Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:36:13 (25979): wrapper (7.7.26015): starting
13:36:13 (25979): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 13:36:13] Arguments: --nthreads 8
[2025-11-25 13:36:13] Threads: 8
[2025-11-25 13:36:13] Checking for CVMFS
[2025-11-25 13:36:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 13:36:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 13:36:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 13:36:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 13:36:15] 2.11.2.0 12124 209800 141532 153281 0 85 23137843 25165824 4632 130560 34 85770396 99.882 39042116 2580 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 13:36:15] CVMFS is ok
[2025-11-25 13:36:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 13:36:15] Checking for apptainer binary...
[2025-11-25 13:36:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 13:36:15] Running /usr/bin/apptainer --version
[2025-11-25 13:36:16] apptainer version 1.3.2-1.el7
[2025-11-25 13:36:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 13:36:17] cg-vwn300.simple-grid.lan
[2025-11-25 13:36:17] apptainer works
[2025-11-25 13:36:17] Set ATHENA_PROC_NUMBER=8
[2025-11-25 13:36:17] Set ATHENA_CORE_NUMBER=8
[2025-11-25 13:36:18] Starting ATLAS job with PandaID=6895331156
[2025-11-25 13:36:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 14:40:08]  *** The last 200 lines of the pilot log: ***
[2025-11-26 14:40:08] 2025-11-26 13:39:13,119 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:40:08] 2025-11-26 13:39:13,376 | INFO     | time since job start (89928s) is within the limit (172800.0s)
[2025-11-26 14:40:08] 2025-11-26 13:39:15,388 | INFO     | time since job start (89930s) is within the limit (172800.0s)
[2025-11-26 14:40:08] 2025-11-26 13:39:15,623 | INFO     | monitor loop #6046: job 0:6895331156 is in state 'finished'
[2025-11-26 14:40:08] 2025-11-26 13:39:15,624 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:40:08] 2025-11-26 13:39:17,398 | INFO     | time since job start (89932s) is within the limit (172800.0s)
[2025-11-26 14:40:08] 2025-11-26 13:39:18,131 | INFO     | monitor loop #6047: job 0:6895331156 is in state 'finished'
[2025-11-26 14:40:08] 2025-11-26 13:39:18,132 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:40:08] 2025-11-26 13:39:19,405 | INFO     | time since job start (89934s) is within the limit (172800.0s)
[2025-11-26 14:40:08] 2025-11-26 13:39:20,645 | INFO     | monitor loop #6048: job 0:6895331156 is in state 'finished'
[2025-11-26 14:40:08] 2025-11-26 13:39:20,646 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:40:08] 2025-11-26 13:39:21,419 | INFO     | time since job start (89936s) is within the limit (172800.0s)
[2025-11-26 14:40:08] 2025-11-26 13:39:23,150 | INFO     | monitor loop #6049: job 0:6895331156 is in state 'finished'
[2025-11-26 14:40:08] 2025-11-26 13:39:23,151 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:40:08] 2025-11-26 13:39:23,425 | INFO     | time since job start (89938s) is within the limit (172800.0s)
[2025-11-26 14:40:08] 2025-11-26 13:39:23,426 | INFO     | 89945s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-26 14:40:08] 2025-11-26 13:39:23,477 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 14:40:08] 2025-11-26 13:39:23,478 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-11-26 14:40:08] 2025-11-26 13:39:23,480 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6895331156/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 14:40:08] 2025-11-26 13:39:23,481 | INFO     | extracted standard info from prmon json
