Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
11:02:07 (519642): wrapper (7.7.26015): starting
11:02:07 (519642): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 11:02:07] Arguments: --nthreads 8
[2025-11-23 11:02:07] Threads: 8
[2025-11-23 11:02:07] Checking for CVMFS
[2025-11-23 11:02:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 11:02:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 11:02:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 11:02:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 11:02:09] 2.11.5.0 6031 2710 161380 153203 3 89 2710324 4194305 17040 130560 0 20674377 99.974 395383 441 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-11-23 11:02:09] CVMFS is ok
[2025-11-23 11:02:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 11:02:09] Checking for apptainer binary...
[2025-11-23 11:02:09] apptainer is not installed, using version from CVMFS
[2025-11-23 11:02:09] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 11:02:09] mikemint-desktop
[2025-11-23 11:02:09] apptainer works
[2025-11-23 11:02:09] Set ATHENA_PROC_NUMBER=8
[2025-11-23 11:02:09] Set ATHENA_CORE_NUMBER=8
[2025-11-23 11:02:09] Starting ATLAS job with PandaID=6894292431
[2025-11-23 11:02:09] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 02:01:54]  *** The last 200 lines of the pilot log: ***
[2025-11-24 02:01:54] 2025-11-24 01:00:54,102 | INFO     | chi2: 13.324955283222229
[2025-11-24 02:01:54] 2025-11-24 01:00:54,103 | INFO     | sum of square deviations: 207731715570.83072
[2025-11-24 02:01:54] 2025-11-24 01:00:54,148 | INFO     | sum of deviations: 1279296760558.5752
[2025-11-24 02:01:54] 2025-11-24 01:00:54,148 | INFO     | mean x: 1763918995.0365715
[2025-11-24 02:01:54] 2025-11-24 01:00:54,149 | INFO     | mean y: 2847252.950857143
[2025-11-24 02:01:54] 2025-11-24 01:00:54,149 | INFO     | intersect: -10860086459.588545
[2025-11-24 02:01:54] 2025-11-24 01:00:54,150 | INFO     | chi2: 9.773255102057693
[2025-11-24 02:01:54] 2025-11-24 01:00:54,150 | INFO     | current chi2=9.773255102057693 (change=26.654499813868547 %)
[2025-11-24 02:01:54] 2025-11-24 01:00:54,151 | INFO     | sum of square deviations: 204191190927.92676
[2025-11-24 02:01:54] 2025-11-24 01:00:54,190 | INFO     | sum of deviations: 1611318023593.3628
[2025-11-24 02:01:54] 2025-11-24 01:00:54,195 | INFO     | mean x: 1763918842.5425286
[2025-11-24 02:01:54] 2025-11-24 01:00:54,195 | INFO     | mean y: 2861552.463218391
[2025-11-24 02:01:54] 2025-11-24 01:00:54,195 | INFO     | intersect: -13916613671.85212
[2025-11-24 02:01:54] 2025-11-24 01:00:54,196 | INFO     | chi2: 5.7690389864366205
[2025-11-24 02:01:54] 2025-11-24 01:00:54,196 | INFO     | current chi2=5.7690389864366205 (change=40.97116133577657 %)
[2025-11-24 02:01:54] 2025-11-24 01:00:54,198 | INFO     | sum of square deviations: 200691079335.05658
[2025-11-24 02:01:54] 2025-11-24 01:00:54,238 | INFO     | sum of deviations: 1773711680373.575
[2025-11-24 02:01:54] 2025-11-24 01:00:54,238 | INFO     | mean x: 1763918690.0473988
[2025-11-24 02:01:54] 2025-11-24 01:00:54,238 | INFO     | mean y: 2868612.5225433526
[2025-11-24 02:01:54] 2025-11-24 01:00:54,238 | INFO     | intersect: -15586679234.509295
[2025-11-24 02:01:54] 2025-11-24 01:00:54,243 | INFO     | chi2: 4.283898911960271
