Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
18:57:23 (1596698): wrapper (7.7.26015): starting
18:57:23 (1596698): wrapper: running run_atlas (--nthreads 4)
[2025-11-22 18:57:23] Arguments: --nthreads 4
[2025-11-22 18:57:23] Threads: 4
[2025-11-22 18:57:23] Checking for CVMFS
[2025-11-22 18:57:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 18:57:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 18:57:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 18:57:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 18:57:24] 2.13.3.0 7129 8991 51628 153190 3 100 2464672 4096001 2272 130560 3 3444968 99.925 486172 1024 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-22 18:57:24] CVMFS is ok
[2025-11-22 18:57:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 18:57:24] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-22 18:57:24] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-22 18:57:24] Further information can be found at the LHC@home message board.
[2025-11-22 18:57:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 18:57:24] Checking for apptainer binary...
[2025-11-22 18:57:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 18:57:24] Running /usr/bin/apptainer --version
[2025-11-22 18:57:24] apptainer version 1.4.4
[2025-11-22 18:57:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 18:57:24] T7810-Ubuntu
[2025-11-22 18:57:24] apptainer works
[2025-11-22 18:57:24] Set ATHENA_PROC_NUMBER=4
[2025-11-22 18:57:24] Set ATHENA_CORE_NUMBER=4
[2025-11-22 18:57:24] Starting ATLAS job with PandaID=6895324433
[2025-11-22 18:57:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 14:06:37]  *** The last 200 lines of the pilot log: ***
[2025-11-23 14:06:37] 2025-11-23 19:05:31,114 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 14:06:37] 2025-11-23 19:05:32,191 | INFO     | PID=1600732 has CPU usage=15.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-23 14:06:37] 2025-11-23 19:05:32,191 | INFO     | .. there are 3 such processes running
[2025-11-23 14:06:37] 2025-11-23 19:05:32,621 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 14:06:37] 2025-11-23 19:05:32,633 | INFO     | found 40 cores (20 cores per socket, 2 sockets) HT, CPU MHz: 2750.3095625000005
[2025-11-23 14:06:37] 2025-11-23 19:05:32,647 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/13/PanDA_Pilot-6895324433/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 14:06:37] 2025-11-23 19:05:32,648 | INFO     | extracted standard info from prmon json
[2025-11-23 14:06:37] 2025-11-23 19:05:32,648 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 14:06:37] 2025-11-23 19:05:32,648 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 14:06:37] 2025-11-23 19:05:32,667 | INFO     | fitting pss+swap vs Time
[2025-11-23 14:06:37] 2025-11-23 19:05:32,668 | INFO     | sum of square deviations: 446231175980.0
[2025-11-23 14:06:37] 2025-11-23 19:05:32,703 | INFO     | sum of deviations: 1021656119292.0002
[2025-11-23 14:06:37] 2025-11-23 19:05:32,704 | INFO     | mean x: 1763890291.0
[2025-11-23 14:06:37] 2025-11-23 19:05:32,704 | INFO     | mean y: 2262679.321523472
[2025-11-23 14:06:37] 2025-11-23 19:05:32,704 | INFO     | intersect: -4036203045.540036
[2025-11-23 14:06:37] 2025-11-23 19:05:32,705 | INFO     | chi2: 5.3806674999103175
[2025-11-23 14:06:37] 2025-11-23 19:05:32,707 | INFO     | sum of square deviations: 440328721125.0
[2025-11-23 14:06:37] 2025-11-23 19:05:32,739 | INFO     | sum of deviations: 1310736783860.0