[2025-11-26 14:40:08] 2025-11-26 13:39:23,481 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 14:40:08] 2025-11-26 13:39:23,481 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 14:40:08] 2025-11-26 13:39:23,509 | INFO     | fitting pss+swap vs Time
[2025-11-26 14:40:08] 2025-11-26 13:39:23,511 | INFO     | sum of square deviations: 972970231885.589
[2025-11-26 14:40:08] 2025-11-26 13:39:23,586 | INFO     | sum of deviations: 4047513625258.8296
[2025-11-26 14:40:08] 2025-11-26 13:39:23,586 | INFO     | mean x: 1764119581.6058743
[2025-11-26 14:40:08] 2025-11-26 13:39:23,586 | INFO     | mean y: 2843114.181693989
[2025-11-26 14:40:08] 2025-11-26 13:39:23,587 | INFO     | intersect: -7335817215.947815
[2025-11-26 14:40:08] 2025-11-26 13:39:23,588 | INFO     | chi2: 22.54652972254044
[2025-11-26 14:40:08] 2025-11-26 13:39:23,590 | INFO     | sum of square deviations: 963035730094.4537
[2025-11-26 14:40:08] 2025-11-26 13:39:23,655 | INFO     | sum of deviations: 4534956746547.663
[2025-11-26 14:40:08] 2025-11-26 13:39:23,655 | INFO     | mean x: 1764119429.1096642
[2025-11-26 14:40:08] 2025-11-26 13:39:23,655 | INFO     | mean y: 2850596.052090473
[2025-11-26 14:40:08] 2025-11-26 13:39:23,655 | INFO     | intersect: -8304427168.16132
[2025-11-26 14:40:08] 2025-11-26 13:39:23,657 | INFO     | chi2: 19.346692368490977
[2025-11-26 14:40:08] 2025-11-26 13:39:23,657 | INFO     | current chi2=19.346692368490977 (change=14.19215015981147 %)
[2025-11-26 14:40:08] 2025-11-26 13:39:23,657 | INFO     | right removable region: 1458
[2025-11-26 14:40:08] 2025-11-26 13:39:23,659 | INFO     | sum of square deviations: 963034742504.4539
[2025-11-26 14:40:08] 2025-11-26 13:39:23,736 | INFO     | sum of deviations: 3429727495641.6377
[2025-11-26 14:40:08] 2025-11-26 13:39:23,736 | INFO     | mean x: 1764119734.1096642
[2025-11-26 14:40:08] 2025-11-26 13:39:23,736 | INFO     | mean y: 2852596.352296093
[2025-11-26 14:40:08] 2025-11-26 13:39:23,736 | INFO     | intersect: -6279838661.436826
[2025-11-26 14:40:08] 2025-11-26 13:39:23,738 | INFO     | chi2: 17.738410365872824
[2025-11-26 14:40:08] 2025-11-26 13:39:23,738 | INFO     | current chi2=17.738410365872824 (change=21.32531886652515 %)
[2025-11-26 14:40:08] 2025-11-26 13:39:23,738 | INFO     | left removable region: 10
[2025-11-26 14:40:08] 2025-11-26 13:39:23,741 | INFO     | sum of square deviations: 941416396841.807
[2025-11-26 14:40:08] 2025-11-26 13:39:23,807 | INFO     | sum of deviations: 3501292495479.492
[2025-11-26 14:40:08] 2025-11-26 13:39:23,807 | INFO     | mean x: 1764119703.618094
[2025-11-26 14:40:08] 2025-11-26 13:39:23,807 | INFO     | mean y: 2870269.523480663
[2025-11-26 14:40:08] 2025-11-26 13:39:23,807 | INFO     | intersect: -6558199943.537036
[2025-11-26 14:40:08] 2025-11-26 13:39:23,809 | INFO     | chi2: 10.108989209990805
[2025-11-26 14:40:08] 2025-11-26 13:39:23,809 | INFO     | current memory leak: 3.72 B/s (using 1448 data points, chi2=10.11)
[2025-11-26 14:40:08] 2025-11-26 13:39:23,811 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-26 14:40:08] 2025-11-26 13:39:23,811 | INFO     | ..............................