[2025-11-24 02:01:54] 2025-11-24 01:00:54,247 | INFO     | current chi2=4.283898911960271 (change=25.743283724863176 %)
[2025-11-24 02:01:54] 2025-11-24 01:00:54,248 | INFO     | sum of square deviations: 197230989755.0453
[2025-11-24 02:01:54] 2025-11-24 01:00:54,288 | INFO     | sum of deviations: 1759253101508.6082
[2025-11-24 02:01:54] 2025-11-24 01:00:54,289 | INFO     | mean x: 1763918537.5476744
[2025-11-24 02:01:54] 2025-11-24 01:00:54,289 | INFO     | mean y: 2867974.302325581
[2025-11-24 02:01:54] 2025-11-24 01:00:54,289 | INFO     | intersect: -15730862114.682806
[2025-11-24 02:01:54] 2025-11-24 01:00:54,290 | INFO     | chi2: 4.275743735272332
[2025-11-24 02:01:54] 2025-11-24 01:00:54,290 | INFO     | current chi2=4.275743735272332 (change=0.1903680935413736 %)
[2025-11-24 02:01:54] 2025-11-24 01:00:54,290 | INFO     | right removable region: 859
[2025-11-24 02:01:54] 2025-11-24 01:00:54,296 | INFO     | sum of square deviations: 207731162300.83063
[2025-11-24 02:01:54] 2025-11-24 01:00:54,337 | INFO     | sum of deviations: 654131586030.6254
[2025-11-24 02:01:54] 2025-11-24 01:00:54,337 | INFO     | mean x: 1763919300.0365715
[2025-11-24 02:01:54] 2025-11-24 01:00:54,337 | INFO     | mean y: 2847861.168
[2025-11-24 02:01:54] 2025-11-24 01:00:54,337 | INFO     | intersect: -5551616459.847063
[2025-11-24 02:01:54] 2025-11-24 01:00:54,338 | INFO     | chi2: 9.813677831039184
[2025-11-24 02:01:54] 2025-11-24 01:00:54,338 | INFO     | current chi2=9.813677831039184 (change=26.35113872842919 %)
[2025-11-24 02:01:54] 2025-11-24 01:00:54,344 | INFO     | sum of square deviations: 204190297648.24878
[2025-11-24 02:01:54] 2025-11-24 01:00:54,394 | INFO     | sum of deviations: 551022780400.8402
[2025-11-24 02:01:54] 2025-11-24 01:00:54,394 | INFO     | mean x: 1763919452.537931
[2025-11-24 02:01:54] 2025-11-24 01:00:54,394 | INFO     | mean y: 2852296.322988506
[2025-11-24 02:01:54] 2025-11-24 01:00:54,395 | INFO     | intersect: -4757216190.451729
[2025-11-24 02:01:54] 2025-11-24 01:00:54,400 | INFO     | time since job start (53861s) is within the limit (172800.0s)
[2025-11-24 02:01:54] 2025-11-24 01:00:54,401 | INFO     | chi2: 9.428290028802023
[2025-11-24 02:01:54] 2025-11-24 01:00:54,401 | INFO     | current chi2=9.428290028802023 (change=3.927047625491008 %)
[2025-11-24 02:01:54] 2025-11-24 01:00:54,402 | INFO     | left removable region: 20
[2025-11-24 02:01:54] 2025-11-24 01:00:54,403 | INFO     | sum of square deviations: 183132293256.3672
[2025-11-24 02:01:54] 2025-11-24 01:00:54,443 | INFO     | sum of deviations: 1221240825258.1
[2025-11-24 02:01:54] 2025-11-24 01:00:54,451 | INFO     | mean x: 1763919117.056019
[2025-11-24 02:01:54] 2025-11-24 01:00:54,451 | INFO     | mean y: 2891878.1680572107
[2025-11-24 02:01:54] 2025-11-24 01:00:54,451 | INFO     | intersect: -11760025518.30885
[2025-11-24 02:01:54] 2025-11-24 01:00:54,452 | INFO     | chi2: 0.16861182678260697
[2025-11-24 02:01:54] 2025-11-24 01:00:54,453 | INFO     | current memory leak: 6.67 B/s (using 839 data points, chi2=0.17)
[2025-11-24 02:01:54] 2025-11-24 01:00:54,454 | INFO     | could have reported an average CPU frequency of 2356 MHz (32 samples)
[2025-11-24 02:01:54] 2025-11-24 01:00:54,454 | INFO     | ..............................
