Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:15:52 (1246666): wrapper (7.7.26015): starting
11:15:52 (1246666): wrapper: running run_atlas (--nthreads 4)
[2025-11-25 11:15:52] Arguments: --nthreads 4
[2025-11-25 11:15:52] Threads: 4
[2025-11-25 11:15:52] Checking for CVMFS
[2025-11-25 11:15:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 11:15:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 11:15:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 11:15:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 11:15:53] 2.9.2.0 4320 8618 91828 153279 2 71 31091264 36864001 0 130560 0 3425802 99.978 277101 7058 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 11:15:53] CVMFS is ok
[2025-11-25 11:15:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 11:15:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 11:15:53] Further information can be found at the LHC@home message board.
[2025-11-25 11:15:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 11:15:53] Checking for apptainer binary...
[2025-11-25 11:15:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 11:15:53] Running /usr/bin/apptainer --version
[2025-11-25 11:15:53] apptainer version 1.4.1-1.1
[2025-11-25 11:15:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 11:15:53] madmaxA277
[2025-11-25 11:15:53] apptainer works
[2025-11-25 11:15:53] Set ATHENA_PROC_NUMBER=4
[2025-11-25 11:15:53] Set ATHENA_CORE_NUMBER=4
[2025-11-25 11:15:53] Starting ATLAS job with PandaID=6895331918
[2025-11-25 11:15:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 18:01:38]  *** The last 200 lines of the pilot log: ***
[2025-11-25 18:01:38] 2025-11-25 17:00:39,282 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 18:01:38] 2025-11-25 17:00:39,282 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 18:01:38] 2025-11-25 17:00:39,282 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 18:01:38] 2025-11-25 17:00:39,282 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 18:01:38] 2025-11-25 17:00:39,282 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 18:01:38] 2025-11-25 17:00:39,282 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 18:01:38] 2025-11-25 17:00:39,282 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 18:01:38] 2025-11-25 17:00:39,282 | INFO     | job 6895331918 has completed (purged errors)
[2025-11-25 18:01:38] 2025-11-25 17:00:39,282 | INFO     | overall cleanup function is called
[2025-11-25 18:01:38] 2025-11-25 17:00:40,292 | INFO     | --- collectZombieJob: --- 10, [1257049]
[2025-11-25 18:01:38] 2025-11-25 17:00:40,292 | INFO     | zombie collector waiting for pid 1257049
[2025-11-25 18:01:38] 2025-11-25 17:00:40,292 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 18:01:38] 2025-11-25 17:00:40,292 | INFO     | collected zombie processes
[2025-11-25 18:01:38] 2025-11-25 17:00:40,292 | INFO     | will attempt to kill all subprocesses of pid=1257049
[2025-11-25 18:01:38] 2025-11-25 17:00:40,337 | INFO     | process IDs to be killed: [1257049] (in reverse order)
[2025-11-25 18:01:38] 2025-11-25 17:00:40,370 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 18:01:38] 2025-11-25 17:00:40,370 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 18:01:38] 2025-11-25 17:00:40,372 | INFO     | did not find any defunct processes belonging to 1257049
[2025-11-25 18:01:38] 2025-11-25 17:00:40,374 | INFO     | did not find any defunct processes belonging to 1257049
[2025-11-25 18:01:38] 2025-11-25 17:00:40,374 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 18:01:38] 2025-11-25 17:00:40,374 | INFO     | ready for new job
