Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:40:39 (3416408): wrapper (7.7.26015): starting
15:40:39 (3416408): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 15:40:39] Arguments: --nthreads 8
[2025-11-22 15:40:39] Threads: 8
[2025-11-22 15:40:39] Checking for CVMFS
[2025-11-22 15:40:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 15:40:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 15:40:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 15:40:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 15:40:40] 2.13.2.0 6573 27611 291416 153184 1 397 29644657 40960000 16396 16776704 0 58729050 99.650 49466120 38408 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 15:40:40] CVMFS is ok
[2025-11-22 15:40:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 15:40:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 15:40:40] Further information can be found at the LHC@home message board.
[2025-11-22 15:40:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 15:40:40] Checking for apptainer binary...
[2025-11-22 15:40:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 15:40:40] Running /usr/bin/apptainer --version
[2025-11-22 15:40:40] apptainer version 1.4.4-1.el9
[2025-11-22 15:40:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 15:40:41] c-206-35.aglt2.org
[2025-11-22 15:40:41] apptainer works
[2025-11-22 15:40:41] Set ATHENA_PROC_NUMBER=8
[2025-11-22 15:40:41] Set ATHENA_CORE_NUMBER=8
[2025-11-22 15:40:41] Starting ATLAS job with PandaID=6895331269
[2025-11-22 15:40:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 12:51:33]  *** The last 200 lines of the pilot log: ***
[2025-11-23 12:51:33] 2025-11-23 17:50:26,626 | INFO     | job 6895331269 has finished - writing final server update
[2025-11-23 12:51:33] 2025-11-23 17:50:26,626 | INFO     | total number of processed events: 1000 (read)
[2025-11-23 12:51:33] 2025-11-23 17:50:26,627 | INFO     | executing command: lscpu
[2025-11-23 12:51:33] 2025-11-23 17:50:26,681 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-23 12:51:33] 2025-11-23 17:50:27,614 | INFO     | time since job start (76154s) is within the limit (172800.0s)
[2025-11-23 12:51:33] 2025-11-23 17:50:27,979 | INFO     | monitor loop #4728: job 0:6895331269 is in state 'finished'
[2025-11-23 12:51:33] 2025-11-23 17:50:27,979 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 12:51:33] 2025-11-23 17:50:29,621 | INFO     | time since job start (76156s) is within the limit (172800.0s)
[2025-11-23 12:51:33] 2025-11-23 17:50:30,484 | INFO     | monitor loop #4729: job 0:6895331269 is in state 'finished'
[2025-11-23 12:51:33] 2025-11-23 17:50:30,484 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 12:51:33] 2025-11-23 17:50:31,628 | INFO     | time since job start (76158s) is within the limit (172800.0s)
[2025-11-23 12:51:33] 2025-11-23 17:50:32,994 | INFO     | monitor loop #4730: job 0:6895331269 is in state 'finished'
[2025-11-23 12:51:33] 2025-11-23 17:50:32,994 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 12:51:33] 2025-11-23 17:50:33,636 | INFO     | time since job start (76160s) is within the limit (172800.0s)
[2025-11-23 12:51:33] 2025-11-23 17:50:35,498 | INFO     | monitor loop #4731: job 0:6895331269 is in state 'finished'
[2025-11-23 12:51:33] 2025-11-23 17:50:35,498 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 12:51:33] 2025-11-23 17:50:35,644 | INFO     | time since job start (76162s) is within the limit (172800.0s)