[2025-11-24 02:01:54] 2025-11-24 01:00:54,454 | INFO     | . Timing measurements:
[2025-11-24 02:01:54] 2025-11-24 01:00:54,454 | INFO     | . get job = 0 s
[2025-11-24 02:01:54] 2025-11-24 01:00:54,454 | INFO     | . initial setup = 2 s
[2025-11-24 02:01:54] 2025-11-24 01:00:54,454 | INFO     | . payload setup = 34 s
[2025-11-24 02:01:54] 2025-11-24 01:00:54,454 | INFO     | . stage-in = 0 s
[2025-11-24 02:01:54] 2025-11-24 01:00:54,454 | INFO     | . payload execution = 53709 s
[2025-11-24 02:01:54] 2025-11-24 01:00:54,455 | INFO     | . stage-out = 5 s
[2025-11-24 02:01:54] 2025-11-24 01:00:54,455 | INFO     | . log creation = 1 s
[2025-11-24 02:01:54] 2025-11-24 01:00:54,455 | INFO     | ..............................
[2025-11-24 02:01:54] 2025-11-24 01:00:54,683 | INFO     | 
[2025-11-24 02:01:54] 2025-11-24 01:00:54,683 | INFO     | job summary report
[2025-11-24 02:01:54] 2025-11-24 01:00:54,683 | INFO     | --------------------------------------------------
[2025-11-24 02:01:54] 2025-11-24 01:00:54,683 | INFO     | PanDA job id: 6894292431
[2025-11-24 02:01:54] 2025-11-24 01:00:54,683 | INFO     | task id: 47533967
[2025-11-24 02:01:54] 2025-11-24 01:00:54,684 | INFO     | errors: (none)
[2025-11-24 02:01:54] 2025-11-24 01:00:54,684 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 02:01:54] 2025-11-24 01:00:54,684 | INFO     | pilot state: finished 
[2025-11-24 02:01:54] 2025-11-24 01:00:54,684 | INFO     | transexitcode: 0
[2025-11-24 02:01:54] 2025-11-24 01:00:54,684 | INFO     | exeerrorcode: 0
[2025-11-24 02:01:54] 2025-11-24 01:00:54,684 | INFO     | exeerrordiag: 
[2025-11-24 02:01:54] 2025-11-24 01:00:54,684 | INFO     | exitcode: 0
[2025-11-24 02:01:54] 2025-11-24 01:00:54,684 | INFO     | exitmsg: OK
[2025-11-24 02:01:54] 2025-11-24 01:00:54,685 | INFO     | cpuconsumptiontime: 272936 s
[2025-11-24 02:01:54] 2025-11-24 01:00:54,685 | INFO     | nevents: 1000
[2025-11-24 02:01:54] 2025-11-24 01:00:54,685 | INFO     | neventsw: 0
[2025-11-24 02:01:54] 2025-11-24 01:00:54,685 | INFO     | pid: 617431
[2025-11-24 02:01:54] 2025-11-24 01:00:54,685 | INFO     | pgrp: 617431
[2025-11-24 02:01:54] 2025-11-24 01:00:54,685 | INFO     | corecount: 8
[2025-11-24 02:01:54] 2025-11-24 01:00:54,685 | INFO     | event service: False
[2025-11-24 02:01:54] 2025-11-24 01:00:54,685 | INFO     | sizes: {0: 2297927, 1: 2298619, 2: 2298818, 13: 2298818, 23: 2298874, 30: 2299164, 34: 2299320, 53748: 2348753, 53755: 2357817, 53802: 2358007}
[2025-11-24 02:01:54] 2025-11-24 01:00:54,685 | INFO     | --------------------------------------------------
[2025-11-24 02:01:54] 2025-11-24 01:00:54,685 | INFO     | 
[2025-11-24 02:01:54] 2025-11-24 01:00:54,686 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/9
[2025-11-24 02:01:54] 2025-11-24 01:00:54,774 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 02:01:54] 2025-11-24 01:00:54,774 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 02:01:54] 2025-11-24 01:00:54,774 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 02:01:54] 2025-11-24 01:00:54,774 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 02:01:54] 2025-11-24 01:00:54,774 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 02:01:54] 2025-11-24 01:00:54,775 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 02:01:54] 