[2025-11-23 14:06:37] 2025-11-23 19:05:32,740 | INFO     | mean x: 1763890138.5
[2025-11-23 14:06:37] 2025-11-23 19:05:32,740 | INFO     | mean y: 2270148.3362989323
[2025-11-23 14:06:37] 2025-11-23 19:05:32,740 | INFO     | intersect: -5248342805.806052
[2025-11-23 14:06:37] 2025-11-23 19:05:32,741 | INFO     | chi2: 2.473249966641796
[2025-11-23 14:06:37] 2025-11-23 19:05:32,741 | INFO     | current chi2=2.473249966641796 (change=54.03451399509412 %)
[2025-11-23 14:06:37] 2025-11-23 19:05:32,743 | INFO     | sum of square deviations: 434478546320.0
[2025-11-23 14:06:37] 2025-11-23 19:05:32,773 | INFO     | sum of deviations: 1333444234794.0002
[2025-11-23 14:06:37] 2025-11-23 19:05:32,773 | INFO     | mean x: 1763889986.0
[2025-11-23 14:06:37] 2025-11-23 19:05:32,773 | INFO     | mean y: 2270737.7944593388
[2025-11-23 14:06:37] 2025-11-23 19:05:32,774 | INFO     | intersect: -5411227702.03472
[2025-11-23 14:06:37] 2025-11-23 19:05:32,775 | INFO     | chi2: 2.3729796072652984
[2025-11-23 14:06:37] 2025-11-23 19:05:32,775 | INFO     | current chi2=2.3729796072652984 (change=4.0541943082544805 %)
[2025-11-23 14:06:37] 2025-11-23 19:05:32,775 | INFO     | right removable region: 1118
[2025-11-23 14:06:37] 2025-11-23 19:05:32,777 | INFO     | sum of square deviations: 440328721125.0
[2025-11-23 14:06:37] 2025-11-23 19:05:32,807 | INFO     | sum of deviations: 775253121647.9999
[2025-11-23 14:06:37] 2025-11-23 19:05:32,807 | INFO     | mean x: 1763890443.5
[2025-11-23 14:06:37] 2025-11-23 19:05:32,807 | INFO     | mean y: 2269039.7829181496
[2025-11-23 14:06:37] 2025-11-23 19:05:32,807 | INFO     | intersect: -3103278036.671031
[2025-11-23 14:06:37] 2025-11-23 19:05:32,809 | INFO     | chi2: 3.1743466804190126
[2025-11-23 14:06:37] 2025-11-23 19:05:32,809 | INFO     | current chi2=3.1743466804190126 (change=41.00459319458188 %)
[2025-11-23 14:06:37] 2025-11-23 19:05:32,810 | INFO     | sum of square deviations: 434478546320.0
[2025-11-23 14:06:37] 2025-11-23 19:05:32,840 | INFO     | sum of deviations: 750858551014.0002
[2025-11-23 14:06:37] 2025-11-23 19:05:32,841 | INFO     | mean x: 1763890596.0
[2025-11-23 14:06:37] 2025-11-23 19:05:32,841 | INFO     | mean y: 2269675.340482574
[2025-11-23 14:06:37] 2025-11-23 19:05:32,841 | INFO     | intersect: -3046056526.902693
[2025-11-23 14:06:37] 2025-11-23 19:05:32,842 | INFO     | chi2: 3.16828118364037
[2025-11-23 14:06:37] 2025-11-23 19:05:32,843 | INFO     | current chi2=3.16828118364037 (change=0.1910785868493107 %)
[2025-11-23 14:06:37] 2025-11-23 19:05:32,843 | INFO     | left removable region: 20
[2025-11-23 14:06:37] 2025-11-23 19:05:32,844 | INFO     | sum of square deviations: 410473461814.5
[2025-11-23 14:06:37] 2025-11-23 19:05:32,873 | INFO     | sum of deviations: 1016007063286.5012
[2025-11-23 14:06:37] 2025-11-23 19:05:32,873 | INFO     | mean x: 1763890565.5
[2025-11-23 14:06:37] 2025-11-23 19:05:32,873 | INFO     | mean y: 2279023.470856102
[2025-11-23 14:06:37] 2025-11-23 19:05:32,874 | INFO     | intersect: -4363716443.057777
[2025-11-23 14:06:37] 2025-11-23 19:05:32,875 | INFO     | chi2: 0.1301089753758219
[2025-11-23 14:06:37] 2025-11-23 19:05:32,875 | INFO     | current memory leak: 2.48 B/s (using 1098 data points, chi2=0.13)
[2025-11-23 14:06:37] 2025-11-23 19:05:32,876 | INFO     | could have reported an average CPU frequency of 2730 MHz (41 samples)
[2025-11-23 14:06:37] 2025-11-23 19:05:32,876 | INFO     | ..............................