[2025-11-26 14:40:08] 2025-11-26 13:39:23,811 | INFO     | . Timing measurements:
[2025-11-26 14:40:08] 2025-11-26 13:39:23,811 | INFO     | . get job = 0 s
[2025-11-26 14:40:08] 2025-11-26 13:39:23,811 | INFO     | . initial setup = 7 s
[2025-11-26 14:40:08] 2025-11-26 13:39:23,811 | INFO     | . payload setup = 169 s
[2025-11-26 14:40:08] 2025-11-26 13:39:23,811 | INFO     | . stage-in = 0 s
[2025-11-26 14:40:08] 2025-11-26 13:39:23,811 | INFO     | . payload execution = 89460 s
[2025-11-26 14:40:08] 2025-11-26 13:39:23,811 | INFO     | . stage-out = 9 s
[2025-11-26 14:40:08] 2025-11-26 13:39:23,811 | INFO     | . log creation = 2 s
[2025-11-26 14:40:08] 2025-11-26 13:39:23,812 | INFO     | ..............................
[2025-11-26 14:40:08] 2025-11-26 13:39:24,028 | INFO     | 
[2025-11-26 14:40:08] 2025-11-26 13:39:24,029 | INFO     | job summary report
[2025-11-26 14:40:08] 2025-11-26 13:39:24,029 | INFO     | --------------------------------------------------
[2025-11-26 14:40:08] 2025-11-26 13:39:24,029 | INFO     | PanDA job id: 6895331156
[2025-11-26 14:40:08] 2025-11-26 13:39:24,029 | INFO     | task id: 47556137
[2025-11-26 14:40:08] 2025-11-26 13:39:24,029 | INFO     | errors: (none)
[2025-11-26 14:40:08] 2025-11-26 13:39:24,029 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 14:40:08] 2025-11-26 13:39:24,029 | INFO     | pilot state: finished 
[2025-11-26 14:40:08] 2025-11-26 13:39:24,029 | INFO     | transexitcode: 0
[2025-11-26 14:40:08] 2025-11-26 13:39:24,029 | INFO     | exeerrorcode: 0
[2025-11-26 14:40:08] 2025-11-26 13:39:24,029 | INFO     | exeerrordiag: 
[2025-11-26 14:40:08] 2025-11-26 13:39:24,030 | INFO     | exitcode: 0
[2025-11-26 14:40:08] 2025-11-26 13:39:24,030 | INFO     | exitmsg: OK
[2025-11-26 14:40:08] 2025-11-26 13:39:24,030 | INFO     | cpuconsumptiontime: 335917 s
[2025-11-26 14:40:08] 2025-11-26 13:39:24,030 | INFO     | nevents: 1000
[2025-11-26 14:40:08] 2025-11-26 13:39:24,030 | INFO     | neventsw: 0
[2025-11-26 14:40:08] 2025-11-26 13:39:24,030 | INFO     | pid: 3947
[2025-11-26 14:40:08] 2025-11-26 13:39:24,030 | INFO     | pgrp: 3947
[2025-11-26 14:40:08] 2025-11-26 13:39:24,030 | INFO     | corecount: 8
[2025-11-26 14:40:08] 2025-11-26 13:39:24,030 | INFO     | event service: False
[2025-11-26 14:40:08] 2025-11-26 13:39:24,030 | INFO     | sizes: {0: 2283436, 1: 2284121, 2: 2284320, 13: 2284320, 24: 2284376, 34: 2284404, 45: 2284560, 56: 2284588, 67: 2284616, 77: 2284644, 88: 2284700, 95: 2285270, 99
[2025-11-26 14:40:08] 2025-11-26 13:39:24,030 | INFO     | --------------------------------------------------
[2025-11-26 14:40:08] 2025-11-26 13:39:24,031 | INFO     | 
[2025-11-26 14:40:08] 2025-11-26 13:39:24,031 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-26 14:40:08] 2025-11-26 13:39:24,509 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 14:40:08] 2025-11-26 13:39:24,509 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 14:40:08] 2025-11-26 13:39:24,509 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 14:40:08] 2025-11-26 13:39:24,509 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 14:40:08] 2025-11-26 13:39:24,510 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 14:40:08] 2025-11-26 13:39:24,510 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 