2025-11-24 01:00:54,775 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 02:01:54] 2025-11-24 01:00:54,775 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 02:01:54] 2025-11-24 01:00:54,775 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 02:01:54] 2025-11-24 01:00:54,775 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 02:01:54] 2025-11-24 01:00:54,775 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 02:01:54] 2025-11-24 01:00:54,775 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 02:01:54] 2025-11-24 01:00:54,775 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 02:01:54] 2025-11-24 01:00:54,775 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 02:01:54] 2025-11-24 01:00:54,775 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 02:01:54] 2025-11-24 01:00:54,775 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 02:01:54] 2025-11-24 01:00:54,776 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 02:01:54] 2025-11-24 01:00:54,776 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 02:01:54] 2025-11-24 01:00:54,776 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 02:01:54] 2025-11-24 01:00:54,776 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 02:01:54] 2025-11-24 01:00:54,776 | INFO     | job 6894292431 has completed (purged errors)
[2025-11-24 02:01:54] 2025-11-24 01:00:54,776 | INFO     | overall cleanup function is called
[2025-11-24 02:01:54] 2025-11-24 01:00:55,827 | INFO     | --- collectZombieJob: --- 10, [617431]
[2025-11-24 02:01:54] 2025-11-24 01:00:55,827 | INFO     | zombie collector waiting for pid 617431
[2025-11-24 02:01:54] 2025-11-24 01:00:55,827 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 02:01:54] 2025-11-24 01:00:55,827 | INFO     | collected zombie processes
[2025-11-24 02:01:54] 2025-11-24 01:00:55,827 | INFO     | will attempt to kill all subprocesses of pid=617431
[2025-11-24 02:01:54] 2025-11-24 01:00:56,731 | INFO     | process IDs to be killed: [617431] (in reverse order)
[2025-11-24 02:01:54] 2025-11-24 01:00:57,043 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 02:01:54] 2025-11-24 01:00:57,049 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 02:01:54] 2025-11-24 01:00:57,091 | INFO     | did not find any defunct processes belonging to 617431
[2025-11-24 02:01:54] 2025-11-24 01:00:57,113 | INFO     | did not find any defunct processes belonging to 617431
[2025-11-24 02:01:54] 2025-11-24 01:00:57,123 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 02:01:54] 2025-11-24 01:00:57,123 | INFO     | ready for new job
[2025-11-24 02:01:54] 2025-11-24 01:00:57,123 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 02:01:54] 2025-11-24 01:00:57,137 | INFO     | ***************************************
[2025-11-24 02:01:54] 2025-11-24 01:00:57,137 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 02:01:54] 2025-11-24 01:00:57,137 | INFO     | ***************************************
[2025-11-24 02:01:54] 2025-11-24 01:00:57,137 | INFO     | 
[2025-11-24 02:01:54] 2025-11-24 01:00:57,162 | INFO     | architecture information:
[2025-11-24 02:01:54] 2025-11-24 01:00:57,167 | INFO     | executing command: cat /etc/os-release
[2025-11-24 02:01:54] 2025-11-24 01:00:57,216 | INFO     | cat /etc/os-release:
[2025-11-24 02:01:54] NAME="CentOS Linux"
