Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:33:48 (1274360): wrapper (7.7.26015): starting
15:33:48 (1274360): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 15:33:48] Arguments: --nthreads 3
[2025-11-25 15:33:48] Threads: 3
[2025-11-25 15:33:48] Checking for CVMFS
[2025-11-25 15:33:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 15:33:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 15:33:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 15:33:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 15:33:48] 2.9.2.0 4065016 9920 85088 153285 2 81 34502249 36864001 0 130560 1 3699188 99.925 512285 706 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 15:33:48] CVMFS is ok
[2025-11-25 15:33:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 15:33:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 15:33:48] Further information can be found at the LHC@home message board.
[2025-11-25 15:33:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 15:33:48] Checking for apptainer binary...
[2025-11-25 15:33:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 15:33:48] Running /usr/bin/apptainer --version
[2025-11-25 15:33:48] apptainer version 1.4.1-1.1
[2025-11-25 15:33:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 15:33:48] thA312a
[2025-11-25 15:33:48] apptainer works
[2025-11-25 15:33:48] Set ATHENA_PROC_NUMBER=3
[2025-11-25 15:33:48] Set ATHENA_CORE_NUMBER=3
[2025-11-25 15:33:48] Starting ATLAS job with PandaID=6895331911
[2025-11-25 15:33:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 23:24:48]  *** The last 200 lines of the pilot log: ***
[2025-11-25 23:24:48] 2025-11-25 22:24:18,389 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 23:24:48] 2025-11-25 22:24:18,389 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 23:24:48] 2025-11-25 22:24:18,391 | INFO     | did not find any defunct processes belonging to 1284545
[2025-11-25 23:24:48] 2025-11-25 22:24:18,392 | INFO     | did not find any defunct processes belonging to 1284545
[2025-11-25 23:24:48] 2025-11-25 22:24:18,393 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 23:24:48] 2025-11-25 22:24:18,393 | INFO     | ready for new job
[2025-11-25 23:24:48] 2025-11-25 22:24:18,393 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 23:24:48] 2025-11-25 22:24:18,394 | INFO     | ***************************************
[2025-11-25 23:24:48] 2025-11-25 22:24:18,394 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 23:24:48] 2025-11-25 22:24:18,394 | INFO     | ***************************************
[2025-11-25 23:24:48] 2025-11-25 22:24:18,394 | INFO     | 
[2025-11-25 23:24:48] 2025-11-25 22:24:18,394 | INFO     | architecture information:
[2025-11-25 23:24:48] 2025-11-25 22:24:18,395 | INFO     | executing command: cat /etc/os-release
[2025-11-25 23:24:48] 2025-11-25 22:24:18,404 | INFO     | cat /etc/os-release:
[2025-11-25 23:24:48] NAME="CentOS Linux"
[2025-11-25 23:24:48] VERSION="7 (Core)"
[2025-11-25 23:24:48] ID="centos"
[2025-11-25 23:24:48] ID_LIKE="rhel fedora"
[2025-11-25 23:24:48] VERSION_ID="7"
[2025-11-25 23:24:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 23:24:48] ANSI_COLOR="0;31"
[2025-11-25 23:24:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 23:24:48] HOME_URL="https://www.centos.org/"
[2025-11-25 23:24:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 23:24:48] 
[2025-11-25 23:24:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 23:24:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 23:24:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 23:24:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 23:24:48] 
[2025-11-25 23:24:48] 2025-11-25 22:24:18,404 | INFO     | ***************************************
[2025-11-25 23:24:48] 2025-11-25 22:24:18,908 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-25 23:24:48] 2025-11-25 22:24:18,921 | INFO     | sufficient remaining disk space (266575282176 B)
[2025-11-25 23:24:48] 2025-11-25 22:24:18,921 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 23:24:48] 2025-11-25 22:24:18,922 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 23:24:48] 2025-11-25 22:24:18,922 | INFO     | update_server=False