[2025-11-23 14:06:37] 2025-11-23 19:05:32,877 | INFO     | . Timing measurements:
[2025-11-23 14:06:37] 2025-11-23 19:05:32,877 | INFO     | . get job = 0 s
[2025-11-23 14:06:37] 2025-11-23 19:05:32,877 | INFO     | . initial setup = 4 s
[2025-11-23 14:06:37] 2025-11-23 19:05:32,877 | INFO     | . payload setup = 7 s
[2025-11-23 14:06:37] 2025-11-23 19:05:32,877 | INFO     | . stage-in = 0 s
[2025-11-23 14:06:37] 2025-11-23 19:05:32,877 | INFO     | . payload execution = 68832 s
[2025-11-23 14:06:37] 2025-11-23 19:05:32,877 | INFO     | . stage-out = 4 s
[2025-11-23 14:06:37] 2025-11-23 19:05:32,877 | INFO     | . log creation = 0 s
[2025-11-23 14:06:37] 2025-11-23 19:05:32,877 | INFO     | ..............................
[2025-11-23 14:06:37] 2025-11-23 19:05:33,027 | INFO     | 
[2025-11-23 14:06:37] 2025-11-23 19:05:33,027 | INFO     | job summary report
[2025-11-23 14:06:37] 2025-11-23 19:05:33,028 | INFO     | --------------------------------------------------
[2025-11-23 14:06:37] 2025-11-23 19:05:33,028 | INFO     | PanDA job id: 6895324433
[2025-11-23 14:06:37] 2025-11-23 19:05:33,028 | INFO     | task id: 47556137
[2025-11-23 14:06:37] 2025-11-23 19:05:33,028 | INFO     | errors: (none)
[2025-11-23 14:06:37] 2025-11-23 19:05:33,028 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 14:06:37] 2025-11-23 19:05:33,028 | INFO     | pilot state: finished 
[2025-11-23 14:06:37] 2025-11-23 19:05:33,028 | INFO     | transexitcode: 0
[2025-11-23 14:06:37] 2025-11-23 19:05:33,028 | INFO     | exeerrorcode: 0
[2025-11-23 14:06:37] 2025-11-23 19:05:33,028 | INFO     | exeerrordiag: 
[2025-11-23 14:06:37] 2025-11-23 19:05:33,028 | INFO     | exitcode: 0
[2025-11-23 14:06:37] 2025-11-23 19:05:33,028 | INFO     | exitmsg: OK
[2025-11-23 14:06:37] 2025-11-23 19:05:33,029 | INFO     | cpuconsumptiontime: 274722 s
[2025-11-23 14:06:37] 2025-11-23 19:05:33,029 | INFO     | nevents: 1000
[2025-11-23 14:06:37] 2025-11-23 19:05:33,029 | INFO     | neventsw: 0
[2025-11-23 14:06:37] 2025-11-23 19:05:33,029 | INFO     | pid: 1607711
[2025-11-23 14:06:37] 2025-11-23 19:05:33,029 | INFO     | pgrp: 1607711
[2025-11-23 14:06:37] 2025-11-23 19:05:33,029 | INFO     | corecount: 4
[2025-11-23 14:06:37] 2025-11-23 19:05:33,029 | INFO     | event service: False
[2025-11-23 14:06:37] 2025-11-23 19:05:33,029 | INFO     | sizes: {0: 2298646, 1: 2298845, 5: 2299107, 11: 2299163, 68843: 2355436, 68847: 2364460, 68848: 2364644, 68858: 2364986}
[2025-11-23 14:06:37] 2025-11-23 19:05:33,029 | INFO     | --------------------------------------------------
[2025-11-23 14:06:37] 2025-11-23 19:05:33,029 | INFO     | 
[2025-11-23 14:06:37] 2025-11-23 19:05:33,029 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/13
[2025-11-23 14:06:37] 2025-11-23 19:05:33,056 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 14:06:37] 2025-11-23 19:05:33,056 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 14:06:37] 2025-11-23 19:05:33,056 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 14:06:37] 2025-11-23 19:05:33,056 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 14:06:37] 2025-11-23 19:05:33,056 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 14:06:37] 2025-11-23 19:05:33,056 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 14:06:37] 2025-11-23 19:05:33,056 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 