[2025-11-25 18:01:38] 2025-11-25 17:00:40,374 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 18:01:38] 2025-11-25 17:00:40,376 | INFO     | ***************************************
[2025-11-25 18:01:38] 2025-11-25 17:00:40,376 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 18:01:38] 2025-11-25 17:00:40,376 | INFO     | ***************************************
[2025-11-25 18:01:38] 2025-11-25 17:00:40,376 | INFO     | 
[2025-11-25 18:01:38] 2025-11-25 17:00:40,376 | INFO     | architecture information:
[2025-11-25 18:01:38] 2025-11-25 17:00:40,377 | INFO     | executing command: cat /etc/os-release
[2025-11-25 18:01:38] 2025-11-25 17:00:40,389 | INFO     | cat /etc/os-release:
[2025-11-25 18:01:38] NAME="CentOS Linux"
[2025-11-25 18:01:38] VERSION="7 (Core)"
[2025-11-25 18:01:38] ID="centos"
[2025-11-25 18:01:38] ID_LIKE="rhel fedora"
[2025-11-25 18:01:38] VERSION_ID="7"
[2025-11-25 18:01:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 18:01:38] ANSI_COLOR="0;31"
[2025-11-25 18:01:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 18:01:38] HOME_URL="https://www.centos.org/"
[2025-11-25 18:01:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 18:01:38] 
[2025-11-25 18:01:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 18:01:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 18:01:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 18:01:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 18:01:38] 
[2025-11-25 18:01:38] 2025-11-25 17:00:40,390 | INFO     | ***************************************
[2025-11-25 18:01:38] 2025-11-25 17:00:40,893 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-25 18:01:38] 2025-11-25 17:00:40,911 | INFO     | sufficient remaining disk space (325578653696 B)
[2025-11-25 18:01:38] 2025-11-25 17:00:40,911 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 18:01:38] 2025-11-25 17:00:40,911 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 18:01:38] 2025-11-25 17:00:40,911 | INFO     | update_server=False
[2025-11-25 18:01:38] 2025-11-25 17:00:40,911 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 18:01:38] 2025-11-25 17:00:40,911 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 18:01:38] 2025-11-25 17:00:40,911 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 18:01:38] 2025-11-25 17:00:40,911 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 18:01:38] 2025-11-25 17:00:40,911 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 18:01:38] 2025-11-25 17:00:40,912 | INFO     | aborting loop
[2025-11-25 18:01:38] 2025-11-25 17:00:41,278 | INFO     | all job control threads have been joined
[2025-11-25 18:01:38] 2025-11-25 17:00:41,749 | INFO     | all payload control threads have been joined
[2025-11-25 18:01:38] 2025-11-25 17:00:41,912 | INFO     | [job] queue monitor thread has finished
[2025-11-25 18:01:38] 2025-11-25 17:00:41,912 | INFO     | all data control threads have been joined
[2025-11-25 18:01:38] 2025-11-25 17:00:41,916 | INFO     | [job] retrieve thread has finished
[2025-11-25 18:01:38] 2025-11-25 17:00:41,917 | INFO     | [job] job monitor thread has finished
[2025-11-25 18:01:38] 2025-11-25 17:00:42,142 | INFO     | [payload] validate_post thread has finished
[2025-11-25 18:01:38] 2025-11-25 17:00:42,163 | INFO     | [data] copytool_in thread has finished
[2025-11-25 18:01:38] 2025-11-25 17:00:42,284 | INFO     | [job] control thread has finished
[2025-11-25 18:01:38] 2025-11-25 17:00:42,756 | INFO     | [payload] control thread has finished
