Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:41:37 (16926): wrapper (7.7.26015): starting
14:41:37 (16926): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 14:41:37] Arguments: --nthreads 8
[2025-11-25 14:41:37] Threads: 8
[2025-11-25 14:41:37] Checking for CVMFS
[2025-11-25 14:41:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 14:41:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 14:41:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 14:41:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 14:41:39] 2.11.2.0 6805 283838 143952 153284 1 85 15642519 25165824 4632 130560 40 121210005 99.857 81169013 3000 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 14:41:39] CVMFS is ok
[2025-11-25 14:41:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 14:41:39] Checking for apptainer binary...
[2025-11-25 14:41:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 14:41:39] Running /usr/bin/apptainer --version
[2025-11-25 14:41:39] apptainer version 1.3.2-1.el7
[2025-11-25 14:41:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 14:42:01] cg-vwn251.simple-grid.lan
[2025-11-25 14:42:01] apptainer works
[2025-11-25 14:42:01] Set ATHENA_PROC_NUMBER=8
[2025-11-25 14:42:01] Set ATHENA_CORE_NUMBER=8
[2025-11-25 14:42:02] Starting ATLAS job with PandaID=6893884761
[2025-11-25 14:42:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 14:41:23]  *** The last 200 lines of the pilot log: ***
[2025-11-26 14:41:23] 2025-11-26 13:40:05,103 | INFO     | time since job start (86062s) is within the limit (172800.0s)
[2025-11-26 14:41:23] 2025-11-26 13:40:05,449 | INFO     | monitor loop #5796: job 0:6893884761 is in state 'finished'
[2025-11-26 14:41:23] 2025-11-26 13:40:05,449 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:41:23] 2025-11-26 13:40:07,111 | INFO     | time since job start (86064s) is within the limit (172800.0s)
[2025-11-26 14:41:23] 2025-11-26 13:40:07,963 | INFO     | monitor loop #5797: job 0:6893884761 is in state 'finished'
[2025-11-26 14:41:23] 2025-11-26 13:40:07,964 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:41:23] 2025-11-26 13:40:09,118 | INFO     | time since job start (86066s) is within the limit (172800.0s)
[2025-11-26 14:41:23] 2025-11-26 13:40:10,469 | INFO     | monitor loop #5798: job 0:6893884761 is in state 'finished'
[2025-11-26 14:41:23] 2025-11-26 13:40:10,470 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:41:23] 2025-11-26 13:40:11,124 | INFO     | time since job start (86068s) is within the limit (172800.0s)
[2025-11-26 14:41:23] 2025-11-26 13:40:12,975 | INFO     | monitor loop #5799: job 0:6893884761 is in state 'finished'
[2025-11-26 14:41:23] 2025-11-26 13:40:12,976 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:41:23] 2025-11-26 13:40:13,131 | INFO     | time since job start (86070s) is within the limit (172800.0s)
[2025-11-26 14:41:23] 2025-11-26 13:40:14,311 | INFO     | PID=20682 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 14:41:23] 2025-11-26 13:40:14,312 | INFO     | .. there are 9 such processes running
[2025-11-26 14:41:23] 2025-11-26 13:40:14,550 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 14:41:23] 2025-11-26 13:40:14,551 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 14:41:23] 2025-11-26 13:40:14,552 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6893884761/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 14:41:23] 2025-11-26 13:40:14,553 | INFO     | extracted standard info from prmon json