[2025-11-25 23:24:48] 2025-11-25 22:24:18,922 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 23:24:48] 2025-11-25 22:24:18,922 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 23:24:48] 2025-11-25 22:24:18,922 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:24:48] 2025-11-25 22:24:19,042 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 23:24:48] 2025-11-25 22:24:19,087 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 23:24:48] 2025-11-25 22:24:19,087 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 23:24:48] 2025-11-25 22:24:19,087 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:24:48] 2025-11-25 22:24:19,087 | INFO     | will abort loop
[2025-11-25 23:24:48] 2025-11-25 22:24:19,330 | INFO     | all job control threads have been joined
[2025-11-25 23:24:48] 2025-11-25 22:24:19,509 | INFO     | all data control threads have been joined
[2025-11-25 23:24:48] 2025-11-25 22:24:19,927 | INFO     | [job] retrieve thread has finished
[2025-11-25 23:24:48] 2025-11-25 22:24:19,928 | INFO     | [job] queue monitor thread has finished
[2025-11-25 23:24:48] 2025-11-25 22:24:20,076 | INFO     | [payload] failed_post thread has finished
[2025-11-25 23:24:48] 2025-11-25 22:24:20,092 | INFO     | [job] job monitor thread has finished
[2025-11-25 23:24:48] 2025-11-25 22:24:20,336 | INFO     | [job] control thread has finished
[2025-11-25 23:24:48] 2025-11-25 22:24:20,364 | INFO     | all payload control threads have been joined
[2025-11-25 23:24:48] 2025-11-25 22:24:20,514 | INFO     | [data] control thread has finished
[2025-11-25 23:24:48] 2025-11-25 22:24:20,604 | INFO     | [payload] validate_post thread has finished
[2025-11-25 23:24:48] 2025-11-25 22:24:20,655 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 23:24:48] 2025-11-25 22:24:20,863 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 23:24:48] 2025-11-25 22:24:20,868 | INFO     | [job] validate thread has finished
[2025-11-25 23:24:48] 2025-11-25 22:24:20,884 | INFO     | [data] copytool_in thread has finished
[2025-11-25 23:24:48] 2025-11-25 22:24:20,994 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 23:24:48] 2025-11-25 22:24:21,049 | INFO     | [data] copytool_out thread has finished
[2025-11-25 23:24:48] 2025-11-25 22:24:21,096 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 23:24:48] 2025-11-25 22:24:21,370 | INFO     | [payload] control thread has finished
[2025-11-25 23:24:48] 2025-11-25 22:24:22,929 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 23:24:48] 2025-11-25 22:24:25,719 | INFO     | [monitor] cgroup control has ended
[2025-11-25 23:24:48] 2025-11-25 22:24:26,631 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139939855525696)>', '<ExcThread(monitor, started 139939060627200)>']
[2025-11-25 23:24:48] 2025-11-25 22:24:31,656 | INFO     | all workflow threads have been joined
[2025-11-25 23:24:48] 2025-11-25 22:24:31,657 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 23:24:48] 2025-11-25 22:24:31,657 | INFO     | traces error code: 0
[2025-11-25 23:24:48] 2025-11-25 22:24:31,657 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 23:24:48] 2025-11-25 22:24:48,652 | INFO     | PID=1278096 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 23:24:48] 2025-11-25 22:24:48,652 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 23:24:48] 2025-11-25 22:24:48,652 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 23:24:48] 2025-11-25 22:24:48,652 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 23:24:48] 2025-11-25 22:24:48,652 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 23:24:48] 2025-11-25 22:24:48,652 | INFO     | [monitor] control thread has ended
[2025-11-25 23:24:48] 2025-11-25 22:24:48,699 [wrapper] ==== pilot stdout END ====
[2025-11-25 23:24:48] 2025-11-25 22:24:48,702 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 23:24:48] 2025-11-25 22:24:48,705 [wrapper] pilotpid: 1278096
[2025-11-25 23:24:48] 2025-11-25 22:24:48,707 [wrapper] Pilot exit status: 0
[2025-11-25 23:24:48] 2025-11-25 22:24:48,715 [wrapper] pandaids: 6895331911
[2025-11-25 23:24:48] 2025-11-25 22:24:48,732 [wrapper] cleanup supervisor_pilot 1337652 1278097
[2025-11-25 23:24:48] 2025-11-25 22:24:48,735 [wrapper] Test setup, not cleaning
[2025-11-25 23:24:48] 2025-11-25 22:24:48,738 [wrapper] apfmon messages muted
[2025-11-25 23:24:48] 2025-11-25 22:24:48,740 [wrapper] ==== wrapper stdout END ====