14:40:08] 2025-11-26 13:39:24,510 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 14:40:08] 2025-11-26 13:39:24,510 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 14:40:08] 2025-11-26 13:39:24,510 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 14:40:08] 2025-11-26 13:39:24,510 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 14:40:08] 2025-11-26 13:39:24,510 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 14:40:08] 2025-11-26 13:39:24,510 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 14:40:08] 2025-11-26 13:39:24,511 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 14:40:08] 2025-11-26 13:39:24,511 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 14:40:08] 2025-11-26 13:39:24,511 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 14:40:08] 2025-11-26 13:39:24,511 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 14:40:08] 2025-11-26 13:39:24,511 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 14:40:08] 2025-11-26 13:39:24,511 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 14:40:08] 2025-11-26 13:39:24,511 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 14:40:08] 2025-11-26 13:39:24,511 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 14:40:08] 2025-11-26 13:39:24,512 | INFO     | job 6895331156 has completed (purged errors)
[2025-11-26 14:40:08] 2025-11-26 13:39:24,512 | INFO     | overall cleanup function is called
[2025-11-26 14:40:08] 2025-11-26 13:39:25,528 | INFO     | --- collectZombieJob: --- 10, [3947]
[2025-11-26 14:40:08] 2025-11-26 13:39:25,529 | INFO     | zombie collector waiting for pid 3947
[2025-11-26 14:40:08] 2025-11-26 13:39:25,529 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 14:40:08] 2025-11-26 13:39:25,529 | INFO     | collected zombie processes
[2025-11-26 14:40:08] 2025-11-26 13:39:25,529 | INFO     | will attempt to kill all subprocesses of pid=3947
[2025-11-26 14:40:08] 2025-11-26 13:39:25,650 | INFO     | process IDs to be killed: [3947] (in reverse order)
[2025-11-26 14:40:08] 2025-11-26 13:39:25,716 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 14:40:08] 2025-11-26 13:39:25,716 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 14:40:08] 2025-11-26 13:39:25,720 | INFO     | did not find any defunct processes belonging to 3947
[2025-11-26 14:40:08] 2025-11-26 13:39:25,723 | INFO     | did not find any defunct processes belonging to 3947
[2025-11-26 14:40:08] 2025-11-26 13:39:25,725 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 14:40:08] 2025-11-26 13:39:25,725 | INFO     | ready for new job
[2025-11-26 14:40:08] 2025-11-26 13:39:25,725 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 14:40:08] 2025-11-26 13:39:25,730 | INFO     | ***************************************
[2025-11-26 14:40:08] 2025-11-26 13:39:25,731 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 14:40:08] 2025-11-26 13:39:25,731 | INFO     | ***************************************
[2025-11-26 14:40:08] 2025-11-26 13:39:25,731 | INFO     | 
[2025-11-26 14:40:08] 2025-11-26 13:39:25,731 | INFO     | pilot is running in a VM
[2025-11-26 14:40:08] 2025-11-26 13:39:25,731 | INFO     | architecture information:
[2025-11-26 14:40:08] 2025-11-26 13:39:25,732 | INFO     | executing command: cat /etc/os-release