[2025-11-24 02:01:54] VERSION="7 (Core)"
[2025-11-24 02:01:54] ID="centos"
[2025-11-24 02:01:54] ID_LIKE="rhel fedora"
[2025-11-24 02:01:54] VERSION_ID="7"
[2025-11-24 02:01:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 02:01:54] ANSI_COLOR="0;31"
[2025-11-24 02:01:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 02:01:54] HOME_URL="https://www.centos.org/"
[2025-11-24 02:01:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 02:01:54] 
[2025-11-24 02:01:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 02:01:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 02:01:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 02:01:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 02:01:54] 
[2025-11-24 02:01:54] 2025-11-24 01:00:57,217 | INFO     | ***************************************
[2025-11-24 02:01:54] 2025-11-24 01:00:57,719 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/9
[2025-11-24 02:01:54] 2025-11-24 01:00:57,827 | INFO     | sufficient remaining disk space (72318189568 B)
[2025-11-24 02:01:54] 2025-11-24 01:00:57,828 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 02:01:54] 2025-11-24 01:00:57,828 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 02:01:54] 2025-11-24 01:00:57,828 | INFO     | update_server=False
[2025-11-24 02:01:54] 2025-11-24 01:00:57,828 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 02:01:54] 2025-11-24 01:00:57,871 | INFO     | all payload control threads have been joined
[2025-11-24 02:01:54] 2025-11-24 01:00:58,043 | INFO     | all job control threads have been joined
[2025-11-24 02:01:54] 2025-11-24 01:00:58,683 | INFO     | all data control threads have been joined
[2025-11-24 02:01:54] 2025-11-24 01:00:58,759 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:01:54] 2025-11-24 01:00:58,759 | INFO     | aborting loop
[2025-11-24 02:01:54] 2025-11-24 01:00:58,835 | INFO     | [job] retrieve thread has finished
[2025-11-24 02:01:54] 2025-11-24 01:00:58,879 | INFO     | [payload] control thread has finished
[2025-11-24 02:01:54] 2025-11-24 01:00:58,911 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 02:01:54] 2025-11-24 01:00:59,051 | INFO     | [job] control thread has finished
[2025-11-24 02:01:54] 2025-11-24 01:00:59,163 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 02:01:54] 2025-11-24 01:00:59,207 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 02:01:54] 2025-11-24 01:00:59,447 | INFO     | [payload] failed_post thread has finished
[2025-11-24 02:01:54] 2025-11-24 01:00:59,459 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 02:01:54] 2025-11-24 01:00:59,655 | INFO     | [job] validate thread has finished
[2025-11-24 02:01:54] 2025-11-24 01:00:59,673 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 02:01:54] 2025-11-24 01:00:59,691 | INFO     | [data] control thread has finished
[2025-11-24 02:01:54] 2025-11-24 01:00:59,695 | INFO     | [data] copytool_in thread has finished
[2025-11-24 02:01:54] 2025-11-24 01:00:59,699 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:01:54] 2025-11-24 01:00:59,763 | INFO     | [job] job monitor thread has finished
[2025-11-24 02:01:54] 2025-11-24 01:00:59,923 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 02:01:54] 2025-11-24 01:01:00,259 | INFO     | [payload] validate_post thread has finished