[2025-11-25 23:24:48] 2025-11-25 22:24:48,742 [wrapper] ==== wrapper stderr END ====
[2025-11-25 23:24:48]  *** Error codes and diagnostics ***
[2025-11-25 23:24:48]     "exeErrorCode": 0,
[2025-11-25 23:24:48]     "exeErrorDiag": "",
[2025-11-25 23:24:48]     "pilotErrorCode": 0,
[2025-11-25 23:24:48]     "pilotErrorDiag": "",
[2025-11-25 23:24:48]  *** Listing of results directory ***
[2025-11-25 23:24:48] total 1304984
[2025-11-25 23:24:48] -rw-r--r-- 1 boinc boinc    576529 Nov 22 00:51 pilot3.tar.gz
[2025-11-25 23:24:48] -rw-r--r-- 1 boinc boinc      5112 Nov 22 00:55 queuedata.json
[2025-11-25 23:24:48] -rwx------ 1 boinc boinc     36292 Nov 22 00:56 runpilot2-wrapper.sh
[2025-11-25 23:24:48] -rw-r--r-- 1 boinc boinc       100 Nov 25 15:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 23:24:48] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 15:33 run_atlas
[2025-11-25 23:24:48] -rw-r--r-- 1 boinc boinc       105 Nov 25 15:33 job.xml
[2025-11-25 23:24:48] -rw-r--r-- 2 boinc boinc 407938930 Nov 25 15:33 EVNT.47483658._000182.pool.root.1
[2025-11-25 23:24:48] -rw-r--r-- 2 boinc boinc    590100 Nov 25 15:33 input.tar.gz
[2025-11-25 23:24:48] -rw-r--r-- 2 boinc boinc     15847 Nov 25 15:33 start_atlas.sh
[2025-11-25 23:24:48] drwxrwx--x 2 boinc boinc      4096 Nov 25 15:33 shared
[2025-11-25 23:24:48] -rw-r--r-- 1 boinc boinc         0 Nov 25 15:33 boinc_setup_complete
[2025-11-25 23:24:48] -rw-r--r-- 1 boinc boinc      6448 Nov 25 15:33 init_data.xml
[2025-11-25 23:24:48] -rw-r--r-- 1 boinc boinc         0 Nov 25 15:33 boinc_lockfile
[2025-11-25 23:24:48] -rw-r--r-- 1 boinc boinc      2785 Nov 25 15:33 pandaJob.out
[2025-11-25 23:24:48] -rw------- 1 boinc boinc    991909 Nov 25 15:33 agis_schedconf.cvmfs.json
[2025-11-25 23:24:48] drwx------ 5 boinc boinc      4096 Nov 25 15:33 pilot3
[2025-11-25 23:24:48] -rw-r--r-- 1 boinc boinc       531 Nov 25 23:20 boinc_task_state.xml
[2025-11-25 23:24:48] -rw------- 1 boinc boinc 914181863 Nov 25 23:23 HITS.47556137._001812.pool.root.1
[2025-11-25 23:24:48] -rw------- 1 boinc boinc      1021 Nov 25 23:24 memory_monitor_summary.json
[2025-11-25 23:24:48] -rw------- 1 boinc boinc   1516240 Nov 25 23:24 agis_ddmendpoints.agis.ALL.json
[2025-11-25 23:24:48] -rw------- 1 boinc boinc   1164913 Nov 25 23:24 log.47556137._001812.job.log.tgz.1
[2025-11-25 23:24:48] -rw------- 1 boinc boinc      8559 Nov 25 23:24 heartbeat.json
[2025-11-25 23:24:48] -rw-r--r-- 1 boinc boinc      8192 Nov 25 23:24 boinc_mmap_file
[2025-11-25 23:24:48] -rw-r--r-- 1 boinc boinc        28 Nov 25 23:24 wrapper_checkpoint.txt
[2025-11-25 23:24:48] -rw------- 1 boinc boinc       747 Nov 25 23:24 pilotlog.txt
[2025-11-25 23:24:48] -rw------- 1 boinc boinc        95 Nov 25 23:24 pilot_heartbeat.json
[2025-11-25 23:24:48] -rw------- 1 boinc boinc   3973562 Nov 25 23:24 log.47556137._001812.job.log.1
[2025-11-25 23:24:48] -rw------- 1 boinc boinc       353 Nov 25 23:24 output.list
[2025-11-25 23:24:48] -rw-r--r-- 1 boinc boinc       620 Nov 25 23:24 runtime_log
[2025-11-25 23:24:48] -rw------- 1 boinc boinc   5160960 Nov 25 23:24 result.tar.gz
[2025-11-25 23:24:48] -rw-r--r-- 1 boinc boinc      8903 Nov 25 23:24 runtime_log.err
[2025-11-25 23:24:48] -rw------- 1 boinc boinc       666 Nov 25 23:24 K4JLDmXAqg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmtrHKDmn8dpom.diag
[2025-11-25 23:24:48] -rw-r--r-- 1 boinc boinc     10423 Nov 25 23:24 stderr.txt
[2025-11-25 23:24:48] HITS file was successfully produced:
[2025-11-25 23:24:48] -rw------- 1 boinc boinc 914181863 Nov 25 23:23 shared/HITS.pool.root.1
[2025-11-25 23:24:48]  *** Contents of shared directory: ***
[2025-11-25 23:24:48] total 1296780
[2025-11-25 23:24:48] -rw-r--r-- 2 boinc boinc 407938930 Nov 25 15:33 ATLAS.root_0
[2025-11-25 23:24:48] -rw-r--r-- 2 boinc boinc    590100 Nov 25 15:33 input.tar.gz
[2025-11-25 23:24:48] -rw-r--r-- 2 boinc boinc     15847 Nov 25 15:33 start_atlas.sh
[2025-11-25 23:24:48] -rw------- 1 boinc boinc 914181863 Nov 25 23:23 HITS.pool.root.1
[2025-11-25 23:24:48] -rw------- 1 boinc boinc   5160960 Nov 25 23:24 result.tar.gz
23:24:50 (1274360): run_atlas exited; CPU time 83236.984644
23:24:50 (1274360): called boinc_finish(0)

</stderr_txt>
]]>

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