[2025-11-23 12:51:33] 2025-11-23 17:50:36,054 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 12:51:33] 2025-11-23 17:50:36,059 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3252.0757656250003
[2025-11-23 12:51:33] 2025-11-23 17:50:36,070 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895331269/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 12:51:33] 2025-11-23 17:50:36,071 | INFO     | extracted standard info from prmon json
[2025-11-23 12:51:33] 2025-11-23 17:50:36,071 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 12:51:33] 2025-11-23 17:50:36,071 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 12:51:33] 2025-11-23 17:50:36,144 | INFO     | fitting pss+swap vs Time
[2025-11-23 12:51:33] 2025-11-23 17:50:36,153 | INFO     | sum of square deviations: 602742122041.9183
[2025-11-23 12:51:33] 2025-11-23 17:50:36,183 | INFO     | sum of deviations: 5315838652294.121
[2025-11-23 12:51:33] 2025-11-23 17:50:36,184 | INFO     | mean x: 1763882171.8669872
[2025-11-23 12:51:33] 2025-11-23 17:50:36,184 | INFO     | mean y: 2894378.7235576925
[2025-11-23 12:51:33] 2025-11-23 17:50:36,184 | INFO     | intersect: -15553531303.852072
[2025-11-23 12:51:33] 2025-11-23 17:50:36,185 | INFO     | chi2: 17.10740413073336
[2025-11-23 12:51:33] 2025-11-23 17:50:36,186 | INFO     | sum of square deviations: 595527669093.7943
[2025-11-23 12:51:33] 2025-11-23 17:50:36,217 | INFO     | sum of deviations: 5770871980669.3
[2025-11-23 12:51:33] 2025-11-23 17:50:36,218 | INFO     | mean x: 1763882019.3765085
[2025-11-23 12:51:33] 2025-11-23 17:50:36,218 | INFO     | mean y: 2903997.441673371
[2025-11-23 12:51:33] 2025-11-23 17:50:36,218 | INFO     | intersect: -17089731409.936996
[2025-11-23 12:51:33] 2025-11-23 17:50:36,219 | INFO     | chi2: 13.487828928165975
[2025-11-23 12:51:33] 2025-11-23 17:50:36,219 | INFO     | current chi2=13.487828928165975 (change=21.15794526689668 %)
[2025-11-23 12:51:33] 2025-11-23 17:50:36,219 | INFO     | right removable region: 1242
[2025-11-23 12:51:33] 2025-11-23 17:50:36,220 | INFO     | sum of square deviations: 595525867153.7941
[2025-11-23 12:51:33] 2025-11-23 17:50:36,255 | INFO     | sum of deviations: 4843692353204.184
[2025-11-23 12:51:33] 2025-11-23 17:50:36,255 | INFO     | mean x: 1763882324.3765085
[2025-11-23 12:51:33] 2025-11-23 17:50:36,255 | INFO     | mean y: 2904355.6363636362
[2025-11-23 12:51:33] 2025-11-23 17:50:36,255 | INFO     | intersect: -14343581326.61883
[2025-11-23 12:51:33] 2025-11-23 17:50:36,256 | INFO     | chi2: 13.420274323840687
[2025-11-23 12:51:33] 2025-11-23 17:50:36,256 | INFO     | current chi2=13.420274323840687 (change=21.552830451165676 %)
[2025-11-23 12:51:33] 2025-11-23 17:50:36,256 | INFO     | left removable region: 10
[2025-11-23 12:51:33] 2025-11-23 17:50:36,257 | INFO     | sum of square deviations: 579855375001.9086
[2025-11-23 12:51:33] 2025-11-23 17:50:36,287 | INFO     | sum of deviations: 4913374021168.84
[2025-11-23 12:51:33] 2025-11-23 17:50:36,287 | INFO     | mean x: 1763882293.8969157
[2025-11-23 12:51:33] 2025-11-23 17:50:36,287 | INFO     | mean y: 2924203.510551948
[2025-11-23 12:51:33] 2025-11-23 17:50:36,287 | INFO     | intersect: -14943239638.127169
[2025-11-23 12:51:33] 2025-11-23 17:50:36,288 | INFO     | chi2: 6.614981732084004
[2025-11-23 12:51:33] 2025-11-23 17:50:36,289 | INFO     | current memory leak: 8.47 B/s (using 1232 data points, chi2=6.61)
[2025-11-23 12:51:33] 2025-11-23 17:50:36,290 | INFO     | could have reported an average CPU frequency of 3251 MHz (45 samples)
[2025-11-23 12:51:33] 2025-11-23 17:50:36,290 | INFO     | ..............................