[2025-11-26 14:40:08] 2025-11-26 13:39:25,754 | INFO     | cat /etc/os-release:
[2025-11-26 14:40:08] NAME="CentOS Linux"
[2025-11-26 14:40:08] VERSION="7 (Core)"
[2025-11-26 14:40:08] ID="centos"
[2025-11-26 14:40:08] ID_LIKE="rhel fedora"
[2025-11-26 14:40:08] VERSION_ID="7"
[2025-11-26 14:40:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 14:40:08] ANSI_COLOR="0;31"
[2025-11-26 14:40:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 14:40:08] HOME_URL="https://www.centos.org/"
[2025-11-26 14:40:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 14:40:08] 
[2025-11-26 14:40:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 14:40:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 14:40:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 14:40:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 14:40:08] 
[2025-11-26 14:40:08] 2025-11-26 13:39:25,755 | INFO     | ***************************************
[2025-11-26 14:40:08] 2025-11-26 13:39:26,259 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-26 14:40:08] 2025-11-26 13:39:26,418 | INFO     | sufficient remaining disk space (495515074560 B)
[2025-11-26 14:40:08] 2025-11-26 13:39:26,418 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 14:40:08] 2025-11-26 13:39:26,419 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 14:40:08] 2025-11-26 13:39:26,419 | INFO     | update_server=False
[2025-11-26 14:40:08] 2025-11-26 13:39:26,419 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 14:40:08] 2025-11-26 13:39:26,660 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 14:40:08] 2025-11-26 13:39:26,661 | INFO     | aborting loop
[2025-11-26 14:40:08] 2025-11-26 13:39:26,926 | INFO     | all payload control threads have been joined
[2025-11-26 14:40:08] 2025-11-26 13:39:26,936 | INFO     | all data control threads have been joined
[2025-11-26 14:40:08] 2025-11-26 13:39:27,069 | INFO     | all job control threads have been joined
[2025-11-26 14:40:08] 2025-11-26 13:39:27,157 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 14:40:08] 2025-11-26 13:39:27,425 | INFO     | [job] retrieve thread has finished
[2025-11-26 14:40:08] 2025-11-26 13:39:27,444 | INFO     | [data] copytool_in thread has finished
[2025-11-26 14:40:08] 2025-11-26 13:39:27,448 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 14:40:08] 2025-11-26 13:39:27,455 | INFO     | [job] validate thread has finished
[2025-11-26 14:40:08] 2025-11-26 13:39:27,617 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 14:40:08] 2025-11-26 13:39:27,667 | INFO     | [job] job monitor thread has finished
[2025-11-26 14:40:08] 2025-11-26 13:39:27,883 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 14:40:08] 2025-11-26 13:39:27,928 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 14:40:08] 2025-11-26 13:39:27,932 | INFO     | [payload] control thread has finished
[2025-11-26 14:40:08] 2025-11-26 13:39:27,943 | INFO     | [data] control thread has finished
[2025-11-26 14:40:08] 2025-11-26 13:39:27,998 | INFO     | [payload] failed_post thread has finished
[2025-11-26 14:40:08] 2025-11-26 13:39:28,075 | INFO     | [job] control thread has finished
[2025-11-26 14:40:08] 2025-11-26 13:39:28,452 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 14:40:08] 2025-11-26 13:39:28,945 | INFO     | [payload] validate_post thread has finished