[2025-11-26 14:41:23] 2025-11-26 13:40:14,553 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 14:41:23] 2025-11-26 13:40:14,553 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 14:41:23] 2025-11-26 13:40:14,586 | INFO     | fitting pss+swap vs Time
[2025-11-26 14:41:23] 2025-11-26 13:40:14,596 | INFO     | sum of square deviations: 852687668813.7483
[2025-11-26 14:41:23] 2025-11-26 13:40:14,677 | INFO     | sum of deviations: 4016821133458.1543
[2025-11-26 14:41:23] 2025-11-26 13:40:14,677 | INFO     | mean x: 1764121557.1855817
[2025-11-26 14:41:23] 2025-11-26 13:40:14,677 | INFO     | mean y: 2841912.6609564596
[2025-11-26 14:41:23] 2025-11-26 13:40:14,677 | INFO     | intersect: -8307540671.79738
[2025-11-26 14:41:23] 2025-11-26 13:40:14,679 | INFO     | chi2: 19.048692948783913
[2025-11-26 14:41:23] 2025-11-26 13:40:14,681 | INFO     | sum of square deviations: 843591242056.6958
[2025-11-26 14:41:23] 2025-11-26 13:40:14,750 | INFO     | sum of deviations: 4471778619547.5205
[2025-11-26 14:41:23] 2025-11-26 13:40:14,750 | INFO     | mean x: 1764121404.6898282
[2025-11-26 14:41:23] 2025-11-26 13:40:14,751 | INFO     | mean y: 2849541.1282234956
[2025-11-26 14:41:23] 2025-11-26 13:40:14,751 | INFO     | intersect: -9348551927.36631
[2025-11-26 14:41:23] 2025-11-26 13:40:14,752 | INFO     | chi2: 16.01053085356059
[2025-11-26 14:41:23] 2025-11-26 13:40:14,752 | INFO     | current chi2=16.01053085356059 (change=15.949451772843467 %)
[2025-11-26 14:41:23] 2025-11-26 13:40:14,753 | INFO     | right removable region: 1395
[2025-11-26 14:41:23] 2025-11-26 13:40:14,755 | INFO     | sum of square deviations: 843590228846.6946
[2025-11-26 14:41:23] 2025-11-26 13:40:14,812 | INFO     | sum of deviations: 3437127286741.725
[2025-11-26 14:41:23] 2025-11-26 13:40:14,812 | INFO     | mean x: 1764121709.6898282
[2025-11-26 14:41:23] 2025-11-26 13:40:14,812 | INFO     | mean y: 2851629.5651862463
[2025-11-26 14:41:23] 2025-11-26 13:40:14,813 | INFO     | intersect: -7184892678.234629
[2025-11-26 14:41:23] 2025-11-26 13:40:14,814 | INFO     | chi2: 14.434361264438095
[2025-11-26 14:41:23] 2025-11-26 13:40:14,814 | INFO     | current chi2=14.434361264438095 (change=24.223875605283464 %)
[2025-11-26 14:41:23] 2025-11-26 13:40:14,814 | INFO     | left removable region: 10
[2025-11-26 14:41:23] 2025-11-26 13:40:14,816 | INFO     | sum of square deviations: 823805308027.0012
[2025-11-26 14:41:23] 2025-11-26 13:40:14,873 | INFO     | sum of deviations: 3532225946880.7974
[2025-11-26 14:41:23] 2025-11-26 13:40:14,873 | INFO     | mean x: 1764121679.1992779
[2025-11-26 14:41:23] 2025-11-26 13:40:14,874 | INFO     | mean y: 2869022.2036101082
[2025-11-26 14:41:23] 2025-11-26 13:40:14,874 | INFO     | intersect: -7561146781.0526285
[2025-11-26 14:41:23] 2025-11-26 13:40:14,875 | INFO     | chi2: 7.7126792937271675
[2025-11-26 14:41:23] 2025-11-26 13:40:14,876 | INFO     | current memory leak: 4.29 B/s (using 1385 data points, chi2=7.71)
[2025-11-26 14:41:23] 2025-11-26 13:40:14,877 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-26 14:41:23] 2025-11-26 13:40:14,877 | INFO     | ..............................