[2025-11-23 12:51:33] 2025-11-23 17:50:36,290 | INFO     | . Timing measurements:
[2025-11-23 12:51:33] 2025-11-23 17:50:36,290 | INFO     | . get job = 0 s
[2025-11-23 12:51:33] 2025-11-23 17:50:36,290 | INFO     | . initial setup = 2 s
[2025-11-23 12:51:33] 2025-11-23 17:50:36,290 | INFO     | . payload setup = 17 s
[2025-11-23 12:51:33] 2025-11-23 17:50:36,290 | INFO     | . stage-in = 0 s
[2025-11-23 12:51:33] 2025-11-23 17:50:36,290 | INFO     | . payload execution = 76091 s
[2025-11-23 12:51:33] 2025-11-23 17:50:36,290 | INFO     | . stage-out = 3 s
[2025-11-23 12:51:33] 2025-11-23 17:50:36,290 | INFO     | . log creation = 0 s
[2025-11-23 12:51:33] 2025-11-23 17:50:36,291 | INFO     | ..............................
[2025-11-23 12:51:33] 2025-11-23 17:50:36,386 | INFO     | 
[2025-11-23 12:51:33] 2025-11-23 17:50:36,386 | INFO     | job summary report
[2025-11-23 12:51:33] 2025-11-23 17:50:36,386 | INFO     | --------------------------------------------------
[2025-11-23 12:51:33] 2025-11-23 17:50:36,386 | INFO     | PanDA job id: 6895331269
[2025-11-23 12:51:33] 2025-11-23 17:50:36,386 | INFO     | task id: 47556149
[2025-11-23 12:51:33] 2025-11-23 17:50:36,386 | INFO     | errors: (none)
[2025-11-23 12:51:33] 2025-11-23 17:50:36,386 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 12:51:33] 2025-11-23 17:50:36,386 | INFO     | pilot state: finished 
[2025-11-23 12:51:33] 2025-11-23 17:50:36,386 | INFO     | transexitcode: 0
[2025-11-23 12:51:33] 2025-11-23 17:50:36,386 | INFO     | exeerrorcode: 0
[2025-11-23 12:51:33] 2025-11-23 17:50:36,386 | INFO     | exeerrordiag: 
[2025-11-23 12:51:33] 2025-11-23 17:50:36,386 | INFO     | exitcode: 0
[2025-11-23 12:51:33] 2025-11-23 17:50:36,387 | INFO     | exitmsg: OK
[2025-11-23 12:51:33] 2025-11-23 17:50:36,387 | INFO     | cpuconsumptiontime: 201396 s
[2025-11-23 12:51:33] 2025-11-23 17:50:36,387 | INFO     | nevents: 1000
[2025-11-23 12:51:33] 2025-11-23 17:50:36,387 | INFO     | neventsw: 0
[2025-11-23 12:51:33] 2025-11-23 17:50:36,387 | INFO     | pid: 3428157
[2025-11-23 12:51:33] 2025-11-23 17:50:36,387 | INFO     | pgrp: 3428157
[2025-11-23 12:51:33] 2025-11-23 17:50:36,387 | INFO     | corecount: 8
[2025-11-23 12:51:33] 2025-11-23 17:50:36,387 | INFO     | event service: False
[2025-11-23 12:51:33] 2025-11-23 17:50:36,387 | INFO     | sizes: {0: 2298634, 1: 2298833, 11: 2298833, 17: 2299123, 22: 2299151, 76112: 2359401, 76116: 2368395, 76119: 2368451, 76128: 2368697}
[2025-11-23 12:51:33] 2025-11-23 17:50:36,387 | INFO     | --------------------------------------------------
[2025-11-23 12:51:33] 2025-11-23 17:50:36,387 | INFO     | 
[2025-11-23 12:51:33] 2025-11-23 17:50:36,387 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-23 12:51:33] 2025-11-23 17:50:36,407 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 12:51:33] 2025-11-23 17:50:36,408 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 12:51:33] 2025-11-23 17:50:36,408 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 12:51:33] 2025-11-23 17:50:36,408 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 12:51:33] 2025-11-23 17:50:36,408 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 12:51:33] 2025-11-23 17:50:36,408 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 12:51:33] 2025-11-23 17:50:36,408 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 