[2025-11-26 14:40:08] 2025-11-26 13:39:28,954 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 14:40:08] 2025-11-26 13:39:29,164 | INFO     | [data] copytool_out thread has finished
[2025-11-26 14:40:08] 2025-11-26 13:39:29,961 | INFO     | [job] queue monitor thread has finished
[2025-11-26 14:40:08] 2025-11-26 13:39:31,892 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 14:40:08] 2025-11-26 13:39:56,578 | INFO     | PID=29805 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 14:40:08] 2025-11-26 13:39:56,578 | INFO     | .. there are 9 such processes running
[2025-11-26 14:40:08] 2025-11-26 13:39:56,578 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 14:40:08] 2025-11-26 13:39:56,578 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 14:40:08] 2025-11-26 13:39:56,578 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 14:40:08] 2025-11-26 13:40:01,361 | INFO     | [monitor] cgroup control has ended
[2025-11-26 14:40:08] 2025-11-26 13:40:01,463 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140129325664064)>', '<ExcThread(monitor, started 140128659953408)>']
[2025-11-26 14:40:08] 2025-11-26 13:40:01,608 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 14:40:08] 2025-11-26 13:40:01,609 | INFO     | [monitor] control thread has ended
[2025-11-26 14:40:08] 2025-11-26 13:40:06,489 | INFO     | all workflow threads have been joined
[2025-11-26 14:40:08] 2025-11-26 13:40:06,490 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 14:40:08] 2025-11-26 13:40:06,490 | INFO     | traces error code: 0
[2025-11-26 14:40:08] 2025-11-26 13:40:06,490 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 14:40:08] 2025-11-26 13:40:06,707 [wrapper] ==== pilot stdout END ====
[2025-11-26 14:40:08] 2025-11-26 13:40:06,750 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 14:40:08] 2025-11-26 13:40:06,761 [wrapper] pilotpid: 29805
[2025-11-26 14:40:08] 2025-11-26 13:40:06,804 [wrapper] Pilot exit status: 0
[2025-11-26 14:40:08] 2025-11-26 13:40:07,114 [wrapper] pandaids: 6895331156
[2025-11-26 14:40:08] 2025-11-26 13:40:07,682 [wrapper] cleanup supervisor_pilot  5888 29806
[2025-11-26 14:40:08] 2025-11-26 13:40:07,699 [wrapper] Test setup, not cleaning
[2025-11-26 14:40:08] 2025-11-26 13:40:07,713 [wrapper] apfmon messages muted
[2025-11-26 14:40:08] 2025-11-26 13:40:07,776 [wrapper] ==== wrapper stdout END ====
[2025-11-26 14:40:08] 2025-11-26 13:40:07,839 [wrapper] ==== wrapper stderr END ====
[2025-11-26 14:40:08]  *** Error codes and diagnostics ***
[2025-11-26 14:40:08]     "exeErrorCode": 0,
[2025-11-26 14:40:08]     "exeErrorDiag": "",
[2025-11-26 14:40:08]     "pilotErrorCode": 0,
[2025-11-26 14:40:08]     "pilotErrorDiag": "",
[2025-11-26 14:40:08]  *** Listing of results directory ***
[2025-11-26 14:40:09] total 1343476
[2025-11-26 14:40:09] -rw-r--r--. 1 boinc boinc    576529 Nov 21 23:39 pilot3.tar.gz
[2025-11-26 14:40:09] -rw-r--r--. 1 boinc boinc      5112 Nov 22 00:02 queuedata.json
[2025-11-26 14:40:09] -rwx------. 1 boinc boinc     36292 Nov 22 00:04 runpilot2-wrapper.sh
[2025-11-26 14:40:09] -rw-r--r--. 1 boinc boinc       100 Nov 25 13:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 14:40:09] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 13:36 run_atlas