14:06:37] 2025-11-23 19:05:33,057 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 14:06:37] 2025-11-23 19:05:33,057 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 14:06:37] 2025-11-23 19:05:33,057 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 14:06:37] 2025-11-23 19:05:33,057 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 14:06:37] 2025-11-23 19:05:33,057 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 14:06:37] 2025-11-23 19:05:33,057 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 14:06:37] 2025-11-23 19:05:33,057 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 14:06:37] 2025-11-23 19:05:33,057 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 14:06:37] 2025-11-23 19:05:33,057 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 14:06:37] 2025-11-23 19:05:33,057 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 14:06:37] 2025-11-23 19:05:33,057 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 14:06:37] 2025-11-23 19:05:33,057 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 14:06:37] 2025-11-23 19:05:33,057 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 14:06:37] 2025-11-23 19:05:33,057 | INFO     | job 6895324433 has completed (purged errors)
[2025-11-23 14:06:37] 2025-11-23 19:05:33,058 | INFO     | overall cleanup function is called
[2025-11-23 14:06:37] 2025-11-23 19:05:34,071 | INFO     | --- collectZombieJob: --- 10, [1607711]
[2025-11-23 14:06:37] 2025-11-23 19:05:34,072 | INFO     | zombie collector waiting for pid 1607711
[2025-11-23 14:06:37] 2025-11-23 19:05:34,072 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 14:06:37] 2025-11-23 19:05:34,072 | INFO     | collected zombie processes
[2025-11-23 14:06:37] 2025-11-23 19:05:34,072 | INFO     | will attempt to kill all subprocesses of pid=1607711
[2025-11-23 14:06:37] 2025-11-23 19:05:34,378 | INFO     | process IDs to be killed: [1607711] (in reverse order)
[2025-11-23 14:06:37] 2025-11-23 19:05:34,447 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 14:06:37] 2025-11-23 19:05:34,447 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 14:06:37] 2025-11-23 19:05:34,456 | INFO     | did not find any defunct processes belonging to 1607711
[2025-11-23 14:06:37] 2025-11-23 19:05:34,464 | INFO     | did not find any defunct processes belonging to 1607711
[2025-11-23 14:06:37] 2025-11-23 19:05:34,466 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 14:06:37] 2025-11-23 19:05:34,466 | INFO     | ready for new job
[2025-11-23 14:06:37] 2025-11-23 19:05:34,466 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 14:06:37] 2025-11-23 19:05:34,472 | INFO     | ***************************************
[2025-11-23 14:06:37] 2025-11-23 19:05:34,472 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 14:06:37] 2025-11-23 19:05:34,472 | INFO     | ***************************************
[2025-11-23 14:06:37] 2025-11-23 19:05:34,473 | INFO     | 
[2025-11-23 14:06:37] 2025-11-23 19:05:34,477 | INFO     | architecture information:
[2025-11-23 14:06:37] 2025-11-23 19:05:34,477 | INFO     | executing command: cat /etc/os-release
[2025-11-23 14:06:37] 2025-11-23 19:05:34,497 | INFO     | cat /etc/os-release:
[2025-11-23 14:06:37] NAME="CentOS Linux"
[2025-11-23 14:06:37] VERSION="7 (Core)"
[2025-11-23 14:06:37] ID="centos"
[2025-11-23 14:06:37] ID_LIKE="rhel fedora"