12:51:33] 2025-11-23 17:50:36,408 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 12:51:33] 2025-11-23 17:50:36,408 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 12:51:33] 2025-11-23 17:50:36,408 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 12:51:33] 2025-11-23 17:50:36,408 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 12:51:33] 2025-11-23 17:50:36,408 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 12:51:33] 2025-11-23 17:50:36,408 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 12:51:33] 2025-11-23 17:50:36,409 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 12:51:33] 2025-11-23 17:50:36,409 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 12:51:33] 2025-11-23 17:50:36,409 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 12:51:33] 2025-11-23 17:50:36,409 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 12:51:33] 2025-11-23 17:50:36,409 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 12:51:33] 2025-11-23 17:50:36,409 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 12:51:33] 2025-11-23 17:50:36,409 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 12:51:33] 2025-11-23 17:50:36,409 | INFO     | job 6895331269 has completed (purged errors)
[2025-11-23 12:51:33] 2025-11-23 17:50:36,409 | INFO     | overall cleanup function is called
[2025-11-23 12:51:33] 2025-11-23 17:50:37,427 | INFO     | --- collectZombieJob: --- 10, [3428157]
[2025-11-23 12:51:33] 2025-11-23 17:50:37,427 | INFO     | zombie collector waiting for pid 3428157
[2025-11-23 12:51:33] 2025-11-23 17:50:37,427 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 12:51:33] 2025-11-23 17:50:37,427 | INFO     | collected zombie processes
[2025-11-23 12:51:33] 2025-11-23 17:50:37,427 | INFO     | will attempt to kill all subprocesses of pid=3428157
[2025-11-23 12:51:33] 2025-11-23 17:50:37,762 | INFO     | process IDs to be killed: [3428157] (in reverse order)
[2025-11-23 12:51:33] 2025-11-23 17:50:37,881 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 12:51:33] 2025-11-23 17:50:37,887 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 12:51:33] 2025-11-23 17:50:37,901 | INFO     | did not find any defunct processes belonging to 3428157
[2025-11-23 12:51:33] 2025-11-23 17:50:37,913 | INFO     | did not find any defunct processes belonging to 3428157
[2025-11-23 12:51:33] 2025-11-23 17:50:37,917 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 12:51:33] 2025-11-23 17:50:37,917 | INFO     | ready for new job
[2025-11-23 12:51:33] 2025-11-23 17:50:37,922 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 12:51:33] 2025-11-23 17:50:37,928 | INFO     | ***************************************
[2025-11-23 12:51:33] 2025-11-23 17:50:37,928 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 12:51:33] 2025-11-23 17:50:37,928 | INFO     | ***************************************
[2025-11-23 12:51:33] 2025-11-23 17:50:37,928 | INFO     | 
[2025-11-23 12:51:33] 2025-11-23 17:50:37,932 | INFO     | architecture information:
[2025-11-23 12:51:33] 2025-11-23 17:50:37,932 | INFO     | executing command: cat /etc/os-release
[2025-11-23 12:51:33] 2025-11-23 17:50:37,947 | INFO     | cat /etc/os-release:
[2025-11-23 12:51:33] NAME="CentOS Linux"
[2025-11-23 12:51:33] VERSION="7 (Core)"
[2025-11-23 12:51:33] ID="centos"
