Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:24:01 (26497): wrapper (7.7.26015): starting
16:24:01 (26497): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 16:24:01] Arguments: --nthreads 8
[2025-11-22 16:24:01] Threads: 8
[2025-11-22 16:24:01] Checking for CVMFS
[2025-11-22 16:24:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 16:24:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 16:24:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 16:24:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 16:24:01] 2.11.2.0 5524 112460 137040 153185 0 81 14889838 18432001 1885 130560 0 81502823 99.974 4801419 32636 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 16:24:01] CVMFS is ok
[2025-11-22 16:24:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 16:24:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 16:24:01] Further information can be found at the LHC@home message board.
[2025-11-22 16:24:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 16:24:01] Checking for apptainer binary...
[2025-11-22 16:24:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 16:24:01] Running /usr/bin/apptainer --version
[2025-11-22 16:24:01] apptainer version 1.3.2-1.el7
[2025-11-22 16:24:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 16:24:02] c-206-5.aglt2.org
[2025-11-22 16:24:02] apptainer works
[2025-11-22 16:24:02] Set ATHENA_PROC_NUMBER=8
[2025-11-22 16:24:02] Set ATHENA_CORE_NUMBER=8
[2025-11-22 16:24:02] Starting ATLAS job with PandaID=6895331998
[2025-11-22 16:24:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 12:10:16]  *** The last 200 lines of the pilot log: ***
[2025-11-23 12:10:16] 2025-11-23 17:09:49,583 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2455.75
[2025-11-23 12:10:16] 2025-11-23 17:09:49,587 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895331998/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 12:10:16] 2025-11-23 17:09:49,588 | INFO     | extracted standard info from prmon json
[2025-11-23 12:10:16] 2025-11-23 17:09:49,588 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 12:10:16] 2025-11-23 17:09:49,588 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 12:10:16] 2025-11-23 17:09:49,617 | INFO     | fitting pss+swap vs Time
[2025-11-23 12:10:16] 2025-11-23 17:09:49,619 | INFO     | sum of square deviations: 491554506101.0096
[2025-11-23 12:10:16] 2025-11-23 17:09:49,654 | INFO     | sum of deviations: 2114543891169.955
[2025-11-23 12:10:16] 2025-11-23 17:09:49,654 | INFO     | mean x: 1763882213.1603773
[2025-11-23 12:10:16] 2025-11-23 17:09:49,658 | INFO     | mean y: 2874060.834476844
[2025-11-23 12:10:16] 2025-11-23 17:09:49,659 | INFO     | intersect: -7584903718.208359
[2025-11-23 12:10:16] 2025-11-23 17:09:49,660 | INFO     | chi2: 5.541823659695826
[2025-11-23 12:10:16] 2025-11-23 17:09:49,662 | INFO     | sum of square deviations: 485258185681.3204
[2025-11-23 12:10:16] 2025-11-23 17:09:49,710 | INFO     | sum of deviations: 2478701690422.0635
[2025-11-23 12:10:16] 2025-11-23 17:09:49,710 | INFO     | mean x: 1763882060.6632214
[2025-11-23 12:10:16] 2025-11-23 17:09:49,710 | INFO     | mean y: 2882876.2661498706
[2025-11-23 12:10:16] 2025-11-23 17:09:49,710 | INFO     | intersect: -9007037150.806526
[2025-11-23 12:10:16] 2025-11-23 17:09:49,712 | INFO     | chi2: 2.715117809198368
[2025-11-23 12:10:16] 2025-11-23 17:09:49,712 | INFO     | current chi2=2.715117809198368 (change=51.00678087351136 %)