[2025-11-24 02:01:54] 2025-11-24 01:01:00,703 | INFO     | [job] queue monitor thread has finished
[2025-11-24 02:01:54] 2025-11-24 01:01:00,919 | INFO     | [data] copytool_out thread has finished
[2025-11-24 02:01:54] 2025-11-24 01:01:03,687 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 02:01:54] 2025-11-24 01:01:28,310 | INFO     | PID=548270 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 02:01:54] 2025-11-24 01:01:28,310 | INFO     | .. there are 25 such processes running
[2025-11-24 02:01:54] 2025-11-24 01:01:28,310 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 02:01:54] 2025-11-24 01:01:28,311 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 02:01:54] 2025-11-24 01:01:28,311 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 02:01:54] 2025-11-24 01:01:45,295 | INFO     | [monitor] cgroup control has ended
[2025-11-24 02:01:54] 2025-11-24 01:01:47,215 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140057879582528)>', '<ExcThread(monitor, started 140056920577792)>']
[2025-11-24 02:01:54] 2025-11-24 01:01:47,419 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 02:01:54] 2025-11-24 01:01:47,419 | INFO     | [monitor] control thread has ended
[2025-11-24 02:01:54] 2025-11-24 01:01:52,243 | INFO     | all workflow threads have been joined
[2025-11-24 02:01:54] 2025-11-24 01:01:52,243 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 02:01:54] 2025-11-24 01:01:52,243 | INFO     | traces error code: 0
[2025-11-24 02:01:54] 2025-11-24 01:01:52,244 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 02:01:54] 2025-11-24 01:01:52,527 [wrapper] ==== pilot stdout END ====
[2025-11-24 02:01:54] 2025-11-24 01:01:52,564 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 02:01:54] 2025-11-24 01:01:52,631 [wrapper] pilotpid: 548270
[2025-11-24 02:01:54] 2025-11-24 01:01:52,671 [wrapper] Pilot exit status: 0
[2025-11-24 02:01:54] 2025-11-24 01:01:52,799 [wrapper] pandaids: 6894292431
[2025-11-24 02:01:54] 2025-11-24 01:01:53,160 [wrapper] cleanup supervisor_pilot 2877688 548272
[2025-11-24 02:01:54] 2025-11-24 01:01:53,208 [wrapper] Test setup, not cleaning
[2025-11-24 02:01:54] 2025-11-24 01:01:53,256 [wrapper] apfmon messages muted
[2025-11-24 02:01:54] 2025-11-24 01:01:53,311 [wrapper] ==== wrapper stdout END ====
[2025-11-24 02:01:54] 2025-11-24 01:01:53,351 [wrapper] ==== wrapper stderr END ====
[2025-11-24 02:01:54]  *** Error codes and diagnostics ***
[2025-11-24 02:01:54]     "exeErrorCode": 0,
[2025-11-24 02:01:54]     "exeErrorDiag": "",
[2025-11-24 02:01:54]     "pilotErrorCode": 0,
[2025-11-24 02:01:54]     "pilotErrorDiag": "",
[2025-11-24 02:01:54]  *** Listing of results directory ***
[2025-11-24 02:01:54] insgesamt 1320116
[2025-11-24 02:01:54] -rw-r--r-- 1 boinc boinc    576529 Nov 21 13:22 pilot3.tar.gz
[2025-11-24 02:01:54] -rw-r--r-- 1 boinc boinc      5112 Nov 21 13:27 queuedata.json
[2025-11-24 02:01:54] -rwx------ 1 boinc boinc     36292 Nov 21 13:28 runpilot2-wrapper.sh
[2025-11-24 02:01:54] -rw-r--r-- 1 boinc boinc       100 Nov 23 11:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 02:01:54] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 11:02 run_atlas
[2025-11-24 02:01:54] -rw-r--r-- 1 boinc boinc       105 Nov 23 11:02 job.xml
