22 23:22:47] -rw-r--r-- 1 boinc boinc         0 Nov 22 23:18 boinc_lockfile
[2025-11-22 23:22:47] -rw-r--r-- 1 boinc boinc      2786 Nov 22 23:18 pandaJob.out
[2025-11-22 23:22:47] -rw------- 1 boinc boinc    989784 Nov 22 23:18 agis_schedconf.cvmfs.json
[2025-11-22 23:22:47] -rw------- 1 boinc boinc   1526164 Nov 22 23:18 agis_ddmendpoints.agis.ALL.json
[2025-11-22 23:22:47] drwx------ 5 boinc boinc      4096 Nov 22 23:18 pilot3
[2025-11-22 23:22:47] -rw-r--r-- 1 boinc boinc       522 Nov 22 23:19 boinc_task_state.xml
[2025-11-22 23:22:47] -rw------- 1 boinc boinc       955 Nov 22 23:19 memory_monitor_summary.json
[2025-11-22 23:22:47] -rw------- 1 boinc boinc     54227 Nov 22 23:19 log.47556137._001868.job.log.tgz.1
[2025-11-22 23:22:47] -rw------- 1 boinc boinc        95 Nov 22 23:21 pilot_heartbeat.json
[2025-11-22 23:22:47] -rw------- 1 boinc boinc      8402 Nov 22 23:21 heartbeat.json
[2025-11-22 23:22:47] -rw-r--r-- 1 boinc boinc      8192 Nov 22 23:22 boinc_mmap_file
[2025-11-22 23:22:47] -rw-r--r-- 1 boinc boinc        22 Nov 22 23:22 wrapper_checkpoint.txt
[2025-11-22 23:22:47] -rw------- 1 boinc boinc      4938 Nov 22 23:22 pilotlog.txt
[2025-11-22 23:22:47] -rw------- 1 boinc boinc     93628 Nov 22 23:22 log.47556137._001868.job.log.1
[2025-11-22 23:22:47] -rw------- 1 boinc boinc       186 Nov 22 23:22 output.list
[2025-11-22 23:22:47] -rw-r--r-- 1 boinc boinc       620 Nov 22 23:22 runtime_log
[2025-11-22 23:22:47] -rw------- 1 boinc boinc    163840 Nov 22 23:22 result.tar.gz
[2025-11-22 23:22:47] -rw-r--r-- 1 boinc boinc      8744 Nov 22 23:22 runtime_log.err
[2025-11-22 23:22:47] -rw------- 1 boinc boinc       649 Nov 22 23:22 9ZINDmUTqg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAsHKDmZtb74m.diag
[2025-11-22 23:22:47] -rw-r--r-- 1 boinc boinc      8123 Nov 22 23:22 stderr.txt
[2025-11-22 23:22:47] No HITS result produced
[2025-11-22 23:22:47]  *** Contents of shared directory: ***
[2025-11-22 23:22:47] total 402648
[2025-11-22 23:22:47] -rw-r--r-- 2 boinc boinc 411532723 Nov 22 23:18 ATLAS.root_0
[2025-11-22 23:22:47] -rw-r--r-- 2 boinc boinc    590104 Nov 22 23:18 input.tar.gz
[2025-11-22 23:22:47] -rw-r--r-- 2 boinc boinc     15847 Nov 22 23:18 start_atlas.sh
[2025-11-22 23:22:47] -rw------- 1 boinc boinc    163840 Nov 22 23:22 result.tar.gz
23:22:48 (1688891): run_atlas exited; CPU time 31.465139
23:22:48 (1688891): called boinc_finish(0)

</stderr_txt>
]]>

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