[2025-11-25 18:01:38] 2025-11-25 17:00:42,917 | INFO     | [data] copytool_out thread has finished
[2025-11-25 18:01:38] 2025-11-25 17:00:42,918 | INFO     | [data] control thread has finished
[2025-11-25 18:01:38] 2025-11-25 17:00:42,935 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 18:01:38] 2025-11-25 17:00:43,166 | INFO     | [payload] failed_post thread has finished
[2025-11-25 18:01:38] 2025-11-25 17:00:43,192 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 18:01:38] 2025-11-25 17:00:43,197 | INFO     | [job] validate thread has finished
[2025-11-25 18:01:38] 2025-11-25 17:00:43,338 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 18:01:38] 2025-11-25 17:00:43,408 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 18:01:38] 2025-11-25 17:00:44,918 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 18:01:38] 2025-11-25 17:00:59,528 [wrapper] supervise_pilot (15 min periods counter: 28)
[2025-11-25 18:01:38] 2025-11-25 17:01:11,933 | INFO     | PID=1250462 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 18:01:38] 2025-11-25 17:01:11,933 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 18:01:38] 2025-11-25 17:01:11,933 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 18:01:38] 2025-11-25 17:01:11,933 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 18:01:38] 2025-11-25 17:01:33,438 | INFO     | [monitor] cgroup control has ended
[2025-11-25 18:01:38] 2025-11-25 17:01:33,727 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139925074532160)>', '<ExcThread(monitor, started 139924456072960)>']
[2025-11-25 18:01:38] 2025-11-25 17:01:34,051 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 18:01:38] 2025-11-25 17:01:34,051 | INFO     | [monitor] control thread has ended
[2025-11-25 18:01:38] 2025-11-25 17:01:38,753 | INFO     | all workflow threads have been joined
[2025-11-25 18:01:38] 2025-11-25 17:01:38,753 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 18:01:38] 2025-11-25 17:01:38,754 | INFO     | traces error code: 0
[2025-11-25 18:01:38] 2025-11-25 17:01:38,755 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 18:01:38] 2025-11-25 17:01:38,835 [wrapper] ==== pilot stdout END ====
[2025-11-25 18:01:38] 2025-11-25 17:01:38,839 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 18:01:38] 2025-11-25 17:01:38,843 [wrapper] pilotpid: 1250462
[2025-11-25 18:01:38] 2025-11-25 17:01:38,847 [wrapper] Pilot exit status: 0
[2025-11-25 18:01:38] 2025-11-25 17:01:38,857 [wrapper] pandaids: 6895331918
[2025-11-25 18:01:38] 2025-11-25 17:01:38,878 [wrapper] cleanup supervisor_pilot 1302700 1250463
[2025-11-25 18:01:38] 2025-11-25 17:01:38,882 [wrapper] Test setup, not cleaning
[2025-11-25 18:01:38] 2025-11-25 17:01:38,886 [wrapper] apfmon messages muted
[2025-11-25 18:01:38] 2025-11-25 17:01:38,889 [wrapper] ==== wrapper stdout END ====
[2025-11-25 18:01:38] 2025-11-25 17:01:38,893 [wrapper] ==== wrapper stderr END ====
[2025-11-25 18:01:38]  *** Error codes and diagnostics ***
[2025-11-25 18:01:38]     "exeErrorCode": 0,
[2025-11-25 18:01:38]     "exeErrorDiag": "",
[2025-11-25 18:01:38]     "pilotErrorCode": 0,
[2025-11-25 18:01:38]     "pilotErrorDiag": "",
[2025-11-25 18:01:38]  *** Listing of results directory ***
[2025-11-25 18:01:38] total 1296804
[2025-11-25 18:01:38] -rw-r--r-- 1 boinc boinc    576529 Nov 22 00:51 pilot3.tar.gz
[2025-11-25 18:01:38] -rw-r--r-- 1 boinc boinc      5112 Nov 22 00:55 queuedata.json
[2025-11-25 18:01:38] -rwx------ 1 boinc boinc     36292 Nov 22 00:56 runpilot2-wrapper.sh