[2025-11-23 12:10:16] 2025-11-23 17:09:49,714 | INFO     | sum of square deviations: 479015866274.1106
[2025-11-23 12:10:16] 2025-11-23 17:09:49,759 | INFO     | sum of deviations: 2590615775248.143
[2025-11-23 12:10:16] 2025-11-23 17:09:49,759 | INFO     | mean x: 1763881908.16609
[2025-11-23 12:10:16] 2025-11-23 17:09:49,760 | INFO     | monitor loop #5076: job 0:6895331998 is in state 'finished'
[2025-11-23 12:10:16] 2025-11-23 17:09:49,760 | INFO     | mean y: 2885606.4679930797
[2025-11-23 12:10:16] 2025-11-23 17:09:49,760 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 12:10:16] 2025-11-23 17:09:49,760 | INFO     | intersect: -9536548509.801987
[2025-11-23 12:10:16] 2025-11-23 17:09:49,762 | INFO     | chi2: 2.2879890465345967
[2025-11-23 12:10:16] 2025-11-23 17:09:49,763 | INFO     | current chi2=2.2879890465345967 (change=15.731500166097035 %)
[2025-11-23 12:10:16] 2025-11-23 17:09:49,763 | INFO     | right removable region: 1155
[2025-11-23 12:10:16] 2025-11-23 17:09:49,764 | INFO     | sum of square deviations: 485257786863.64526
[2025-11-23 12:10:16] 2025-11-23 17:09:49,804 | INFO     | sum of deviations: 1813292036291.342
[2025-11-23 12:10:16] 2025-11-23 17:09:49,805 | INFO     | mean x: 1763882365.66236
[2025-11-23 12:10:16] 2025-11-23 17:09:49,805 | INFO     | mean y: 2881348.801894918
[2025-11-23 12:10:16] 2025-11-23 17:09:49,805 | INFO     | intersect: -6588324260.246955
[2025-11-23 12:10:16] 2025-11-23 17:09:49,807 | INFO     | chi2: 3.526823299114289
[2025-11-23 12:10:16] 2025-11-23 17:09:49,807 | INFO     | current chi2=3.526823299114289 (change=36.35987870267482 %)
[2025-11-23 12:10:16] 2025-11-23 17:09:49,808 | INFO     | sum of square deviations: 479015210403.42554
[2025-11-23 12:10:16] 2025-11-23 17:09:49,842 | INFO     | time since job start (71136s) is within the limit (172800.0s)
[2025-11-23 12:10:16] 2025-11-23 17:09:49,851 | INFO     | sum of deviations: 1736567674723.5542
[2025-11-23 12:10:16] 2025-11-23 17:09:49,852 | INFO     | mean x: 1763882518.1626298
[2025-11-23 12:10:16] 2025-11-23 17:09:49,852 | INFO     | mean y: 2883222.7257785466
[2025-11-23 12:10:16] 2025-11-23 17:09:49,852 | INFO     | intersect: -6391697359.530615
[2025-11-23 12:10:16] 2025-11-23 17:09:49,853 | INFO     | chi2: 3.4715101278044695
[2025-11-23 12:10:16] 2025-11-23 17:09:49,853 | INFO     | current chi2=3.4715101278044695 (change=1.568356751065774 %)
[2025-11-23 12:10:16] 2025-11-23 17:09:49,853 | INFO     | left removable region: 20
[2025-11-23 12:10:16] 2025-11-23 17:09:49,855 | INFO     | sum of square deviations: 453381531085.7762
[2025-11-23 12:10:16] 2025-11-23 17:09:49,885 | INFO     | sum of deviations: 2116223128435.0803
[2025-11-23 12:10:16] 2025-11-23 17:09:49,886 | INFO     | mean x: 1763882487.6678414
[2025-11-23 12:10:16] 2025-11-23 17:09:49,886 | INFO     | mean y: 2897783.6898678415
[2025-11-23 12:10:16] 2025-11-23 17:09:49,886 | INFO     | intersect: -8230275956.989218
[2025-11-23 12:10:16] 2025-11-23 17:09:49,887 | INFO     | chi2: 0.16188391591113546
[2025-11-23 12:10:16] 2025-11-23 17:09:49,887 | INFO     | current memory leak: 4.67 B/s (using 1135 data points, chi2=0.16)
[2025-11-23 12:10:16] 2025-11-23 17:09:49,888 | INFO     | could have reported an average CPU frequency of 2627 MHz (42 samples)
[2025-11-23 12:10:16] 2025-11-23 17:09:49,888 | INFO     | ..............................
