Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:04:56 (3930912): wrapper (7.7.26015): starting
00:04:56 (3930912): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 00:04:56] Arguments: --nthreads 3
[2025-11-26 00:04:56] Threads: 3
[2025-11-26 00:04:56] Checking for CVMFS
[2025-11-26 00:04:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:04:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:04:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:04:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:04:56] 2.9.2.0 3798544 974 60540 153300 3 81 30616807 36864001 0 130560 0 364334 99.976 39774 10984 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 00:04:56] CVMFS is ok
[2025-11-26 00:04:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:04:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:04:56] Further information can be found at the LHC@home message board.
[2025-11-26 00:04:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:04:56] Checking for apptainer binary...
[2025-11-26 00:04:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:04:56] Running /usr/bin/apptainer --version
[2025-11-26 00:04:56] apptainer version 1.4.1-1.1
[2025-11-26 00:04:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:04:56] itA179
[2025-11-26 00:04:56] apptainer works
[2025-11-26 00:04:56] Set ATHENA_PROC_NUMBER=3
[2025-11-26 00:04:56] Set ATHENA_CORE_NUMBER=3
[2025-11-26 00:04:56] Starting ATLAS job with PandaID=6895339099
[2025-11-26 00:04:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:04:36 (3991257): wrapper (7.7.26015): starting
08:04:36 (3991257): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 08:04:36] Arguments: --nthreads 3
[2025-11-26 08:04:36] Threads: 3
[2025-11-26 08:04:36] This job has been restarted, cleaning up previous attempt
[2025-11-26 08:04:36] Checking for CVMFS
[2025-11-26 08:04:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 08:04:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 08:04:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 08:04:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 08:04:39] 2.9.2.0 3991385 0 29996 153312 3 1 30712772 36864000 0 130560 0 0 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 08:04:39] CVMFS is ok
[2025-11-26 08:04:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 08:04:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 08:04:39] Further information can be found at the LHC@home message board.
[2025-11-26 08:04:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 08:04:39] Checking for apptainer binary...
[2025-11-26 08:04:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 08:04:39] Running /usr/bin/apptainer --version
[2025-11-26 08:04:39] apptainer version 1.4.1-1.1
[2025-11-26 08:04:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 08:04:39] itA179
[2025-11-26 08:04:39] apptainer works
[2025-11-26 08:04:39] Set ATHENA_PROC_NUMBER=3
[2025-11-26 08:04:39] Set ATHENA_CORE_NUMBER=3
[2025-11-26 08:04:39] Starting ATLAS job with PandaID=6895339099
[2025-11-26 08:04:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 16:12:25]  *** The last 200 lines of the pilot log: ***
[2025-11-26 16:12:25] 2025-11-26 15:11:32,410 | INFO     | monitor loop #2226: job 0:6895339099 is in state 'finished'
[2025-11-26 16:12:25] 2025-11-26 15:11:32,411 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:12:25] 2025-11-26 15:11:32,512 | INFO     | time since job start (29205s) is within the limit (172800.0s)
[2025-11-26 16:12:25] 2025-11-26 15:11:32,712 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 16:12:25] 2025-11-26 15:11:32,713 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3797.566416666666
[2025-11-26 16:12:25] 2025-11-26 15:11:32,714 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6895339099/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 16:12:25] 2025-11-26 15:11:32,715 | INFO     | extracted standard info from prmon json
[2025-11-26 16:12:25] 2025-11-26 15:11:32,715 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 16:12:25] 2025-11-26 15:11:32,715 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 16:12:25] 2025-11-26 15:11:32,718 | INFO     | fitting pss+swap vs Time