[2025-11-26 14:41:23] 2025-11-26 13:40:14,877 | INFO     | . Timing measurements:
[2025-11-26 14:41:23] 2025-11-26 13:40:14,877 | INFO     | . get job = 0 s
[2025-11-26 14:41:23] 2025-11-26 13:40:14,877 | INFO     | . initial setup = 6 s
[2025-11-26 14:41:23] 2025-11-26 13:40:14,877 | INFO     | . payload setup = 166 s
[2025-11-26 14:41:23] 2025-11-26 13:40:14,878 | INFO     | . stage-in = 0 s
[2025-11-26 14:41:23] 2025-11-26 13:40:14,878 | INFO     | . payload execution = 85610 s
[2025-11-26 14:41:23] 2025-11-26 13:40:14,878 | INFO     | . stage-out = 5 s
[2025-11-26 14:41:23] 2025-11-26 13:40:14,878 | INFO     | . log creation = 2 s
[2025-11-26 14:41:23] 2025-11-26 13:40:14,878 | INFO     | ..............................
[2025-11-26 14:41:23] 2025-11-26 13:40:15,197 | INFO     | 
[2025-11-26 14:41:23] 2025-11-26 13:40:15,198 | INFO     | job summary report
[2025-11-26 14:41:23] 2025-11-26 13:40:15,198 | INFO     | --------------------------------------------------
[2025-11-26 14:41:23] 2025-11-26 13:40:15,198 | INFO     | PanDA job id: 6893884761
[2025-11-26 14:41:23] 2025-11-26 13:40:15,198 | INFO     | task id: 47523449
[2025-11-26 14:41:23] 2025-11-26 13:40:15,198 | INFO     | errors: (none)
[2025-11-26 14:41:23] 2025-11-26 13:40:15,198 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 14:41:23] 2025-11-26 13:40:15,198 | INFO     | pilot state: finished 
[2025-11-26 14:41:23] 2025-11-26 13:40:15,198 | INFO     | transexitcode: 0
[2025-11-26 14:41:23] 2025-11-26 13:40:15,198 | INFO     | exeerrorcode: 0
[2025-11-26 14:41:23] 2025-11-26 13:40:15,198 | INFO     | exeerrordiag: 
[2025-11-26 14:41:23] 2025-11-26 13:40:15,199 | INFO     | exitcode: 0
[2025-11-26 14:41:23] 2025-11-26 13:40:15,199 | INFO     | exitmsg: OK
[2025-11-26 14:41:23] 2025-11-26 13:40:15,199 | INFO     | cpuconsumptiontime: 322418 s
[2025-11-26 14:41:23] 2025-11-26 13:40:15,199 | INFO     | nevents: 1000
[2025-11-26 14:41:23] 2025-11-26 13:40:15,199 | INFO     | neventsw: 0
[2025-11-26 14:41:23] 2025-11-26 13:40:15,199 | INFO     | pid: 27426
[2025-11-26 14:41:23] 2025-11-26 13:40:15,199 | INFO     | pgrp: 27426
[2025-11-26 14:41:23] 2025-11-26 13:40:15,199 | INFO     | corecount: 8
[2025-11-26 14:41:23] 2025-11-26 13:40:15,199 | INFO     | event service: False
[2025-11-26 14:41:23] 2025-11-26 13:40:15,199 | INFO     | sizes: {0: 2284088, 1: 2284172, 2: 2284371, 12: 2284371, 23: 2284399, 34: 2284427, 45: 2284583, 55: 2284611, 66: 2284639, 77: 2284667, 88: 2284723, 92: 2285293, 98
[2025-11-26 14:41:23] 2025-11-26 13:40:15,199 | INFO     | --------------------------------------------------
[2025-11-26 14:41:23] 2025-11-26 13:40:15,199 | INFO     | 
[2025-11-26 14:41:23] 2025-11-26 13:40:15,200 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-26 14:41:23] 2025-11-26 13:40:15,317 | INFO     | time since job start (86072s) is within the limit (172800.0s)