[2025-11-24 02:01:54] -rw-r--r-- 2 boinc boinc     15847 Nov 23 11:02 start_atlas.sh
[2025-11-24 02:01:54] drwxrwx--x 2 boinc boinc      4096 Nov 23 11:02 shared
[2025-11-24 02:01:54] -rw-r--r-- 2 boinc boinc    590106 Nov 23 11:02 input.tar.gz
[2025-11-24 02:01:54] -rw-r--r-- 1 boinc boinc      6665 Nov 23 11:02 init_data.xml
[2025-11-24 02:01:54] -rw-r--r-- 2 boinc boinc 409492696 Nov 23 11:02 EVNT.47493127._002454.pool.root.1
[2025-11-24 02:01:54] -rw-r--r-- 1 boinc boinc         0 Nov 23 11:02 boinc_lockfile
[2025-11-24 02:01:54] -rw-r--r-- 1 boinc boinc      2784 Nov 23 11:02 pandaJob.out
[2025-11-24 02:01:54] -rw------- 1 boinc boinc        46 Nov 23 11:02 setup.sh.local
[2025-11-24 02:01:54] -rw------- 1 boinc boinc    989784 Nov 23 11:03 agis_schedconf.cvmfs.json
[2025-11-24 02:01:54] drwx------ 5 boinc boinc      4096 Nov 23 11:03 pilot3
[2025-11-24 02:01:54] -rw-r--r-- 1 boinc boinc       533 Nov 24 01:43 boinc_task_state.xml
[2025-11-24 02:01:54] -rw------- 1 boinc boinc 920372316 Nov 24 01:59 HITS.47533967._004256.pool.root.1
[2025-11-24 02:01:54] -rw------- 1 boinc boinc      1053 Nov 24 01:59 memory_monitor_summary.json
[2025-11-24 02:01:54] -rw------- 1 boinc boinc   1526164 Nov 24 02:00 agis_ddmendpoints.agis.ALL.json
[2025-11-24 02:01:54] -rw------- 1 boinc boinc   2046031 Nov 24 02:00 log.47533967._004256.job.log.tgz.1
[2025-11-24 02:01:54] -rw------- 1 boinc boinc        95 Nov 24 02:00 pilot_heartbeat.json
[2025-11-24 02:01:54] -rw------- 1 boinc boinc      8567 Nov 24 02:00 heartbeat.json
[2025-11-24 02:01:54] -rw-r--r-- 1 boinc boinc        29 Nov 24 02:01 wrapper_checkpoint.txt
[2025-11-24 02:01:54] -rw-r--r-- 1 boinc boinc      8192 Nov 24 02:01 boinc_mmap_file
[2025-11-24 02:01:54] -rw------- 1 boinc boinc      4830 Nov 24 02:01 pilotlog.txt
[2025-11-24 02:01:54] -rw------- 1 boinc boinc   6956347 Nov 24 02:01 log.47533967._004256.job.log.1
[2025-11-24 02:01:54] -rw------- 1 boinc boinc       353 Nov 24 02:01 output.list
[2025-11-24 02:01:54] -rw-r--r-- 1 boinc boinc       620 Nov 24 02:01 runtime_log
[2025-11-24 02:01:54] -rw------- 1 boinc boinc   9021440 Nov 24 02:01 result.tar.gz
[2025-11-24 02:01:54] -rw-r--r-- 1 boinc boinc      9455 Nov 24 02:01 runtime_log.err
[2025-11-24 02:01:54] -rw------- 1 boinc boinc       673 Nov 24 02:01 m5ANDmcQfg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmcQJKDmKNRH2m.diag
[2025-11-24 02:01:54] -rw-r--r-- 1 boinc boinc     20886 Nov 24 02:01 stderr.txt
[2025-11-24 02:01:54] HITS file was successfully produced:
[2025-11-24 02:01:54] -rw------- 1 boinc boinc 920372316 Nov 24 01:59 shared/HITS.pool.root.1
[2025-11-24 02:01:54]  *** Contents of shared directory: ***
[2025-11-24 02:01:54] insgesamt 1308116
[2025-11-24 02:01:54] -rw-r--r-- 2 boinc boinc     15847 Nov 23 11:02 start_atlas.sh
[2025-11-24 02:01:54] -rw-r--r-- 2 boinc boinc    590106 Nov 23 11:02 input.tar.gz
[2025-11-24 02:01:54] -rw-r--r-- 2 boinc boinc 409492696 Nov 23 11:02 ATLAS.root_0
[2025-11-24 02:01:54] -rw------- 1 boinc boinc 920372316 Nov 24 01:59 HITS.pool.root.1
[2025-11-24 02:01:54] -rw------- 1 boinc boinc   9021440 Nov 24 02:01 result.tar.gz
02:01:56 (519642): run_atlas exited; CPU time 275612.054164
02:01:56 (519642): called boinc_finish(0)

</stderr_txt>
]]>

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