[2025-11-26 16:12:25] 2025-11-26 15:11:32,718 | INFO     | sum of square deviations: 34078704080.0
[2025-11-26 16:12:25] 2025-11-26 15:11:32,720 | INFO     | sum of deviations: 224425659065.00006
[2025-11-26 16:12:25] 2025-11-26 15:11:32,720 | INFO     | mean x: 1764155285.0
[2025-11-26 16:12:25] 2025-11-26 15:11:32,720 | INFO     | mean y: 2205606.9123173277
[2025-11-26 16:12:25] 2025-11-26 15:11:32,720 | INFO     | intersect: -11615657314.15707
[2025-11-26 16:12:25] 2025-11-26 15:11:32,720 | INFO     | chi2: 3.4032232248813172
[2025-11-26 16:12:25] 2025-11-26 15:11:32,720 | INFO     | sum of square deviations: 33022619162.5
[2025-11-26 16:12:25] 2025-11-26 15:11:32,722 | INFO     | sum of deviations: 272992310854.49997
[2025-11-26 16:12:25] 2025-11-26 15:11:32,722 | INFO     | mean x: 1764155132.5
[2025-11-26 16:12:25] 2025-11-26 15:11:32,722 | INFO     | mean y: 2212584.7784810127
[2025-11-26 16:12:25] 2025-11-26 15:11:32,722 | INFO     | intersect: -14581754360.94157
[2025-11-26 16:12:25] 2025-11-26 15:11:32,722 | INFO     | chi2: 2.529232908941214
[2025-11-26 16:12:25] 2025-11-26 15:11:32,722 | INFO     | current chi2=2.529232908941214 (change=25.681251513279218 %)
[2025-11-26 16:12:25] 2025-11-26 15:11:32,723 | INFO     | sum of square deviations: 31988581170.0
[2025-11-26 16:12:25] 2025-11-26 15:11:32,724 | INFO     | sum of deviations: 267474853931.00003
[2025-11-26 16:12:25] 2025-11-26 15:11:32,724 | INFO     | mean x: 1764154980.0
[2025-11-26 16:12:25] 2025-11-26 15:11:32,724 | INFO     | mean y: 2211771.074626866
[2025-11-26 16:12:25] 2025-11-26 15:11:32,724 | INFO     | intersect: -14748898729.24602
[2025-11-26 16:12:25] 2025-11-26 15:11:32,725 | INFO     | chi2: 2.529054222749639
[2025-11-26 16:12:25] 2025-11-26 15:11:32,725 | INFO     | current chi2=2.529054222749639 (change=0.007064837364065835 %)
[2025-11-26 16:12:25] 2025-11-26 15:11:32,725 | INFO     | right removable region: 468
[2025-11-26 16:12:25] 2025-11-26 15:11:32,725 | INFO     | sum of square deviations: 33022619162.5
[2025-11-26 16:12:25] 2025-11-26 15:11:32,727 | INFO     | sum of deviations: 122556133767.00002
[2025-11-26 16:12:25] 2025-11-26 15:11:32,727 | INFO     | mean x: 1764155437.5
[2025-11-26 16:12:25] 2025-11-26 15:11:32,727 | INFO     | mean y: 2220298.3122362867
[2025-11-26 16:12:25] 2025-11-26 15:11:32,727 | INFO     | intersect: -6545051700.922553
[2025-11-26 16:12:25] 2025-11-26 15:11:32,727 | INFO     | chi2: 1.2573485683919727
[2025-11-26 16:12:25] 2025-11-26 15:11:32,727 | INFO     | current chi2=1.2573485683919727 (change=63.054184656493675 %)
[2025-11-26 16:12:25] 2025-11-26 15:11:32,727 | INFO     | sum of square deviations: 31988581170.0
[2025-11-26 16:12:25] 2025-11-26 15:11:32,729 | INFO     | sum of deviations: 91699807452.0
[2025-11-26 16:12:25] 2025-11-26 15:11:32,729 | INFO     | mean x: 1764155590.0
[2025-11-26 16:12:25] 2025-11-26 15:11:32,729 | INFO     | mean y: 2224830.2707889127
[2025-11-26 16:12:25] 2025-11-26 15:11:32,729 | INFO     | intersect: -5054977521.363535
[2025-11-26 16:12:25] 2025-11-26 15:11:32,729 | INFO     | chi2: 0.9497493316929286
[2025-11-26 16:12:25] 2025-11-26 15:11:32,729 | INFO     | current chi2=0.9497493316929286 (change=24.46411794085341 %)
[2025-11-26 16:12:25] 2025-11-26 15:11:32,729 | INFO     | left removable region: 20
[2025-11-26 16:12:25] 2025-11-26 15:11:32,729 | INFO     | sum of square deviations: 27881125552.0
[2025-11-26 16:12:25] 2025-11-26 15:11:32,731 | INFO     | sum of deviations: 112735738002.5
[2025-11-26 16:12:25] 2025-11-26 15:11:32,731 | INFO     | mean x: 1764155559.5
[2025-11-26 16:12:25] 2025-11-26 15:11:32,731 | INFO     | mean y: 2235108.234375
[2025-11-26 16:12:25] 2025-11-26 15:11:32,731 | INFO     | intersect: -7131027090.256004
[2025-11-26 16:12:25] 2025-11-26 15:11:32,731 | INFO     | chi2: 0.04701800452756044
[2025-11-26 16:12:25] 2025-11-26 15:11:32,731 | INFO     | current memory leak: 4.04 B/s (using 448 data points, chi2=0.05)
[2025-11-26 16:12:25] 2025-11-26 15:11:32,732 | INFO     | could have reported an average CPU frequency of 3914 MHz (20 samples)
[2025-11-26 16:12:25] 2025-11-26 15:11:32,732 | INFO     | ..............................