[2025-11-26 14:41:23] 2025-11-26 13:40:15,729 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 14:41:23] 2025-11-26 13:40:15,729 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 14:41:23] 2025-11-26 13:40:15,729 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 14:41:23] 2025-11-26 13:40:15,730 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 14:41:23] 2025-11-26 13:40:15,730 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 14:41:23] 2025-11-26 13:40:15,730 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 14:41:23] 2025-11-26 13:40:15,730 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 14:41:23] 2025-11-26 13:40:15,730 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 14:41:23] 2025-11-26 13:40:15,730 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 14:41:23] 2025-11-26 13:40:15,730 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 14:41:23] 2025-11-26 13:40:15,730 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 14:41:23] 2025-11-26 13:40:15,730 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 14:41:23] 2025-11-26 13:40:15,730 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 14:41:23] 2025-11-26 13:40:15,730 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 14:41:23] 2025-11-26 13:40:15,730 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 14:41:23] 2025-11-26 13:40:15,731 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 14:41:23] 2025-11-26 13:40:15,731 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 14:41:23] 2025-11-26 13:40:15,731 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 14:41:23] 2025-11-26 13:40:15,731 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 14:41:23] 2025-11-26 13:40:15,731 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 14:41:23] 2025-11-26 13:40:15,731 | INFO     | job 6893884761 has completed (purged errors)
[2025-11-26 14:41:23] 2025-11-26 13:40:15,731 | INFO     | overall cleanup function is called
[2025-11-26 14:41:23] 2025-11-26 13:40:16,746 | INFO     | --- collectZombieJob: --- 10, [27426]
[2025-11-26 14:41:23] 2025-11-26 13:40:16,747 | INFO     | zombie collector waiting for pid 27426
[2025-11-26 14:41:23] 2025-11-26 13:40:16,747 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 14:41:23] 2025-11-26 13:40:16,747 | INFO     | collected zombie processes
[2025-11-26 14:41:23] 2025-11-26 13:40:16,747 | INFO     | will attempt to kill all subprocesses of pid=27426
[2025-11-26 14:41:23] 2025-11-26 13:40:16,876 | INFO     | process IDs to be killed: [27426] (in reverse order)
[2025-11-26 14:41:23] 2025-11-26 13:40:17,675 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 14:41:23] 2025-11-26 13:40:17,675 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 14:41:23] 2025-11-26 13:40:17,678 | INFO     | did not find any defunct processes belonging to 27426
[2025-11-26 14:41:23] 2025-11-26 13:40:17,680 | INFO     | did not find any defunct processes belonging to 27426
[2025-11-26 14:41:23] 2025-11-26 13:40:17,736 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 14:41:23] 2025-11-26 13:40:17,736 | INFO     | ready for new job
[2025-11-26 14:41:23] 2025-11-26 13:40:17,736 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 14:41:23] 2025-11-26 13:40:17,741 | INFO     | ***************************************
[2025-11-26 14:41:23] 2025-11-26 13:40:17,741 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 14:41:23] 2025-11-26 13:40:17,741 | INFO     | ***************************************
[2025-11-26 14:41:23] 2025-11-26 13:40:17,742 | INFO     | 
[2025-11-26 14:41:23] 2025-11-26 13:40:17,742 | INFO     | pilot is running in a VM
[2025-11-26 14:41:23] 2025-11-26 13:40:17,742 | INFO     | architecture information:
[2025-11-26 14:41:23] 2025-11-26 13:40:17,750 | INFO     | executing command: cat /etc/os-release
