Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:28:12 (3569021): wrapper (7.7.26015): starting
17:28:12 (3569021): wrapper: running run_atlas (--nthreads 2)
[2025-11-25 17:28:12] Arguments: --nthreads 2
[2025-11-25 17:28:12] Threads: 2
[2025-11-25 17:28:12] Checking for CVMFS
[2025-11-25 17:28:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 17:28:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 17:28:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 17:28:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 17:28:13] 2.9.2.0 2377071 10192 61332 153289 3 81 18437846 36864001 0 130560 0 3274483 99.924 527010 4162 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 17:28:13] CVMFS is ok
[2025-11-25 17:28:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 17:28:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 17:28:13] Further information can be found at the LHC@home message board.
[2025-11-25 17:28:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 17:28:13] Checking for apptainer binary...
[2025-11-25 17:28:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 17:28:13] Running /usr/bin/apptainer --version
[2025-11-25 17:28:13] apptainer version 1.4.1-1.1
[2025-11-25 17:28:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 17:28:13] thA334a
[2025-11-25 17:28:13] apptainer works
[2025-11-25 17:28:13] Set ATHENA_PROC_NUMBER=2
[2025-11-25 17:28:13] Set ATHENA_CORE_NUMBER=2
[2025-11-25 17:28:13] Starting ATLAS job with PandaID=6895331555
[2025-11-25 17:28:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 05:43:34]  *** The last 200 lines of the pilot log: ***
[2025-11-26 05:43:34] 2025-11-26 04:42:59,181 | INFO     | process IDs to be killed: [3579153] (in reverse order)
[2025-11-26 05:43:34] 2025-11-26 04:42:59,202 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 05:43:34] 2025-11-26 04:42:59,203 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 05:43:34] 2025-11-26 04:42:59,203 | INFO     | did not find any defunct processes belonging to 3579153
[2025-11-26 05:43:34] 2025-11-26 04:42:59,204 | INFO     | did not find any defunct processes belonging to 3579153
[2025-11-26 05:43:34] 2025-11-26 04:42:59,205 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 05:43:34] 2025-11-26 04:42:59,205 | INFO     | ready for new job
[2025-11-26 05:43:34] 2025-11-26 04:42:59,205 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 05:43:34] 2025-11-26 04:42:59,206 | INFO     | ***************************************
[2025-11-26 05:43:34] 2025-11-26 04:42:59,206 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 05:43:34] 2025-11-26 04:42:59,206 | INFO     | ***************************************
[2025-11-26 05:43:34] 2025-11-26 04:42:59,206 | INFO     | 
[2025-11-26 05:43:34] 2025-11-26 04:42:59,206 | INFO     | architecture information:
[2025-11-26 05:43:34] 2025-11-26 04:42:59,206 | INFO     | executing command: cat /etc/os-release
[2025-11-26 05:43:34] 2025-11-26 04:42:59,214 | INFO     | cat /etc/os-release:
[2025-11-26 05:43:34] NAME="CentOS Linux"
[2025-11-26 05:43:34] VERSION="7 (Core)"
[2025-11-26 05:43:34] ID="centos"
[2025-11-26 05:43:34] ID_LIKE="rhel fedora"
[2025-11-26 05:43:34] VERSION_ID="7"
[2025-11-26 05:43:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 05:43:34] ANSI_COLOR="0;31"
[2025-11-26 05:43:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 05:43:34] HOME_URL="https://www.centos.org/"
[2025-11-26 05:43:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 05:43:34] 
[2025-11-26 05:43:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 05:43:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 05:43:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 05:43:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 05:43:34] 
[2025-11-26 05:43:34] 2025-11-26 04:42:59,214 | INFO     | ***************************************
[2025-11-26 05:43:34] 2025-11-26 04:42:59,718 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 05:43:34] 2025-11-26 04:42:59,729 | INFO     | sufficient remaining disk space (503192748032 B)
[2025-11-26 05:43:34] 2025-11-26 04:42:59,729 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 05:43:34] 2025-11-26 04:42:59,730 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 05:43:34] 2025-11-26 04:42:59,730 | INFO     | update_server=False