[2025-11-26 16:12:25] 2025-11-26 15:11:32,732 | INFO     | . Timing measurements:
[2025-11-26 16:12:25] 2025-11-26 15:11:32,732 | INFO     | . get job = 0 s
[2025-11-26 16:12:25] 2025-11-26 15:11:32,732 | INFO     | . initial setup = 1 s
[2025-11-26 16:12:25] 2025-11-26 15:11:32,732 | INFO     | . payload setup = 3 s
[2025-11-26 16:12:25] 2025-11-26 15:11:32,732 | INFO     | . stage-in = 0 s
[2025-11-26 16:12:25] 2025-11-26 15:11:32,732 | INFO     | . payload execution = 29181 s
[2025-11-26 16:12:25] 2025-11-26 15:11:32,732 | INFO     | . stage-out = 1 s
[2025-11-26 16:12:25] 2025-11-26 15:11:32,732 | INFO     | . log creation = 0 s
[2025-11-26 16:12:25] 2025-11-26 15:11:32,732 | INFO     | ..............................
[2025-11-26 16:12:25] 2025-11-26 15:11:32,761 | INFO     | 
[2025-11-26 16:12:25] 2025-11-26 15:11:32,762 | INFO     | job summary report
[2025-11-26 16:12:25] 2025-11-26 15:11:32,762 | INFO     | --------------------------------------------------
[2025-11-26 16:12:25] 2025-11-26 15:11:32,762 | INFO     | PanDA job id: 6895339099
[2025-11-26 16:12:25] 2025-11-26 15:11:32,762 | INFO     | task id: 47556137
[2025-11-26 16:12:25] 2025-11-26 15:11:32,762 | INFO     | errors: (none)
[2025-11-26 16:12:25] 2025-11-26 15:11:32,762 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 16:12:25] 2025-11-26 15:11:32,762 | INFO     | pilot state: finished 
[2025-11-26 16:12:25] 2025-11-26 15:11:32,762 | INFO     | transexitcode: 0
[2025-11-26 16:12:25] 2025-11-26 15:11:32,762 | INFO     | exeerrorcode: 0
[2025-11-26 16:12:25] 2025-11-26 15:11:32,762 | INFO     | exeerrordiag: 
[2025-11-26 16:12:25] 2025-11-26 15:11:32,762 | INFO     | exitcode: 0
[2025-11-26 16:12:25] 2025-11-26 15:11:32,762 | INFO     | exitmsg: OK
[2025-11-26 16:12:25] 2025-11-26 15:11:32,762 | INFO     | cpuconsumptiontime: 86228 s
[2025-11-26 16:12:25] 2025-11-26 15:11:32,762 | INFO     | nevents: 1000
[2025-11-26 16:12:25] 2025-11-26 15:11:32,762 | INFO     | neventsw: 0
[2025-11-26 16:12:25] 2025-11-26 15:11:32,762 | INFO     | pid: 4001906
[2025-11-26 16:12:25] 2025-11-26 15:11:32,762 | INFO     | pgrp: 4001906
[2025-11-26 16:12:25] 2025-11-26 15:11:32,762 | INFO     | corecount: 3
[2025-11-26 16:12:25] 2025-11-26 15:11:32,762 | INFO     | event service: False
[2025-11-26 16:12:25] 2025-11-26 15:11:32,762 | INFO     | sizes: {0: 2284267, 2: 2284529, 11: 2284557, 29188: 2323602, 29190: 2332658, 29193: 2332848}
[2025-11-26 16:12:25] 2025-11-26 15:11:32,762 | INFO     | --------------------------------------------------
[2025-11-26 16:12:25] 2025-11-26 15:11:32,762 | INFO     | 
[2025-11-26 16:12:25] 2025-11-26 15:11:32,762 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-11-26 16:12:25] 2025-11-26 15:11:32,774 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 16:12:25] 2025-11-26 15:11:32,774 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 16:12:25] 2025-11-26 15:11:32,774 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 16:12:25] 2025-11-26 15:11:32,774 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 16:12:25] 2025-11-26 15:11:32,774 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 16:12:25] 2025-11-26 15:11:32,774 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 16:12:25] 2025-11-26 15:11:32,774 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 