[2025-11-26 14:41:23] 2025-11-26 13:40:17,914 | INFO     | cat /etc/os-release:
[2025-11-26 14:41:23] NAME="CentOS Linux"
[2025-11-26 14:41:23] VERSION="7 (Core)"
[2025-11-26 14:41:23] ID="centos"
[2025-11-26 14:41:23] ID_LIKE="rhel fedora"
[2025-11-26 14:41:23] VERSION_ID="7"
[2025-11-26 14:41:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 14:41:23] ANSI_COLOR="0;31"
[2025-11-26 14:41:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 14:41:23] HOME_URL="https://www.centos.org/"
[2025-11-26 14:41:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 14:41:23] 
[2025-11-26 14:41:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 14:41:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 14:41:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 14:41:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 14:41:23] 
[2025-11-26 14:41:23] 2025-11-26 13:40:17,914 | INFO     | ***************************************
[2025-11-26 14:41:23] 2025-11-26 13:40:18,418 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-26 14:41:23] 2025-11-26 13:40:18,556 | INFO     | sufficient remaining disk space (495558066176 B)
[2025-11-26 14:41:23] 2025-11-26 13:40:18,556 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 14:41:23] 2025-11-26 13:40:18,557 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 14:41:23] 2025-11-26 13:40:18,557 | INFO     | update_server=False
[2025-11-26 14:41:23] 2025-11-26 13:40:18,557 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 14:41:23] 2025-11-26 13:40:18,989 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 14:41:23] 2025-11-26 13:40:18,990 | INFO     | aborting loop
[2025-11-26 14:41:23] 2025-11-26 13:40:19,247 | INFO     | all payload control threads have been joined
[2025-11-26 14:41:23] 2025-11-26 13:40:19,562 | INFO     | [job] retrieve thread has finished
[2025-11-26 14:41:23] 2025-11-26 13:40:19,573 | INFO     | all data control threads have been joined
[2025-11-26 14:41:23] 2025-11-26 13:40:19,674 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 14:41:23] 2025-11-26 13:40:19,783 | INFO     | [payload] validate_post thread has finished
[2025-11-26 14:41:23] 2025-11-26 13:40:19,824 | INFO     | [job] validate thread has finished
[2025-11-26 14:41:23] 2025-11-26 13:40:19,914 | INFO     | all job control threads have been joined
[2025-11-26 14:41:23] 2025-11-26 13:40:19,981 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 14:41:23] 2025-11-26 13:40:19,982 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 14:41:23] 2025-11-26 13:40:19,995 | INFO     | [job] job monitor thread has finished
[2025-11-26 14:41:23] 2025-11-26 13:40:20,003 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 14:41:23] 2025-11-26 13:40:20,215 | INFO     | [payload] failed_post thread has finished
[2025-11-26 14:41:23] 2025-11-26 13:40:20,252 | INFO     | [payload] control thread has finished
[2025-11-26 14:41:23] 2025-11-26 13:40:20,551 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 14:41:23] 2025-11-26 13:40:20,579 | INFO     | [data] control thread has finished
[2025-11-26 14:41:23] 2025-11-26 13:40:20,759 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 14:41:23] 2025-11-26 13:40:20,920 | INFO     | [job] control thread has finished