[2025-11-26 05:43:34] 2025-11-26 04:42:59,730 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 05:43:34] 2025-11-26 04:42:59,860 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 05:43:34] 2025-11-26 04:43:00,120 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 05:43:34] 2025-11-26 04:43:00,120 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 05:43:34] 2025-11-26 04:43:00,120 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:43:34] 2025-11-26 04:43:00,121 | INFO     | will abort loop
[2025-11-26 05:43:34] 2025-11-26 04:43:00,382 | INFO     | all data control threads have been joined
[2025-11-26 05:43:34] 2025-11-26 04:43:00,629 | INFO     | all payload control threads have been joined
[2025-11-26 05:43:34] 2025-11-26 04:43:00,735 | INFO     | [job] retrieve thread has finished
[2025-11-26 05:43:34] 2025-11-26 04:43:01,041 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 05:43:34] 2025-11-26 04:43:01,126 | INFO     | [job] job monitor thread has finished
[2025-11-26 05:43:34] 2025-11-26 04:43:01,270 | INFO     | [data] copytool_in thread has finished
[2025-11-26 05:43:34] 2025-11-26 04:43:01,296 | INFO     | [payload] failed_post thread has finished
[2025-11-26 05:43:34] 2025-11-26 04:43:01,303 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 05:43:34] 2025-11-26 04:43:01,317 | INFO     | all job control threads have been joined
[2025-11-26 05:43:34] 2025-11-26 04:43:01,388 | INFO     | [data] control thread has finished
[2025-11-26 05:43:34] 2025-11-26 04:43:01,634 | INFO     | [payload] control thread has finished
[2025-11-26 05:43:34] 2025-11-26 04:43:01,741 | INFO     | [job] validate thread has finished
[2025-11-26 05:43:34] 2025-11-26 04:43:01,866 | INFO     | [data] copytool_out thread has finished
[2025-11-26 05:43:34] 2025-11-26 04:43:01,996 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 05:43:34] 2025-11-26 04:43:02,057 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 05:43:34] 2025-11-26 04:43:02,136 | INFO     | [payload] validate_post thread has finished
[2025-11-26 05:43:34] 2025-11-26 04:43:02,323 | INFO     | [job] control thread has finished
[2025-11-26 05:43:34] 2025-11-26 04:43:02,676 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:43:34] 2025-11-26 04:43:03,682 | INFO     | [job] queue monitor thread has finished
[2025-11-26 05:43:34] 2025-11-26 04:43:05,049 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 05:43:34] 2025-11-26 04:43:09,854 | INFO     | job.realtimelogging is not enabled
[2025-11-26 05:43:34] 2025-11-26 04:43:10,860 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 05:43:34] 2025-11-26 04:43:23,166 [wrapper] supervise_pilot (15 min periods counter: 50)
[2025-11-26 05:43:34] 2025-11-26 04:43:27,756 | INFO     | [monitor] cgroup control has ended
[2025-11-26 05:43:34] 2025-11-26 04:43:29,177 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140656003327808)>', '<ExcThread(monitor, started 140655128991488)>']
[2025-11-26 05:43:34] 2025-11-26 04:43:30,394 | INFO     | PID=3572733 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 05:43:34] 2025-11-26 04:43:30,394 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 05:43:34] 2025-11-26 04:43:30,394 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 05:43:34] 2025-11-26 04:43:30,394 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 05:43:34] 2025-11-26 04:43:30,394 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 05:43:34] 2025-11-26 04:43:30,394 | INFO     | [monitor] control thread has ended
[2025-11-26 05:43:34] 2025-11-26 04:43:34,204 | INFO     | all workflow threads have been joined
[2025-11-26 05:43:34] 2025-11-26 04:43:34,205 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 05:43:34] 2025-11-26 04:43:34,205 | INFO     | traces error code: 0
[2025-11-26 05:43:34] 2025-11-26 04:43:34,206 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 05:43:34] 2025-11-26 04:43:34,248 [wrapper] ==== pilot stdout END ====
[2025-11-26 05:43:34] 2025-11-26 04:43:34,250 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 05:43:34] 2025-11-26 04:43:34,253 [wrapper] pilotpid: 3572733
[2025-11-26 05:43:34] 2025-11-26 04:43:34,255 [wrapper] Pilot exit status: 0
[2025-11-26 05:43:34] 2025-11-26 04:43:34,261 [wrapper] pandaids: 6895331555
[2025-11-26 05:43:34] 2025-11-26 04:43:34,273 [wrapper] cleanup supervisor_pilot 3654402 3572734
[2025-11-26 05:43:34] 2025-11-26 04:43:34,275 [wrapper] Test setup, not cleaning
[2025-11-26 05:43:34] 2025-11-26 04:43:34,277 [wrapper] apfmon messages muted