[2025-11-23 12:51:33] ID_LIKE="rhel fedora"
[2025-11-23 12:51:33] VERSION_ID="7"
[2025-11-23 12:51:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 12:51:33] ANSI_COLOR="0;31"
[2025-11-23 12:51:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 12:51:33] HOME_URL="https://www.centos.org/"
[2025-11-23 12:51:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 12:51:33] 
[2025-11-23 12:51:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 12:51:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 12:51:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 12:51:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 12:51:33] 
[2025-11-23 12:51:33] 2025-11-23 17:50:37,948 | INFO     | ***************************************
[2025-11-23 12:51:33] 2025-11-23 17:50:38,467 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-23 12:51:33] 2025-11-23 17:50:38,602 | INFO     | sufficient remaining disk space (80321970176 B)
[2025-11-23 12:51:33] 2025-11-23 17:50:38,602 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 12:51:33] 2025-11-23 17:50:38,603 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 12:51:33] 2025-11-23 17:50:38,603 | INFO     | update_server=False
[2025-11-23 12:51:33] 2025-11-23 17:50:38,603 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 12:51:33] 2025-11-23 17:50:39,019 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 12:51:33] 2025-11-23 17:50:39,019 | INFO     | aborting loop
[2025-11-23 12:51:33] 2025-11-23 17:50:39,075 | INFO     | all data control threads have been joined
[2025-11-23 12:51:33] 2025-11-23 17:50:39,465 | INFO     | all job control threads have been joined
[2025-11-23 12:51:33] 2025-11-23 17:50:39,608 | INFO     | [job] retrieve thread has finished
[2025-11-23 12:51:33] 2025-11-23 17:50:39,723 | INFO     | all payload control threads have been joined
[2025-11-23 12:51:33] 2025-11-23 17:50:39,781 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 12:51:33] 2025-11-23 17:50:40,025 | INFO     | [job] job monitor thread has finished
[2025-11-23 12:51:33] 2025-11-23 17:50:40,025 | INFO     | [data] copytool_in thread has finished
[2025-11-23 12:51:33] 2025-11-23 17:50:40,063 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 12:51:33] 2025-11-23 17:50:40,083 | INFO     | [data] control thread has finished
[2025-11-23 12:51:33] 2025-11-23 17:50:40,471 | INFO     | [job] control thread has finished
[2025-11-23 12:51:33] 2025-11-23 17:50:40,479 | INFO     | [payload] validate_post thread has finished
[2025-11-23 12:51:33] 2025-11-23 17:50:40,510 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 12:51:33] 2025-11-23 17:50:40,579 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 12:51:33] 2025-11-23 17:50:40,652 | INFO     | [job] validate thread has finished
[2025-11-23 12:51:33] 2025-11-23 17:50:40,674 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 12:51:33] 2025-11-23 17:50:40,729 | INFO     | [payload] control thread has finished
[2025-11-23 12:51:33] 2025-11-23 17:50:41,182 | INFO     | [payload] failed_post thread has finished
[2025-11-23 12:51:33] 2025-11-23 17:50:41,407 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 12:51:33] 2025-11-23 17:50:41,650 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 12:51:33] 2025-11-23 17:50:41,788 | INFO     | [data] copytool_out thread has finished