[2025-11-26 14:41:23] 2025-11-26 13:40:20,922 | INFO     | [data] copytool_in thread has finished
[2025-11-26 14:41:23] 2025-11-26 13:40:21,009 | INFO     | [job] queue monitor thread has finished
[2025-11-26 14:41:23] 2025-11-26 13:40:21,681 | INFO     | [data] copytool_out thread has finished
[2025-11-26 14:41:23] 2025-11-26 13:40:21,867 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 14:41:23] 2025-11-26 13:40:25,876 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 14:41:23] 2025-11-26 13:40:48,557 | INFO     | PID=20682 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 14:41:23] 2025-11-26 13:40:48,558 | INFO     | .. there are 9 such processes running
[2025-11-26 14:41:23] 2025-11-26 13:40:48,558 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 14:41:23] 2025-11-26 13:40:48,558 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 14:41:23] 2025-11-26 13:40:48,558 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 14:41:23] 2025-11-26 13:41:12,816 | INFO     | [monitor] cgroup control has ended
[2025-11-26 14:41:23] 2025-11-26 13:41:13,712 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139984257206080)>', '<ExcThread(monitor, started 139983956457216)>']
[2025-11-26 14:41:23] 2025-11-26 13:41:14,716 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 14:41:23] 2025-11-26 13:41:14,717 | INFO     | [monitor] control thread has ended
[2025-11-26 14:41:23] 2025-11-26 13:41:18,738 | INFO     | all workflow threads have been joined
[2025-11-26 14:41:23] 2025-11-26 13:41:18,739 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 14:41:23] 2025-11-26 13:41:18,739 | INFO     | traces error code: 0
[2025-11-26 14:41:23] 2025-11-26 13:41:18,739 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 14:41:23] 2025-11-26 13:41:19,111 [wrapper] ==== pilot stdout END ====
[2025-11-26 14:41:23] 2025-11-26 13:41:19,171 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 14:41:23] 2025-11-26 13:41:19,260 [wrapper] pilotpid: 20682
[2025-11-26 14:41:23] 2025-11-26 13:41:19,360 [wrapper] Pilot exit status: 0
[2025-11-26 14:41:23] 2025-11-26 13:41:19,773 [wrapper] pandaids: 6893884761
[2025-11-26 14:41:23] 2025-11-26 13:41:20,346 [wrapper] cleanup supervisor_pilot 16779 20683
[2025-11-26 14:41:23] 2025-11-26 13:41:20,394 [wrapper] Test setup, not cleaning
[2025-11-26 14:41:23] 2025-11-26 13:41:20,503 [wrapper] apfmon messages muted
[2025-11-26 14:41:23] 2025-11-26 13:41:20,605 [wrapper] ==== wrapper stdout END ====
[2025-11-26 14:41:23] 2025-11-26 13:41:20,659 [wrapper] ==== wrapper stderr END ====
[2025-11-26 14:41:23]  *** Error codes and diagnostics ***
[2025-11-26 14:41:23]     "exeErrorCode": 0,
[2025-11-26 14:41:23]     "exeErrorDiag": "",
[2025-11-26 14:41:23]     "pilotErrorCode": 0,
[2025-11-26 14:41:23]     "pilotErrorDiag": "",
[2025-11-26 14:41:23]  *** Listing of results directory ***
[2025-11-26 14:41:23] total 1325328
[2025-11-26 14:41:23] -rw-r--r--. 1 boinc boinc    576529 Nov 20 22:55 pilot3.tar.gz
[2025-11-26 14:41:23] -rwx------. 1 boinc boinc     36292 Nov 20 23:02 runpilot2-wrapper.sh
[2025-11-26 14:41:23] -rw-r--r--. 1 boinc boinc      5112 Nov 20 23:02 queuedata.json
[2025-11-26 14:41:23] -rw-r--r--. 1 boinc boinc       100 Nov 25 14:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 14:41:23] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 14:41 run_atlas