[2025-11-26 05:43:34] 2025-11-26 04:43:34,279 [wrapper] ==== wrapper stdout END ====
[2025-11-26 05:43:34] 2025-11-26 04:43:34,281 [wrapper] ==== wrapper stderr END ====
[2025-11-26 05:43:34]  *** Error codes and diagnostics ***
[2025-11-26 05:43:34]     "exeErrorCode": 0,
[2025-11-26 05:43:34]     "exeErrorDiag": "",
[2025-11-26 05:43:34]     "pilotErrorCode": 0,
[2025-11-26 05:43:34]     "pilotErrorDiag": "",
[2025-11-26 05:43:34]  *** Listing of results directory ***
[2025-11-26 05:43:34] total 1315960
[2025-11-26 05:43:34] -rw-r--r-- 1 boinc boinc    576529 Nov 22 00:30 pilot3.tar.gz
[2025-11-26 05:43:34] -rwx------ 1 boinc boinc     36292 Nov 22 00:42 runpilot2-wrapper.sh
[2025-11-26 05:43:34] -rw-r--r-- 1 boinc boinc      5112 Nov 22 00:42 queuedata.json
[2025-11-26 05:43:34] -rw-r--r-- 1 boinc boinc       100 Nov 25 17:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 05:43:34] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 17:28 run_atlas
[2025-11-26 05:43:34] -rw-r--r-- 1 boinc boinc       105 Nov 25 17:28 job.xml
[2025-11-26 05:43:34] -rw-r--r-- 2 boinc boinc 408659004 Nov 25 17:28 EVNT.47483658._000176.pool.root.1
[2025-11-26 05:43:34] -rw-r--r-- 2 boinc boinc    590105 Nov 25 17:28 input.tar.gz
[2025-11-26 05:43:34] -rw-r--r-- 2 boinc boinc     15847 Nov 25 17:28 start_atlas.sh
[2025-11-26 05:43:34] drwxrwx--x 2 boinc boinc      4096 Nov 25 17:28 shared
[2025-11-26 05:43:34] -rw-r--r-- 1 boinc boinc         0 Nov 25 17:28 boinc_setup_complete
[2025-11-26 05:43:34] -rw-r--r-- 1 boinc boinc      6208 Nov 25 17:28 init_data.xml
[2025-11-26 05:43:34] -rw-r--r-- 1 boinc boinc         0 Nov 25 17:28 boinc_lockfile
[2025-11-26 05:43:34] -rw-r--r-- 1 boinc boinc      2785 Nov 25 17:28 pandaJob.out
[2025-11-26 05:43:34] -rw------- 1 boinc boinc    991543 Nov 25 17:28 agis_schedconf.cvmfs.json
[2025-11-26 05:43:34] drwx------ 5 boinc boinc      4096 Nov 25 17:28 pilot3
[2025-11-26 05:43:34] -rw-r--r-- 1 boinc boinc       531 Nov 26 05:39 boinc_task_state.xml
[2025-11-26 05:43:34] -rw------- 1 boinc boinc 920166754 Nov 26 05:42 HITS.47556137._001755.pool.root.1
[2025-11-26 05:43:34] -rw------- 1 boinc boinc      1022 Nov 26 05:42 memory_monitor_summary.json
[2025-11-26 05:43:34] -rw------- 1 boinc boinc        95 Nov 26 05:42 pilot_heartbeat.json
[2025-11-26 05:43:34] -rw------- 1 boinc boinc   1516240 Nov 26 05:42 agis_ddmendpoints.agis.ALL.json
[2025-11-26 05:43:34] -rw------- 1 boinc boinc   1217856 Nov 26 05:42 log.47556137._001755.job.log.tgz.1
[2025-11-26 05:43:34] -rw------- 1 boinc boinc      8563 Nov 26 05:42 heartbeat.json
[2025-11-26 05:43:34] -rw-r--r-- 1 boinc boinc        28 Nov 26 05:43 wrapper_checkpoint.txt
[2025-11-26 05:43:34] -rw-r--r-- 1 boinc boinc      8192 Nov 26 05:43 boinc_mmap_file
[2025-11-26 05:43:34] -rw------- 1 boinc boinc      5010 Nov 26 05:43 pilotlog.txt
[2025-11-26 05:43:34] -rw------- 1 boinc boinc   6185202 Nov 26 05:43 log.47556137._001755.job.log.1
[2025-11-26 05:43:34] -rw------- 1 boinc boinc       353 Nov 26 05:43 output.list
[2025-11-26 05:43:34] -rw-r--r-- 1 boinc boinc       620 Nov 26 05:43 runtime_log
[2025-11-26 05:43:34] -rw------- 1 boinc boinc   7424000 Nov 26 05:43 result.tar.gz
[2025-11-26 05:43:34] -rw-r--r-- 1 boinc boinc      8903 Nov 26 05:43 runtime_log.err
[2025-11-26 05:43:34] -rw------- 1 boinc boinc       666 Nov 26 05:43 2zBNDmXwpg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmBrHKDmb0023m.diag
[2025-11-26 05:43:34] -rw-r--r-- 1 boinc boinc     10734 Nov 26 05:43 stderr.txt
[2025-11-26 05:43:35] HITS file was successfully produced:
[2025-11-26 05:43:35] -rw------- 1 boinc boinc 920166754 Nov 26 05:42 shared/HITS.pool.root.1
[2025-11-26 05:43:35]  *** Contents of shared directory: ***
[2025-11-26 05:43:35] total 1305540
[2025-11-26 05:43:35] -rw-r--r-- 2 boinc boinc 408659004 Nov 25 17:28 ATLAS.root_0
[2025-11-26 05:43:35] -rw-r--r-- 2 boinc boinc    590105 Nov 25 17:28 input.tar.gz
[2025-11-26 05:43:35] -rw-r--r-- 2 boinc boinc     15847 Nov 25 17:28 start_atlas.sh
[2025-11-26 05:43:35] -rw------- 1 boinc boinc 920166754 Nov 26 05:42 HITS.pool.root.1
[2025-11-26 05:43:35] -rw------- 1 boinc boinc   7424000 Nov 26 05:43 result.tar.gz
05:43:36 (3569021): run_atlas exited; CPU time 87385.469388
05:43:36 (3569021): called boinc_finish(0)

</stderr_txt>
]]>

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