[2025-11-23 14:06:37] VERSION_ID="7"
[2025-11-23 14:06:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 14:06:37] ANSI_COLOR="0;31"
[2025-11-23 14:06:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 14:06:37] HOME_URL="https://www.centos.org/"
[2025-11-23 14:06:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 14:06:37] 
[2025-11-23 14:06:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 14:06:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 14:06:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 14:06:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 14:06:37] 
[2025-11-23 14:06:37] 2025-11-23 19:05:34,498 | INFO     | ***************************************
[2025-11-23 14:06:37] 2025-11-23 19:05:35,000 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/13
[2025-11-23 14:06:37] 2025-11-23 19:05:35,019 | INFO     | sufficient remaining disk space (287433555968 B)
[2025-11-23 14:06:37] 2025-11-23 19:05:35,019 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 14:06:37] 2025-11-23 19:05:35,019 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 14:06:37] 2025-11-23 19:05:35,019 | INFO     | update_server=False
[2025-11-23 14:06:37] 2025-11-23 19:05:35,019 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 14:06:37] 2025-11-23 19:05:35,020 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 14:06:37] 2025-11-23 19:05:35,021 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 14:06:37] 2025-11-23 19:05:35,021 | INFO     | aborting loop
[2025-11-23 14:06:37] 2025-11-23 19:05:35,266 | INFO     | all job control threads have been joined
[2025-11-23 14:06:37] 2025-11-23 19:05:35,529 | INFO     | all payload control threads have been joined
[2025-11-23 14:06:37] 2025-11-23 19:05:35,578 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 14:06:37] 2025-11-23 19:05:35,649 | INFO     | all data control threads have been joined
[2025-11-23 14:06:37] 2025-11-23 19:05:36,025 | INFO     | [job] retrieve thread has finished
[2025-11-23 14:06:37] 2025-11-23 19:05:36,025 | INFO     | [job] job monitor thread has finished
[2025-11-23 14:06:37] 2025-11-23 19:05:36,027 | INFO     | [data] copytool_in thread has finished
[2025-11-23 14:06:37] 2025-11-23 19:05:36,270 | INFO     | [job] control thread has finished
[2025-11-23 14:06:37] 2025-11-23 19:05:36,358 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 14:06:37] 2025-11-23 19:05:36,358 | INFO     | [job] validate thread has finished
[2025-11-23 14:06:37] 2025-11-23 19:05:36,387 | INFO     | [payload] validate_post thread has finished
[2025-11-23 14:06:37] 2025-11-23 19:05:36,535 | INFO     | [payload] control thread has finished
[2025-11-23 14:06:37] 2025-11-23 19:05:36,657 | INFO     | [data] control thread has finished
[2025-11-23 14:06:37] 2025-11-23 19:05:36,671 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 14:06:37] 2025-11-23 19:05:36,679 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 14:06:37] 2025-11-23 19:05:37,005 | INFO     | [payload] failed_post thread has finished
[2025-11-23 14:06:37] 2025-11-23 19:05:37,523 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 14:06:37] 2025-11-23 19:05:37,582 | INFO     | [data] copytool_out thread has finished
[2025-11-23 14:06:37] 2025-11-23 19:05:37,986 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 14:06:37] 2025-11-23 19:05:38,992 | INFO     | [job] queue monitor thread has finished