[2025-11-23 12:10:16] 2025-11-23 17:09:49,888 | INFO     | . Timing measurements:
[2025-11-23 12:10:16] 2025-11-23 17:09:49,889 | INFO     | . get job = 0 s
[2025-11-23 12:10:16] 2025-11-23 17:09:49,889 | INFO     | . initial setup = 2 s
[2025-11-23 12:10:16] 2025-11-23 17:09:49,889 | INFO     | . payload setup = 5 s
[2025-11-23 12:10:16] 2025-11-23 17:09:49,889 | INFO     | . stage-in = 0 s
[2025-11-23 12:10:16] 2025-11-23 17:09:49,889 | INFO     | . payload execution = 71099 s
[2025-11-23 12:10:16] 2025-11-23 17:09:49,889 | INFO     | . stage-out = 4 s
[2025-11-23 12:10:16] 2025-11-23 17:09:49,889 | INFO     | . log creation = 0 s
[2025-11-23 12:10:16] 2025-11-23 17:09:49,889 | INFO     | ..............................
[2025-11-23 12:10:16] 2025-11-23 17:09:49,984 | INFO     | 
[2025-11-23 12:10:16] 2025-11-23 17:09:49,984 | INFO     | job summary report
[2025-11-23 12:10:16] 2025-11-23 17:09:49,984 | INFO     | --------------------------------------------------
[2025-11-23 12:10:16] 2025-11-23 17:09:49,984 | INFO     | PanDA job id: 6895331998
[2025-11-23 12:10:16] 2025-11-23 17:09:49,985 | INFO     | task id: 47556137
[2025-11-23 12:10:16] 2025-11-23 17:09:49,985 | INFO     | errors: (none)
[2025-11-23 12:10:16] 2025-11-23 17:09:49,985 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 12:10:16] 2025-11-23 17:09:49,985 | INFO     | pilot state: finished 
[2025-11-23 12:10:16] 2025-11-23 17:09:49,985 | INFO     | transexitcode: 0
[2025-11-23 12:10:16] 2025-11-23 17:09:49,985 | INFO     | exeerrorcode: 0
[2025-11-23 12:10:16] 2025-11-23 17:09:49,985 | INFO     | exeerrordiag: 
[2025-11-23 12:10:16] 2025-11-23 17:09:49,985 | INFO     | exitcode: 0
[2025-11-23 12:10:16] 2025-11-23 17:09:49,985 | INFO     | exitmsg: OK
[2025-11-23 12:10:16] 2025-11-23 17:09:49,985 | INFO     | cpuconsumptiontime: 548117 s
[2025-11-23 12:10:16] 2025-11-23 17:09:49,985 | INFO     | nevents: 1000
[2025-11-23 12:10:16] 2025-11-23 17:09:49,986 | INFO     | neventsw: 0
[2025-11-23 12:10:16] 2025-11-23 17:09:49,986 | INFO     | pid: 4384
[2025-11-23 12:10:16] 2025-11-23 17:09:49,986 | INFO     | pgrp: 4384
[2025-11-23 12:10:16] 2025-11-23 17:09:49,986 | INFO     | corecount: 8
[2025-11-23 12:10:16] 2025-11-23 17:09:49,986 | INFO     | event service: False
[2025-11-23 12:10:16] 2025-11-23 17:09:49,986 | INFO     | sizes: {0: 2298642, 1: 2298784, 4: 2299046, 12: 2299074, 71108: 2355955, 71109: 2355954, 71114: 2365132, 71115: 2365188, 71121: 2365434}
[2025-11-23 12:10:16] 2025-11-23 17:09:49,986 | INFO     | --------------------------------------------------
[2025-11-23 12:10:16] 2025-11-23 17:09:49,986 | INFO     | 
[2025-11-23 12:10:16] 2025-11-23 17:09:49,986 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-23 12:10:16] 2025-11-23 17:09:50,009 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 12:10:16] 2025-11-23 17:09:50,010 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 12:10:16] 2025-11-23 17:09:50,010 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 12:10:16] 2025-11-23 17:09:50,010 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 12:10:16] 2025-11-23 17:09:50,010 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 12:10:16] 2025-11-23 17:09:50,010 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 12:10:16] 2025-11-23 17:09:50,010 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 