[2025-11-25 18:01:38] -rw-r--r-- 1 boinc boinc       100 Nov 25 11:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 18:01:38] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 11:15 run_atlas
[2025-11-25 18:01:38] -rw-r--r-- 1 boinc boinc       105 Nov 25 11:15 job.xml
[2025-11-25 18:01:38] -rw-r--r-- 2 boinc boinc 407938930 Nov 25 11:15 EVNT.47483658._000182.pool.root.1
[2025-11-25 18:01:38] -rw-r--r-- 2 boinc boinc    590101 Nov 25 11:15 input.tar.gz
[2025-11-25 18:01:38] -rw-r--r-- 2 boinc boinc     15847 Nov 25 11:15 start_atlas.sh
[2025-11-25 18:01:38] drwxrwx--x 2 boinc boinc      4096 Nov 25 11:15 shared
[2025-11-25 18:01:38] -rw-r--r-- 1 boinc boinc         0 Nov 25 11:15 boinc_setup_complete
[2025-11-25 18:01:38] -rw-r--r-- 1 boinc boinc      6374 Nov 25 11:15 init_data.xml
[2025-11-25 18:01:38] -rw-r--r-- 1 boinc boinc         0 Nov 25 11:15 boinc_lockfile
[2025-11-25 18:01:38] -rw-r--r-- 1 boinc boinc      2785 Nov 25 11:15 pandaJob.out
[2025-11-25 18:01:38] -rw------- 1 boinc boinc    991894 Nov 25 11:15 agis_schedconf.cvmfs.json
[2025-11-25 18:01:38] drwx------ 5 boinc boinc      4096 Nov 25 11:16 pilot3
[2025-11-25 18:01:38] -rw-r--r-- 1 boinc boinc       531 Nov 25 17:56 boinc_task_state.xml
[2025-11-25 18:01:38] -rw------- 1 boinc boinc 906879251 Nov 25 18:00 HITS.47556137._001819.pool.root.1
[2025-11-25 18:01:38] -rw------- 1 boinc boinc      1027 Nov 25 18:00 memory_monitor_summary.json
[2025-11-25 18:01:38] -rw------- 1 boinc boinc   1516240 Nov 25 18:00 agis_ddmendpoints.agis.ALL.json
[2025-11-25 18:01:38] -rw------- 1 boinc boinc   1243463 Nov 25 18:00 log.47556137._001819.job.log.tgz.1
[2025-11-25 18:01:38] -rw------- 1 boinc boinc      8577 Nov 25 18:00 heartbeat.json
[2025-11-25 18:01:38] -rw------- 1 boinc boinc        95 Nov 25 18:01 pilot_heartbeat.json
[2025-11-25 18:01:38] -rw-r--r-- 1 boinc boinc        28 Nov 25 18:01 wrapper_checkpoint.txt
[2025-11-25 18:01:38] -rw-r--r-- 1 boinc boinc      8192 Nov 25 18:01 boinc_mmap_file
[2025-11-25 18:01:38] -rw------- 1 boinc boinc      4752 Nov 25 18:01 pilotlog.txt
[2025-11-25 18:01:38] -rw------- 1 boinc boinc   3358219 Nov 25 18:01 log.47556137._001819.job.log.1
[2025-11-25 18:01:38] -rw------- 1 boinc boinc       353 Nov 25 18:01 output.list
[2025-11-25 18:01:38] -rw-r--r-- 1 boinc boinc       620 Nov 25 18:01 runtime_log
[2025-11-25 18:01:38] -rw------- 1 boinc boinc   4618240 Nov 25 18:01 result.tar.gz
[2025-11-25 18:01:38] -rw-r--r-- 1 boinc boinc      8918 Nov 25 18:01 runtime_log.err
[2025-11-25 18:01:38] -rw------- 1 boinc boinc       669 Nov 25 18:01 BAbLDmNAqg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDoJKDmGVE61m.diag
[2025-11-25 18:01:38] -rw-r--r-- 1 boinc boinc     11846 Nov 25 18:01 stderr.txt
[2025-11-25 18:01:38] HITS file was successfully produced:
[2025-11-25 18:01:38] -rw------- 1 boinc boinc 906879251 Nov 25 18:00 shared/HITS.pool.root.1
[2025-11-25 18:01:38]  *** Contents of shared directory: ***
[2025-11-25 18:01:38] total 1289124
[2025-11-25 18:01:38] -rw-r--r-- 2 boinc boinc 407938930 Nov 25 11:15 ATLAS.root_0
[2025-11-25 18:01:38] -rw-r--r-- 2 boinc boinc    590101 Nov 25 11:15 input.tar.gz
[2025-11-25 18:01:38] -rw-r--r-- 2 boinc boinc     15847 Nov 25 11:15 start_atlas.sh
[2025-11-25 18:01:38] -rw------- 1 boinc boinc 906879251 Nov 25 18:00 HITS.pool.root.1
[2025-11-25 18:01:38] -rw------- 1 boinc boinc   4618240 Nov 25 18:01 result.tar.gz
18:01:40 (1246666): run_atlas exited; CPU time 95061.702344
18:01:40 (1246666): called boinc_finish(0)

</stderr_txt>
]]>

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