[2025-11-23 12:51:33] 2025-11-23 17:50:42,416 | INFO     | [job] queue monitor thread has finished
[2025-11-23 12:51:33] 2025-11-23 17:50:45,661 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 12:51:33] 2025-11-23 17:51:09,169 | INFO     | PID=3420144 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 12:51:33] 2025-11-23 17:51:09,171 | INFO     | .. there are 19 such processes running
[2025-11-23 12:51:33] 2025-11-23 17:51:09,171 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 12:51:33] 2025-11-23 17:51:09,171 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 12:51:33] 2025-11-23 17:51:09,171 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 12:51:33] 2025-11-23 17:51:27,119 | INFO     | [monitor] cgroup control has ended
[2025-11-23 12:51:33] 2025-11-23 17:51:28,091 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140103767992128)>', '<ExcThread(monitor, started 140102881756928)>']
[2025-11-23 12:51:33] 2025-11-23 17:51:28,299 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 12:51:33] 2025-11-23 17:51:28,299 | INFO     | [monitor] control thread has ended
[2025-11-23 12:51:33] 2025-11-23 17:51:33,117 | INFO     | all workflow threads have been joined
[2025-11-23 12:51:33] 2025-11-23 17:51:33,119 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 12:51:33] 2025-11-23 17:51:33,119 | INFO     | traces error code: 0
[2025-11-23 12:51:33] 2025-11-23 17:51:33,119 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 12:51:33] 2025-11-23 17:51:33,231 [wrapper] ==== pilot stdout END ====
[2025-11-23 12:51:33] 2025-11-23 17:51:33,233 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 12:51:33] 2025-11-23 17:51:33,235 [wrapper] pilotpid: 3420144
[2025-11-23 12:51:33] 2025-11-23 17:51:33,238 [wrapper] Pilot exit status: 0
[2025-11-23 12:51:33] 2025-11-23 17:51:33,262 [wrapper] pandaids: 6895331269
[2025-11-23 12:51:33] 2025-11-23 17:51:33,331 [wrapper] cleanup supervisor_pilot 2082902 3420145
[2025-11-23 12:51:33] 2025-11-23 17:51:33,334 [wrapper] Test setup, not cleaning
[2025-11-23 12:51:33] 2025-11-23 17:51:33,336 [wrapper] apfmon messages muted
[2025-11-23 12:51:33] 2025-11-23 17:51:33,338 [wrapper] ==== wrapper stdout END ====
[2025-11-23 12:51:33] 2025-11-23 17:51:33,340 [wrapper] ==== wrapper stderr END ====
[2025-11-23 12:51:33]  *** Error codes and diagnostics ***
[2025-11-23 12:51:33]     "exeErrorCode": 0,
[2025-11-23 12:51:33]     "exeErrorDiag": "",
[2025-11-23 12:51:33]     "pilotErrorCode": 0,
[2025-11-23 12:51:33]     "pilotErrorDiag": "",
[2025-11-23 12:51:33]  *** Listing of results directory ***
[2025-11-23 12:51:33] total 1319448
[2025-11-23 12:51:33] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 18:06 pilot3.tar.gz
[2025-11-23 12:51:33] -rwx------. 1 boincer umatlas     36292 Nov 21 18:25 runpilot2-wrapper.sh
[2025-11-23 12:51:33] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 18:25 queuedata.json
[2025-11-23 12:51:33] -rw-r--r--. 1 boincer umatlas       100 Nov 22 15:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 12:51:33] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 15:40 run_atlas
[2025-11-23 12:51:33] -rw-r--r--. 1 boincer umatlas       105 Nov 22 15:40 job.xml
[2025-11-23 12:51:33] -rw-r--r--. 2 boincer umatlas 408230419 Nov 22 15:40 EVNT.47483658._001047.pool.root.1