12:10:16] 2025-11-23 17:09:50,011 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 12:10:16] 2025-11-23 17:09:50,011 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 12:10:16] 2025-11-23 17:09:50,011 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 12:10:16] 2025-11-23 17:09:50,011 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 12:10:16] 2025-11-23 17:09:50,011 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 12:10:16] 2025-11-23 17:09:50,011 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 12:10:16] 2025-11-23 17:09:50,012 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 12:10:16] 2025-11-23 17:09:50,012 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 12:10:16] 2025-11-23 17:09:50,012 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 12:10:16] 2025-11-23 17:09:50,012 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 12:10:16] 2025-11-23 17:09:50,012 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 12:10:16] 2025-11-23 17:09:50,013 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 12:10:16] 2025-11-23 17:09:50,013 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 12:10:16] 2025-11-23 17:09:50,013 | INFO     | job 6895331998 has completed (purged errors)
[2025-11-23 12:10:16] 2025-11-23 17:09:50,013 | INFO     | overall cleanup function is called
[2025-11-23 12:10:16] 2025-11-23 17:09:51,030 | INFO     | --- collectZombieJob: --- 10, [4384]
[2025-11-23 12:10:16] 2025-11-23 17:09:51,030 | INFO     | zombie collector waiting for pid 4384
[2025-11-23 12:10:16] 2025-11-23 17:09:51,030 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 12:10:16] 2025-11-23 17:09:51,030 | INFO     | collected zombie processes
[2025-11-23 12:10:16] 2025-11-23 17:09:51,030 | INFO     | will attempt to kill all subprocesses of pid=4384
[2025-11-23 12:10:16] 2025-11-23 17:09:51,180 | INFO     | process IDs to be killed: [4384] (in reverse order)
[2025-11-23 12:10:16] 2025-11-23 17:09:51,244 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 12:10:16] 2025-11-23 17:09:51,245 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 12:10:16] 2025-11-23 17:09:51,250 | INFO     | did not find any defunct processes belonging to 4384
[2025-11-23 12:10:16] 2025-11-23 17:09:51,255 | INFO     | did not find any defunct processes belonging to 4384
[2025-11-23 12:10:16] 2025-11-23 17:09:51,257 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 12:10:16] 2025-11-23 17:09:51,257 | INFO     | ready for new job
[2025-11-23 12:10:16] 2025-11-23 17:09:51,257 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 12:10:16] 2025-11-23 17:09:51,262 | INFO     | ***************************************
[2025-11-23 12:10:16] 2025-11-23 17:09:51,263 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 12:10:16] 2025-11-23 17:09:51,263 | INFO     | ***************************************
[2025-11-23 12:10:16] 2025-11-23 17:09:51,263 | INFO     | 
[2025-11-23 12:10:16] 2025-11-23 17:09:51,264 | INFO     | architecture information:
[2025-11-23 12:10:16] 2025-11-23 17:09:51,265 | INFO     | executing command: cat /etc/os-release
[2025-11-23 12:10:16] 2025-11-23 17:09:51,278 | INFO     | cat /etc/os-release:
[2025-11-23 12:10:16] NAME="CentOS Linux"
[2025-11-23 12:10:16] VERSION="7 (Core)"
[2025-11-23 12:10:16] ID="centos"
[2025-11-23 12:10:16] ID_LIKE="rhel fedora"