[2025-11-26 14:40:09] -rw-r--r--. 1 boinc boinc       105 Nov 25 13:36 job.xml
[2025-11-26 14:40:09] -rw-r--r--. 2 boinc boinc 410405260 Nov 25 13:36 EVNT.47483658._000162.pool.root.1
[2025-11-26 14:40:09] -rw-r--r--. 1 boinc boinc      6391 Nov 25 13:36 init_data.xml
[2025-11-26 14:40:09] -rw-r--r--. 2 boinc boinc     15847 Nov 25 13:36 start_atlas.sh
[2025-11-26 14:40:09] drwxrwx--x. 2 boinc boinc        68 Nov 25 13:36 shared
[2025-11-26 14:40:09] -rw-r--r--. 2 boinc boinc    590103 Nov 25 13:36 input.tar.gz
[2025-11-26 14:40:09] -rw-r--r--. 1 boinc boinc         0 Nov 25 13:36 boinc_lockfile
[2025-11-26 14:40:09] -rw-r--r--. 1 boinc boinc      2785 Nov 25 13:36 pandaJob.out
[2025-11-26 14:40:09] -rw-------. 1 boinc boinc    991894 Nov 25 13:40 agis_schedconf.cvmfs.json
[2025-11-26 14:40:09] drwx------. 5 boinc boinc      4096 Nov 25 13:40 pilot3
[2025-11-26 14:40:09] -rw-r--r--. 1 boinc boinc       533 Nov 26 14:17 boinc_task_state.xml
[2025-11-26 14:40:09] -rw-------. 1 boinc boinc 932374307 Nov 26 14:36 HITS.47556137._001618.pool.root.1
[2025-11-26 14:40:09] -rw-------. 1 boinc boinc      1030 Nov 26 14:37 memory_monitor_summary.json
[2025-11-26 14:40:09] -rw-------. 1 boinc boinc   1516240 Nov 26 14:37 agis_ddmendpoints.agis.ALL.json
[2025-11-26 14:40:09] -rw-------. 1 boinc boinc   2539399 Nov 26 14:37 log.47556137._001618.job.log.tgz.1
[2025-11-26 14:40:09] -rw-------. 1 boinc boinc      7950 Nov 26 14:39 heartbeat.json
[2025-11-26 14:40:09] -rw-------. 1 boinc boinc        95 Nov 26 14:39 pilot_heartbeat.json
[2025-11-26 14:40:09] -rw-r--r--. 1 boinc boinc      8192 Nov 26 14:39 boinc_mmap_file
[2025-11-26 14:40:09] -rw-r--r--. 1 boinc boinc        29 Nov 26 14:39 wrapper_checkpoint.txt
[2025-11-26 14:40:09] -rw-------. 1 boinc boinc      4884 Nov 26 14:40 pilotlog.txt
[2025-11-26 14:40:09] -rw-------. 1 boinc boinc  11980443 Nov 26 14:40 log.47556137._001618.job.log.1
[2025-11-26 14:40:09] -rw-------. 1 boinc boinc       353 Nov 26 14:40 output.list
[2025-11-26 14:40:09] -rw-r--r--. 1 boinc boinc       620 Nov 26 14:40 runtime_log
[2025-11-26 14:40:09] -rw-------. 1 boinc boinc  14540800 Nov 26 14:40 result.tar.gz
[2025-11-26 14:40:09] -rw-------. 1 boinc boinc       662 Nov 26 14:40 z9fKDmZMpg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIlJKDmOAoK2m.diag
[2025-11-26 14:40:09] -rw-r--r--. 1 boinc boinc      8817 Nov 26 14:40 runtime_log.err
[2025-11-26 14:40:09] -rw-r--r--. 1 boinc boinc     21457 Nov 26 14:40 stderr.txt
[2025-11-26 14:40:09] HITS file was successfully produced:
[2025-11-26 14:40:09] -rw-------. 1 boinc boinc 932374307 Nov 26 14:36 shared/HITS.pool.root.1
[2025-11-26 14:40:09]  *** Contents of shared directory: ***
[2025-11-26 14:40:09] total 1326108
[2025-11-26 14:40:09] -rw-r--r--. 2 boinc boinc 410405260 Nov 25 13:36 ATLAS.root_0
[2025-11-26 14:40:09] -rw-r--r--. 2 boinc boinc     15847 Nov 25 13:36 start_atlas.sh
[2025-11-26 14:40:09] -rw-r--r--. 2 boinc boinc    590103 Nov 25 13:36 input.tar.gz
[2025-11-26 14:40:09] -rw-------. 1 boinc boinc 932374307 Nov 26 14:36 HITS.pool.root.1
[2025-11-26 14:40:09] -rw-------. 1 boinc boinc  14540800 Nov 26 14:40 result.tar.gz
14:40:10 (25979): run_atlas exited; CPU time 336591.045625
14:40:10 (25979): called boinc_finish(0)

</stderr_txt>
]]>

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