16:12:25] 2025-11-26 15:11:32,774 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 16:12:25] 2025-11-26 15:11:32,774 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 16:12:25] 2025-11-26 15:11:32,774 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 16:12:25] 2025-11-26 15:11:32,774 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 16:12:25] 2025-11-26 15:11:32,774 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 16:12:25] 2025-11-26 15:11:32,774 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 16:12:25] 2025-11-26 15:11:32,774 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 16:12:25] 2025-11-26 15:11:32,774 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 16:12:25] 2025-11-26 15:11:32,774 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 16:12:25] 2025-11-26 15:11:32,774 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 16:12:25] 2025-11-26 15:11:32,774 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 16:12:25] 2025-11-26 15:11:32,774 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 16:12:25] 2025-11-26 15:11:32,774 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 16:12:25] 2025-11-26 15:11:32,774 | INFO     | job 6895339099 has completed (purged errors)
[2025-11-26 16:12:25] 2025-11-26 15:11:32,774 | INFO     | overall cleanup function is called
[2025-11-26 16:12:25] 2025-11-26 15:11:33,574 | INFO     | PID=3995457 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 16:12:25] 2025-11-26 15:11:33,783 | INFO     | --- collectZombieJob: --- 10, [4001906]
[2025-11-26 16:12:25] 2025-11-26 15:11:33,783 | INFO     | zombie collector waiting for pid 4001906
[2025-11-26 16:12:25] 2025-11-26 15:11:33,783 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 16:12:25] 2025-11-26 15:11:33,783 | INFO     | collected zombie processes
[2025-11-26 16:12:25] 2025-11-26 15:11:33,783 | INFO     | will attempt to kill all subprocesses of pid=4001906
[2025-11-26 16:12:25] 2025-11-26 15:11:33,827 | INFO     | process IDs to be killed: [4001906] (in reverse order)
[2025-11-26 16:12:25] 2025-11-26 15:11:33,850 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 16:12:25] 2025-11-26 15:11:33,851 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 16:12:25] 2025-11-26 15:11:33,852 | INFO     | did not find any defunct processes belonging to 4001906
[2025-11-26 16:12:25] 2025-11-26 15:11:33,853 | INFO     | did not find any defunct processes belonging to 4001906
[2025-11-26 16:12:25] 2025-11-26 15:11:33,853 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 16:12:25] 2025-11-26 15:11:33,854 | INFO     | ready for new job
[2025-11-26 16:12:25] 2025-11-26 15:11:33,854 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 16:12:25] 2025-11-26 15:11:33,855 | INFO     | ***************************************
[2025-11-26 16:12:25] 2025-11-26 15:11:33,855 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 16:12:25] 2025-11-26 15:11:33,855 | INFO     | ***************************************
[2025-11-26 16:12:25] 2025-11-26 15:11:33,855 | INFO     | 
[2025-11-26 16:12:25] 2025-11-26 15:11:33,855 | INFO     | architecture information:
[2025-11-26 16:12:25] 2025-11-26 15:11:33,855 | INFO     | executing command: cat /etc/os-release
[2025-11-26 16:12:25] 2025-11-26 15:11:33,864 | INFO     | cat /etc/os-release:
[2025-11-26 16:12:25] NAME="CentOS Linux"
[2025-11-26 16:12:25] VERSION="7 (Core)"
[2025-11-26 16:12:25] ID="centos"
[2025-11-26 16:12:25] ID_LIKE="rhel fedora"
[2025-11-26 16:12:25] VERSION_ID="7"
[2025-11-26 16:12:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 16:12:25] ANSI_COLOR="0;31"
[2025-11-26 16:12:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 16:12:25] HOME_URL="https://www.centos.org/"
[2025-11-26 16:12:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 16:12:25] 
[2025-11-26 16:12:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 16:12:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 16:12:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 16:12:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 16:12:25] 
[2025-11-26 16:12:25] 2025-11-26 15:11:33,864 | INFO     | ***************************************
[2025-11-26 16:12:25] 2025-11-26 15:11:34,367 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 16:12:25] 2025-11-26 15:11:34,379 | INFO     | sufficient remaining disk space (125808148480 B)
[2025-11-26 16:12:25] 2025-11-26 15:11:34,379 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 16:12:25] 2025-11-26 15:11:34,379 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 16:12:25] 2025-11-26 15:11:34,379 | INFO     | update_server=False
[2025-11-26 16:12:25] 2025-11-26 15:11:34,379 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 16:12:25] 2025-11-26 15:11:34,380 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:12:25] 2025-11-26 15:11:34,380 | INFO     | aborting loop
[2025-11-26 16:12:25] 2025-11-26 15:11:34,380 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-26 16:12:25] 2025-11-26 15:11:34,380 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:12:25] 2025-11-26 15:11:34,380 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 16:12:25] 2025-11-26 15:11:34,380 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 16:12:25] 2025-11-26 15:11:34,380 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 16:12:25] 2025-11-26 15:11:35,360 | INFO     | all data control threads have been joined
[2025-11-26 16:12:25] 2025-11-26 15:11:35,385 | INFO     | [job] retrieve thread has finished
[2025-11-26 16:12:25] 2025-11-26 15:11:35,385 | INFO     | [job] job monitor thread has finished
[2025-11-26 16:12:25] 2025-11-26 15:11:35,385 | INFO     | [job] queue monitor thread has finished
[2025-11-26 16:12:25] 2025-11-26 15:11:35,433 | INFO     | [payload] failed_post thread has finished
[2025-11-26 16:12:25] 2025-11-26 15:11:35,515 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 16:12:25] 2025-11-26 15:11:35,766 | INFO     | all job control threads have been joined
[2025-11-26 16:12:25] 2025-11-26 15:11:35,785 | INFO     | [data] copytool_in thread has finished
[2025-11-26 16:12:25] 2025-11-26 15:11:35,868 | INFO     | all payload control threads have been joined
[2025-11-26 16:12:25] 2025-11-26 15:11:36,039 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 16:12:25] 2025-11-26 15:11:36,125 | INFO     | [job] validate thread has finished
[2025-11-26 16:12:25] 2025-11-26 15:11:36,289 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 16:12:25] 2025-11-26 15:11:36,307 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 16:12:25] 2025-11-26 15:11:36,315 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 16:12:25] 2025-11-26 15:11:36,366 | INFO     | [data] control thread has finished