[2025-11-23 12:10:16] VERSION_ID="7"
[2025-11-23 12:10:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 12:10:16] ANSI_COLOR="0;31"
[2025-11-23 12:10:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 12:10:16] HOME_URL="https://www.centos.org/"
[2025-11-23 12:10:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 12:10:16] 
[2025-11-23 12:10:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 12:10:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 12:10:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 12:10:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 12:10:16] 
[2025-11-23 12:10:16] 2025-11-23 17:09:51,278 | INFO     | ***************************************
[2025-11-23 12:10:16] 2025-11-23 17:09:51,784 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-23 12:10:16] 2025-11-23 17:09:51,802 | INFO     | sufficient remaining disk space (26289897472 B)
[2025-11-23 12:10:16] 2025-11-23 17:09:51,803 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 12:10:16] 2025-11-23 17:09:51,803 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 12:10:16] 2025-11-23 17:09:51,803 | INFO     | update_server=False
[2025-11-23 12:10:16] 2025-11-23 17:09:51,803 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 12:10:16] 2025-11-23 17:09:51,804 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-23 12:10:16] 2025-11-23 17:09:51,804 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 12:10:16] 2025-11-23 17:09:51,804 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 12:10:16] 2025-11-23 17:09:51,804 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 12:10:16] 2025-11-23 17:09:51,804 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 12:10:16] 2025-11-23 17:09:51,888 | INFO     | all data control threads have been joined
[2025-11-23 12:10:16] 2025-11-23 17:09:52,074 | INFO     | all payload control threads have been joined
[2025-11-23 12:10:16] 2025-11-23 17:09:52,264 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 12:10:16] 2025-11-23 17:09:52,264 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 12:10:16] 2025-11-23 17:09:52,264 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 12:10:16] 2025-11-23 17:09:52,264 | INFO     | will abort loop
[2025-11-23 12:10:16] 2025-11-23 17:09:52,809 | INFO     | [job] retrieve thread has finished
[2025-11-23 12:10:16] 2025-11-23 17:09:52,810 | INFO     | [job] queue monitor thread has finished
[2025-11-23 12:10:16] 2025-11-23 17:09:52,895 | INFO     | [data] control thread has finished
[2025-11-23 12:10:16] 2025-11-23 17:09:52,922 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 12:10:16] 2025-11-23 17:09:52,939 | INFO     | [payload] validate_post thread has finished
[2025-11-23 12:10:16] 2025-11-23 17:09:53,079 | INFO     | [payload] control thread has finished
[2025-11-23 12:10:16] 2025-11-23 17:09:53,128 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 12:10:16] 2025-11-23 17:09:53,191 | INFO     | all job control threads have been joined
[2025-11-23 12:10:16] 2025-11-23 17:09:53,270 | INFO     | [job] job monitor thread has finished
[2025-11-23 12:10:16] 2025-11-23 17:09:53,274 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 12:10:16] 2025-11-23 17:09:53,317 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 12:10:16] 2025-11-23 17:09:53,350 | INFO     | [data] copytool_in thread has finished