[2025-11-23 12:51:33] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 15:40 start_atlas.sh
[2025-11-23 12:51:33] drwxrwx--x. 2 boincer umatlas      4096 Nov 22 15:40 shared
[2025-11-23 12:51:33] -rw-r--r--. 2 boincer umatlas    590100 Nov 22 15:40 input.tar.gz
[2025-11-23 12:51:33] -rw-r--r--. 1 boincer umatlas         0 Nov 22 15:40 boinc_lockfile
[2025-11-23 12:51:33] -rw-r--r--. 1 boincer umatlas      2785 Nov 22 15:40 pandaJob.out
[2025-11-23 12:51:33] -rw-------. 1 boincer umatlas        57 Nov 22 15:40 setup.sh.local
[2025-11-23 12:51:33] -rw-------. 1 boincer umatlas    989768 Nov 22 15:41 agis_schedconf.cvmfs.json
[2025-11-23 12:51:33] drwx------. 5 boincer umatlas      4096 Nov 22 15:41 pilot3
[2025-11-23 12:51:33] -rw-r--r--. 1 boincer umatlas       533 Nov 23 12:35 boinc_task_state.xml
[2025-11-23 12:51:33] -rw-r--r--. 1 boincer umatlas      6904 Nov 23 12:46 init_data.xml
[2025-11-23 12:51:33] -rw-------. 1 boincer umatlas 914545398 Nov 23 12:49 HITS.47556149._000334.pool.root.1
[2025-11-23 12:51:33] -rw-------. 1 boincer umatlas      1051 Nov 23 12:50 memory_monitor_summary.json
[2025-11-23 12:51:33] -rw-------. 1 boincer umatlas        95 Nov 23 12:50 pilot_heartbeat.json
[2025-11-23 12:51:33] -rw-------. 1 boincer umatlas   1526164 Nov 23 12:50 agis_ddmendpoints.agis.ALL.json
[2025-11-23 12:51:33] -rw-------. 1 boincer umatlas   2353324 Nov 23 12:50 log.47556149._000334.job.log.tgz.1
[2025-11-23 12:51:33] -rw-------. 1 boincer umatlas      8578 Nov 23 12:50 heartbeat.json
[2025-11-23 12:51:33] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 12:51 boinc_mmap_file
[2025-11-23 12:51:33] -rw-r--r--. 1 boincer umatlas        29 Nov 23 12:51 wrapper_checkpoint.txt
[2025-11-23 12:51:33] -rw-------. 1 boincer umatlas      4824 Nov 23 12:51 pilotlog.txt
[2025-11-23 12:51:33] -rw-------. 1 boincer umatlas   9853608 Nov 23 12:51 log.47556149._000334.job.log.1
[2025-11-23 12:51:33] -rw-------. 1 boincer umatlas       353 Nov 23 12:51 output.list
[2025-11-23 12:51:33] -rw-r--r--. 1 boincer umatlas       620 Nov 23 12:51 runtime_log
[2025-11-23 12:51:33] -rw-------. 1 boincer umatlas  12226560 Nov 23 12:51 result.tar.gz
[2025-11-23 12:51:33] -rw-r--r--. 1 boincer umatlas      9343 Nov 23 12:51 runtime_log.err
[2025-11-23 12:51:33] -rw-------. 1 boincer umatlas       660 Nov 23 12:51 PeHNDmSgpg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9lJKDmMTmc1n.diag
[2025-11-23 12:51:33] -rw-r--r--. 1 boincer umatlas     21813 Nov 23 12:51 stderr.txt
[2025-11-23 12:51:33] HITS file was successfully produced:
[2025-11-23 12:51:33] -rw-------. 1 boincer umatlas 914545398 Nov 23 12:49 shared/HITS.pool.root.1
[2025-11-23 12:51:33]  *** Contents of shared directory: ***
[2025-11-23 12:51:33] total 1304320
[2025-11-23 12:51:33] -rw-r--r--. 2 boincer umatlas 408230419 Nov 22 15:40 ATLAS.root_0
[2025-11-23 12:51:33] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 15:40 start_atlas.sh
[2025-11-23 12:51:33] -rw-r--r--. 2 boincer umatlas    590100 Nov 22 15:40 input.tar.gz
[2025-11-23 12:51:33] -rw-------. 1 boincer umatlas 914545398 Nov 23 12:49 HITS.pool.root.1
[2025-11-23 12:51:33] -rw-------. 1 boincer umatlas  12226560 Nov 23 12:51 result.tar.gz
12:51:34 (3416408): run_atlas exited; CPU time 201175.335750
12:51:34 (3416408): called boinc_finish(0)

</stderr_txt>
]]>

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