[2025-11-26 16:12:25] 2025-11-26 15:11:36,498 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 16:12:25] 2025-11-26 15:11:36,772 | INFO     | [job] control thread has finished
[2025-11-26 16:12:25] 2025-11-26 15:11:36,818 | INFO     | [payload] validate_post thread has finished
[2025-11-26 16:12:25] 2025-11-26 15:11:36,872 | INFO     | [payload] control thread has finished
[2025-11-26 16:12:25] 2025-11-26 15:11:37,521 | INFO     | [data] copytool_out thread has finished
[2025-11-26 16:12:25] 2025-11-26 15:11:40,046 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 16:12:25] 2025-11-26 15:12:19,319 | INFO     | [monitor] cgroup control has ended
[2025-11-26 16:12:25] 2025-11-26 15:12:20,325 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140175472891712)>', '<ExcThread(monitor, started 140174847637248)>']
[2025-11-26 16:12:25] 2025-11-26 15:12:20,612 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 16:12:25] 2025-11-26 15:12:20,613 | INFO     | [monitor] control thread has ended
[2025-11-26 16:12:25] 2025-11-26 15:12:25,350 | INFO     | all workflow threads have been joined
[2025-11-26 16:12:25] 2025-11-26 15:12:25,350 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 16:12:25] 2025-11-26 15:12:25,351 | INFO     | traces error code: 0
[2025-11-26 16:12:25] 2025-11-26 15:12:25,351 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 16:12:25] 2025-11-26 15:12:25,399 [wrapper] ==== pilot stdout END ====
[2025-11-26 16:12:25] 2025-11-26 15:12:25,401 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 16:12:25] 2025-11-26 15:12:25,404 [wrapper] pilotpid: 3995457
[2025-11-26 16:12:25] 2025-11-26 15:12:25,406 [wrapper] Pilot exit status: 0
[2025-11-26 16:12:25] 2025-11-26 15:12:25,413 [wrapper] pandaids: 6895339099 6895339099
[2025-11-26 16:12:25] 2025-11-26 15:12:25,429 [wrapper] cleanup supervisor_pilot 4053371 3995458
[2025-11-26 16:12:25] 2025-11-26 15:12:25,432 [wrapper] Test setup, not cleaning
[2025-11-26 16:12:25] 2025-11-26 15:12:25,434 [wrapper] apfmon messages muted
[2025-11-26 16:12:25] 2025-11-26 15:12:25,436 [wrapper] ==== wrapper stdout END ====
[2025-11-26 16:12:25] 2025-11-26 15:12:25,438 [wrapper] ==== wrapper stderr END ====
[2025-11-26 16:12:25]  *** Error codes and diagnostics ***
[2025-11-26 16:12:25]     "exeErrorCode": 0,
[2025-11-26 16:12:25]     "exeErrorDiag": "",
[2025-11-26 16:12:25]     "pilotErrorCode": 0,
[2025-11-26 16:12:25]     "pilotErrorDiag": "",
[2025-11-26 16:12:25]  *** Listing of results directory ***
[2025-11-26 16:12:25] total 1720660
[2025-11-26 16:12:25] drwx------ 5 boinc boinc      4096 Nov  5 18:16 pilot3
[2025-11-26 16:12:25] -rw-r--r-- 1 boinc boinc    576529 Nov 22 10:55 pilot3.tar.gz
[2025-11-26 16:12:25] -rw-r--r-- 1 boinc boinc      5112 Nov 22 11:11 queuedata.json
[2025-11-26 16:12:25] -rwx------ 1 boinc boinc     36292 Nov 22 11:12 runpilot2-wrapper.sh
[2025-11-26 16:12:25] -rw-r--r-- 1 boinc boinc       100 Nov 26 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 16:12:25] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 00:04 run_atlas
[2025-11-26 16:12:25] -rw-r--r-- 1 boinc boinc       105 Nov 26 00:04 job.xml