[2025-11-26 14:41:23] -rw-r--r--. 1 boinc boinc       105 Nov 25 14:41 job.xml
[2025-11-26 14:41:23] -rw-r--r--. 2 boinc boinc 410113192 Nov 25 14:41 EVNT.47493127._000936.pool.root.1
[2025-11-26 14:41:23] -rw-r--r--. 1 boinc boinc      6390 Nov 25 14:41 init_data.xml
[2025-11-26 14:41:23] -rw-r--r--. 2 boinc boinc     15847 Nov 25 14:41 start_atlas.sh
[2025-11-26 14:41:23] drwxrwx--x. 2 boinc boinc        68 Nov 25 14:41 shared
[2025-11-26 14:41:23] -rw-r--r--. 2 boinc boinc    590092 Nov 25 14:41 input.tar.gz
[2025-11-26 14:41:23] -rw-r--r--. 1 boinc boinc         0 Nov 25 14:41 boinc_lockfile
[2025-11-26 14:41:23] -rw-r--r--. 1 boinc boinc      2786 Nov 25 14:42 pandaJob.out
[2025-11-26 14:41:23] -rw-------. 1 boinc boinc    991909 Nov 25 14:45 agis_schedconf.cvmfs.json
[2025-11-26 14:41:23] drwx------. 5 boinc boinc      4096 Nov 25 14:45 pilot3
[2025-11-26 14:41:23] -rw-r--r--. 1 boinc boinc       533 Nov 26 14:21 boinc_task_state.xml
[2025-11-26 14:41:23] -rw-------. 1 boinc boinc 915115406 Nov 26 14:37 HITS.47523449._009354.pool.root.1
[2025-11-26 14:41:23] -rw-------. 1 boinc boinc      1030 Nov 26 14:38 memory_monitor_summary.json
[2025-11-26 14:41:23] -rw-------. 1 boinc boinc   1516240 Nov 26 14:38 agis_ddmendpoints.agis.ALL.json
[2025-11-26 14:41:23] -rw-------. 1 boinc boinc   2497204 Nov 26 14:38 log.47523449._009354.job.log.tgz.1
[2025-11-26 14:41:23] -rw-------. 1 boinc boinc        95 Nov 26 14:40 pilot_heartbeat.json
[2025-11-26 14:41:23] -rw-------. 1 boinc boinc      8625 Nov 26 14:40 heartbeat.json
[2025-11-26 14:41:23] -rw-r--r--. 1 boinc boinc        29 Nov 26 14:41 wrapper_checkpoint.txt
[2025-11-26 14:41:23] -rw-r--r--. 1 boinc boinc      8192 Nov 26 14:41 boinc_mmap_file
[2025-11-26 14:41:23] -rw-------. 1 boinc boinc      4884 Nov 26 14:41 pilotlog.txt
[2025-11-26 14:41:23] -rw-------. 1 boinc boinc  11502322 Nov 26 14:41 log.47523449._009354.job.log.1
[2025-11-26 14:41:23] -rw-------. 1 boinc boinc       353 Nov 26 14:41 output.list
[2025-11-26 14:41:23] -rw-r--r--. 1 boinc boinc       620 Nov 26 14:41 runtime_log
[2025-11-26 14:41:23] -rw-------. 1 boinc boinc  14018560 Nov 26 14:41 result.tar.gz
[2025-11-26 14:41:23] -rw-r--r--. 1 boinc boinc      8817 Nov 26 14:41 runtime_log.err
[2025-11-26 14:41:23] -rw-------. 1 boinc boinc       662 Nov 26 14:41 qnbNDmZuRg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmebIKDmZJZkGn.diag
[2025-11-26 14:41:23] -rw-r--r--. 1 boinc boinc     21446 Nov 26 14:41 stderr.txt
[2025-11-26 14:41:23] HITS file was successfully produced:
[2025-11-26 14:41:23] -rw-------. 1 boinc boinc 915115406 Nov 26 14:37 shared/HITS.pool.root.1
[2025-11-26 14:41:23]  *** Contents of shared directory: ***
[2025-11-26 14:41:23] total 1308460
[2025-11-26 14:41:23] -rw-r--r--. 2 boinc boinc 410113192 Nov 25 14:41 ATLAS.root_0
[2025-11-26 14:41:23] -rw-r--r--. 2 boinc boinc     15847 Nov 25 14:41 start_atlas.sh
[2025-11-26 14:41:23] -rw-r--r--. 2 boinc boinc    590092 Nov 25 14:41 input.tar.gz
[2025-11-26 14:41:23] -rw-------. 1 boinc boinc 915115406 Nov 26 14:37 HITS.pool.root.1
[2025-11-26 14:41:23] -rw-------. 1 boinc boinc  14018560 Nov 26 14:41 result.tar.gz
14:41:24 (16926): run_atlas exited; CPU time 322948.240885
14:41:24 (16926): called boinc_finish(0)

</stderr_txt>
]]>

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