[2025-11-23 12:10:16] 2025-11-23 17:09:53,552 | INFO     | [payload] failed_post thread has finished
[2025-11-23 12:10:16] 2025-11-23 17:09:53,629 | INFO     | [job] validate thread has finished
[2025-11-23 12:10:16] 2025-11-23 17:09:54,088 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 12:10:16] 2025-11-23 17:09:54,196 | INFO     | [job] control thread has finished
[2025-11-23 12:10:16] 2025-11-23 17:09:54,668 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 12:10:16] 2025-11-23 17:09:55,280 | INFO     | [data] copytool_out thread has finished
[2025-11-23 12:10:16] 2025-11-23 17:09:58,680 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 12:10:16] 2025-11-23 17:10:11,066 | INFO     | [monitor] cgroup control has ended
[2025-11-23 12:10:16] 2025-11-23 17:10:11,225 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140318810007360)>', '<ExcThread(monitor, started 140318385104640)>']
[2025-11-23 12:10:16] 2025-11-23 17:10:11,907 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 12:10:16] 2025-11-23 17:10:11,907 | INFO     | [monitor] control thread has ended
[2025-11-23 12:10:16] 2025-11-23 17:10:16,230 | INFO     | all workflow threads have been joined
[2025-11-23 12:10:16] 2025-11-23 17:10:16,231 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 12:10:16] 2025-11-23 17:10:16,231 | INFO     | traces error code: 0
[2025-11-23 12:10:16] 2025-11-23 17:10:16,231 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 12:10:16] 2025-11-23 17:10:16,361 [wrapper] ==== pilot stdout END ====
[2025-11-23 12:10:16] 2025-11-23 17:10:16,363 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 12:10:16] 2025-11-23 17:10:16,366 [wrapper] pilotpid: 30244
[2025-11-23 12:10:16] 2025-11-23 17:10:16,368 [wrapper] Pilot exit status: 0
[2025-11-23 12:10:16] 2025-11-23 17:10:16,378 [wrapper] pandaids: 6895331998
[2025-11-23 12:10:16] 2025-11-23 17:10:16,407 [wrapper] cleanup supervisor_pilot 25631 30245
[2025-11-23 12:10:16] 2025-11-23 17:10:16,410 [wrapper] Test setup, not cleaning
[2025-11-23 12:10:16] 2025-11-23 17:10:16,412 [wrapper] apfmon messages muted
[2025-11-23 12:10:16] 2025-11-23 17:10:16,415 [wrapper] ==== wrapper stdout END ====
[2025-11-23 12:10:16] 2025-11-23 17:10:16,417 [wrapper] ==== wrapper stderr END ====
[2025-11-23 12:10:16]  *** Error codes and diagnostics ***
[2025-11-23 12:10:16]     "exeErrorCode": 0,
[2025-11-23 12:10:16]     "exeErrorDiag": "",
[2025-11-23 12:10:16]     "pilotErrorCode": 0,
[2025-11-23 12:10:16]     "pilotErrorDiag": "",
[2025-11-23 12:10:16]  *** Listing of results directory ***
[2025-11-23 12:10:16] total 1334288
[2025-11-23 12:10:16] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 18:51 pilot3.tar.gz
[2025-11-23 12:10:16] -rwx------ 1 boincer umatlas     36292 Nov 21 19:07 runpilot2-wrapper.sh
[2025-11-23 12:10:16] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 19:07 queuedata.json
[2025-11-23 12:10:16] -rw-r--r-- 1 boincer umatlas       100 Nov 22 16:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 12:10:16] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 16:23 run_atlas
[2025-11-23 12:10:16] -rw-r--r-- 1 boincer umatlas       105 Nov 22 16:23 job.xml
[2025-11-23 12:10:16] -rw-r--r-- 2 boincer umatlas 410505383 Nov 22 16:24 EVNT.47483658._000186.pool.root.1