[2025-11-23 14:06:37] 2025-11-23 19:05:39,026 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 14:06:37] 2025-11-23 19:06:04,662 | INFO     | PID=1600732 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 14:06:37] 2025-11-23 19:06:04,662 | INFO     | .. there are 3 such processes running
[2025-11-23 14:06:37] 2025-11-23 19:06:04,663 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 14:06:37] 2025-11-23 19:06:04,663 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 14:06:37] 2025-11-23 19:06:04,663 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 14:06:37] 2025-11-23 19:06:30,907 | INFO     | [monitor] cgroup control has ended
[2025-11-23 14:06:37] 2025-11-23 19:06:32,258 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 124141969971008)>', '<ExcThread(monitor, started 124141256566528)>']
[2025-11-23 14:06:37] 2025-11-23 19:06:32,810 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 14:06:37] 2025-11-23 19:06:32,811 | INFO     | [monitor] control thread has ended
[2025-11-23 14:06:37] 2025-11-23 19:06:37,283 | INFO     | all workflow threads have been joined
[2025-11-23 14:06:37] 2025-11-23 19:06:37,284 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 14:06:37] 2025-11-23 19:06:37,284 | INFO     | traces error code: 0
[2025-11-23 14:06:37] 2025-11-23 19:06:37,284 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 14:06:37] 2025-11-23 19:06:37,405 [wrapper] ==== pilot stdout END ====
[2025-11-23 14:06:37] 2025-11-23 19:06:37,408 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 14:06:37] 2025-11-23 19:06:37,411 [wrapper] pilotpid: 1600732
[2025-11-23 14:06:37] 2025-11-23 19:06:37,413 [wrapper] Pilot exit status: 0
[2025-11-23 14:06:37] 2025-11-23 19:06:37,437 [wrapper] pandaids: 6895324433
[2025-11-23 14:06:37] 2025-11-23 19:06:37,506 [wrapper] cleanup supervisor_pilot 1990378 1600733
[2025-11-23 14:06:37] 2025-11-23 19:06:37,511 [wrapper] Test setup, not cleaning
[2025-11-23 14:06:37] 2025-11-23 19:06:37,515 [wrapper] apfmon messages muted
[2025-11-23 14:06:37] 2025-11-23 19:06:37,518 [wrapper] ==== wrapper stdout END ====
[2025-11-23 14:06:37] 2025-11-23 19:06:37,520 [wrapper] ==== wrapper stderr END ====
[2025-11-23 14:06:37]  *** Error codes and diagnostics ***
[2025-11-23 14:06:37]     "exeErrorCode": 0,
[2025-11-23 14:06:37]     "exeErrorDiag": "",
[2025-11-23 14:06:37]     "pilotErrorCode": 0,
[2025-11-23 14:06:37]     "pilotErrorDiag": "",
[2025-11-23 14:06:37]  *** Listing of results directory ***
[2025-11-23 14:06:37] total 1331060
[2025-11-23 14:06:37] -rw-r--r-- 1 whitlerd whitlerd    576529 Nov 21 08:51 pilot3.tar.gz
[2025-11-23 14:06:37] -rwx------ 1 whitlerd whitlerd     36292 Nov 21 09:24 runpilot2-wrapper.sh
[2025-11-23 14:06:37] -rw-r--r-- 1 whitlerd whitlerd      5112 Nov 21 09:24 queuedata.json
[2025-11-23 14:06:37] -rw-rw-r-- 1 whitlerd whitlerd       100 Nov 22 18:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 14:06:37] -rwxr-xr-x 1 whitlerd whitlerd      7986 Nov 22 18:57 run_atlas
[2025-11-23 14:06:37] -rw-rw-r-- 1 whitlerd whitlerd       105 Nov 22 18:57 job.xml
[2025-11-23 14:06:37] -rw-r--r-- 2 whitlerd whitlerd 410063114 Nov 22 18:57 EVNT.47483658._000024.pool.root.1
[2025-11-23 14:06:37] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 22 18:57 start_atlas.sh