[2025-11-26 16:12:25] -rw-r--r-- 3 boinc boinc 409944413 Nov 26 00:04 EVNT.47483658._000343.pool.root.1
[2025-11-26 16:12:25] -rw-r--r-- 3 boinc boinc 409944413 Nov 26 00:04 ATLAS.root_0
[2025-11-26 16:12:25] -rw-r--r-- 2 boinc boinc    590102 Nov 26 00:04 input.tar.gz
[2025-11-26 16:12:25] -rw-r--r-- 2 boinc boinc     15847 Nov 26 00:04 start_atlas.sh
[2025-11-26 16:12:25] drwxrwx--x 2 boinc boinc      4096 Nov 26 00:04 shared
[2025-11-26 16:12:25] -rw-r--r-- 1 boinc boinc         0 Nov 26 00:04 boinc_setup_complete
[2025-11-26 16:12:25] -rw-r--r-- 1 boinc boinc         0 Nov 26 00:04 boinc_lockfile
[2025-11-26 16:12:25] -rw-r--r-- 1 boinc boinc      6450 Nov 26 08:04 init_data.xml
[2025-11-26 16:12:25] -rw-r--r-- 1 boinc boinc      2785 Nov 26 08:04 pandaJob.out
[2025-11-26 16:12:25] -rw------- 1 boinc boinc    991877 Nov 26 08:04 agis_schedconf.cvmfs.json
[2025-11-26 16:12:25] -rw-r--r-- 1 boinc boinc       532 Nov 26 16:08 boinc_task_state.xml
[2025-11-26 16:12:25] -rw------- 1 boinc boinc 927571735 Nov 26 16:11 HITS.47556137._003400.pool.root.1
[2025-11-26 16:12:25] -rw------- 1 boinc boinc        96 Nov 26 16:11 pilot_heartbeat.json
[2025-11-26 16:12:25] -rw------- 1 boinc boinc      1038 Nov 26 16:11 memory_monitor_summary.json
[2025-11-26 16:12:25] -rw------- 1 boinc boinc   1516240 Nov 26 16:11 agis_ddmendpoints.agis.ALL.json
[2025-11-26 16:12:25] -rw------- 1 boinc boinc   1173596 Nov 26 16:11 log.47556137._003400.job.log.tgz.1
[2025-11-26 16:12:25] -rw------- 1 boinc boinc      8567 Nov 26 16:11 heartbeat.json
[2025-11-26 16:12:25] -rw-r--r-- 1 boinc boinc        29 Nov 26 16:12 wrapper_checkpoint.txt
[2025-11-26 16:12:25] -rw-r--r-- 1 boinc boinc      8192 Nov 26 16:12 boinc_mmap_file
[2025-11-26 16:12:25] -rw------- 1 boinc boinc      4556 Nov 26 16:12 pilotlog.txt
[2025-11-26 16:12:25] -rw------- 1 boinc boinc   4111663 Nov 26 16:12 log.47556137._003400.job.log.1
[2025-11-26 16:12:25] -rw------- 1 boinc boinc       353 Nov 26 16:12 output.list
[2025-11-26 16:12:25] -rw-r--r-- 1 boinc boinc       620 Nov 26 16:12 runtime_log
[2025-11-26 16:12:25] -rw------- 1 boinc boinc   5304320 Nov 26 16:12 result.tar.gz
[2025-11-26 16:12:25] -rw-r--r-- 1 boinc boinc      8983 Nov 26 16:12 runtime_log.err
[2025-11-26 16:12:25] -rw------- 1 boinc boinc       790 Nov 26 16:12 QeOODmKmzg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmY4HKDmzfRuXo.diag
[2025-11-26 16:12:25] -rw-r--r-- 1 boinc boinc     23383 Nov 26 16:12 stderr.txt
[2025-11-26 16:12:25] HITS file was successfully produced:
[2025-11-26 16:12:25] -rw------- 1 boinc boinc 927571735 Nov 26 16:11 shared/HITS.pool.root.1
[2025-11-26 16:12:25]  *** Contents of shared directory: ***
[2025-11-26 16:12:25] total 1311956
[2025-11-26 16:12:25] -rw-r--r-- 3 boinc boinc 409944413 Nov 26 00:04 ATLAS.root_0
[2025-11-26 16:12:25] -rw-r--r-- 2 boinc boinc    590102 Nov 26 00:04 input.tar.gz
[2025-11-26 16:12:25] -rw-r--r-- 2 boinc boinc     15847 Nov 26 00:04 start_atlas.sh
[2025-11-26 16:12:25] -rw------- 1 boinc boinc 927571735 Nov 26 16:11 HITS.pool.root.1
[2025-11-26 16:12:25] -rw------- 1 boinc boinc   5304320 Nov 26 16:12 result.tar.gz
16:12:27 (3991257): run_atlas exited; CPU time 86256.512914
16:12:27 (3991257): called boinc_finish(0)

</stderr_txt>
]]>

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