[2025-11-23 12:10:16] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 16:24 start_atlas.sh
[2025-11-23 12:10:16] drwxrwx--x 2 boincer umatlas      4096 Nov 22 16:24 shared
[2025-11-23 12:10:16] -rw-r--r-- 2 boincer umatlas    590097 Nov 22 16:24 input.tar.gz
[2025-11-23 12:10:16] -rw-r--r-- 1 boincer umatlas         0 Nov 22 16:24 boinc_lockfile
[2025-11-23 12:10:16] -rw-r--r-- 1 boincer umatlas      2785 Nov 22 16:24 pandaJob.out
[2025-11-23 12:10:16] -rw------- 1 boincer umatlas        57 Nov 22 16:24 setup.sh.local
[2025-11-23 12:10:16] -rw------- 1 boincer umatlas    989768 Nov 22 16:24 agis_schedconf.cvmfs.json
[2025-11-23 12:10:16] drwx------ 5 boincer umatlas      4096 Nov 22 16:24 pilot3
[2025-11-23 12:10:16] -rw-r--r-- 1 boincer umatlas       533 Nov 23 11:56 boinc_task_state.xml
[2025-11-23 12:10:16] -rw-r--r-- 1 boincer umatlas      5952 Nov 23 12:02 init_data.xml
[2025-11-23 12:10:16] -rw------- 1 boincer umatlas 927584003 Nov 23 12:09 HITS.47556137._001852.pool.root.1
[2025-11-23 12:10:16] -rw------- 1 boincer umatlas        95 Nov 23 12:09 pilot_heartbeat.json
[2025-11-23 12:10:16] -rw------- 1 boincer umatlas      1066 Nov 23 12:09 memory_monitor_summary.json
[2025-11-23 12:10:16] -rw------- 1 boincer umatlas   1526164 Nov 23 12:09 agis_ddmendpoints.agis.ALL.json
[2025-11-23 12:10:16] -rw------- 1 boincer umatlas   2324240 Nov 23 12:09 log.47556137._001852.job.log.tgz.1
[2025-11-23 12:10:16] -rw------- 1 boincer umatlas      8659 Nov 23 12:09 heartbeat.json
[2025-11-23 12:10:16] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 12:10 boinc_mmap_file
[2025-11-23 12:10:16] -rw-r--r-- 1 boincer umatlas        29 Nov 23 12:10 wrapper_checkpoint.txt
[2025-11-23 12:10:16] -rw------- 1 boincer umatlas      4738 Nov 23 12:10 pilotlog.txt
[2025-11-23 12:10:16] -rw------- 1 boincer umatlas   9823968 Nov 23 12:10 log.47556137._001852.job.log.1
[2025-11-23 12:10:16] -rw------- 1 boincer umatlas       353 Nov 23 12:10 output.list
[2025-11-23 12:10:16] -rw-r--r-- 1 boincer umatlas       620 Nov 23 12:10 runtime_log
[2025-11-23 12:10:16] -rw------- 1 boincer umatlas  12165120 Nov 23 12:10 result.tar.gz
[2025-11-23 12:10:16] -rw-r--r-- 1 boincer umatlas      9338 Nov 23 12:10 runtime_log.err
[2025-11-23 12:10:16] -rw------- 1 boincer umatlas       667 Nov 23 12:10 Ji6LDmNLqg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZoJKDmvXV5So.diag
[2025-11-23 12:10:16] -rw-r--r-- 1 boincer umatlas     21262 Nov 23 12:10 stderr.txt
[2025-11-23 12:10:16] HITS file was successfully produced:
[2025-11-23 12:10:16] -rw------- 1 boincer umatlas 927584003 Nov 23 12:09 shared/HITS.pool.root.1
[2025-11-23 12:10:16]  *** Contents of shared directory: ***
[2025-11-23 12:10:16] total 1319216
[2025-11-23 12:10:16] -rw-r--r-- 2 boincer umatlas 410505383 Nov 22 16:24 ATLAS.root_0
[2025-11-23 12:10:16] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 16:24 start_atlas.sh
[2025-11-23 12:10:16] -rw-r--r-- 2 boincer umatlas    590097 Nov 22 16:24 input.tar.gz
[2025-11-23 12:10:16] -rw------- 1 boincer umatlas 927584003 Nov 23 12:09 HITS.pool.root.1
[2025-11-23 12:10:16] -rw------- 1 boincer umatlas  12165120 Nov 23 12:10 result.tar.gz
12:10:18 (26497): run_atlas exited; CPU time 546781.933145
12:10:18 (26497): called boinc_finish(0)

</stderr_txt>
]]>

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