[2025-11-23 14:06:37] drwxrwx--x 2 whitlerd whitlerd      4096 Nov 22 18:57 shared
[2025-11-23 14:06:37] -rw-r--r-- 2 whitlerd whitlerd    590097 Nov 22 18:57 input.tar.gz
[2025-11-23 14:06:37] -rw-rw-r-- 1 whitlerd whitlerd      9104 Nov 22 18:57 init_data.xml
[2025-11-23 14:06:37] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 22 18:57 boinc_setup_complete
[2025-11-23 14:06:37] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 22 18:57 boinc_lockfile
[2025-11-23 14:06:37] -rw-rw-r-- 1 whitlerd whitlerd      2783 Nov 22 18:57 pandaJob.out
[2025-11-23 14:06:37] -rw------- 1 whitlerd whitlerd    989784 Nov 22 18:57 agis_schedconf.cvmfs.json
[2025-11-23 14:06:37] drwx------ 5 whitlerd whitlerd      4096 Nov 22 18:57 pilot3
[2025-11-23 14:06:37] -rw-rw-r-- 1 whitlerd whitlerd       532 Nov 23 13:58 boinc_task_state.xml
[2025-11-23 14:06:37] -rw------- 1 whitlerd whitlerd 925916713 Nov 23 14:04 HITS.47556137._000233.pool.root.1
[2025-11-23 14:06:37] -rw------- 1 whitlerd whitlerd      1048 Nov 23 14:05 memory_monitor_summary.json
[2025-11-23 14:06:37] -rw------- 1 whitlerd whitlerd   1526164 Nov 23 14:05 agis_ddmendpoints.agis.ALL.json
[2025-11-23 14:06:37] -rw------- 1 whitlerd whitlerd   1826004 Nov 23 14:05 log.47556137._000233.job.log.tgz.1
[2025-11-23 14:06:37] -rw------- 1 whitlerd whitlerd      8618 Nov 23 14:05 heartbeat.json
[2025-11-23 14:06:37] -rw------- 1 whitlerd whitlerd        95 Nov 23 14:06 pilot_heartbeat.json
[2025-11-23 14:06:37] -rw-rw-r-- 1 whitlerd whitlerd      8192 Nov 23 14:06 boinc_mmap_file
[2025-11-23 14:06:37] -rw-rw-r-- 1 whitlerd whitlerd        29 Nov 23 14:06 wrapper_checkpoint.txt
[2025-11-23 14:06:37] -rw------- 1 whitlerd whitlerd      4839 Nov 23 14:06 pilotlog.txt
[2025-11-23 14:06:37] -rw------- 1 whitlerd whitlerd   9723900 Nov 23 14:06 log.47556137._000233.job.log.1
[2025-11-23 14:06:37] -rw------- 1 whitlerd whitlerd       353 Nov 23 14:06 output.list
[2025-11-23 14:06:37] -rw-rw-r-- 1 whitlerd whitlerd       620 Nov 23 14:06 runtime_log
[2025-11-23 14:06:37] -rw------- 1 whitlerd whitlerd  11571200 Nov 23 14:06 result.tar.gz
[2025-11-23 14:06:37] -rw------- 1 whitlerd whitlerd       662 Nov 23 14:06 wlELDmiEhg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxTJKDmVejxgn.diag
[2025-11-23 14:06:37] -rw-rw-r-- 1 whitlerd whitlerd      9037 Nov 23 14:06 runtime_log.err
[2025-11-23 14:06:37] -rw-rw-r-- 1 whitlerd whitlerd     21466 Nov 23 14:06 stderr.txt
[2025-11-23 14:06:37] HITS file was successfully produced:
[2025-11-23 14:06:37] -rw------- 1 whitlerd whitlerd 925916713 Nov 23 14:04 shared/HITS.pool.root.1
[2025-11-23 14:06:37]  *** Contents of shared directory: ***
[2025-11-23 14:06:37] total 1316576
[2025-11-23 14:06:37] -rw-r--r-- 2 whitlerd whitlerd 410063114 Nov 22 18:57 ATLAS.root_0
[2025-11-23 14:06:37] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 22 18:57 start_atlas.sh
[2025-11-23 14:06:37] -rw-r--r-- 2 whitlerd whitlerd    590097 Nov 22 18:57 input.tar.gz
[2025-11-23 14:06:37] -rw------- 1 whitlerd whitlerd 925916713 Nov 23 14:04 HITS.pool.root.1
[2025-11-23 14:06:37] -rw------- 1 whitlerd whitlerd  11571200 Nov 23 14:06 result.tar.gz
14:06:38 (1596698): run_atlas exited; CPU time 276870.480922
14:06:38 (1596698): called boinc_finish(0)

</stderr_txt>
]]>

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