Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:08:13 (1402440): wrapper (7.7.26015): starting
13:08:13 (1402440): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 13:08:13] Arguments: --nthreads 12
[2025-11-22 13:08:13] Threads: 12
[2025-11-22 13:08:13] Checking for CVMFS
[2025-11-22 13:08:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 13:08:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 13:08:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 13:08:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 13:08:14] 2.11.5.0 2718463 22851 234788 153184 3 429 40039825 45568000 26472 130560 0 147328816 99.789 97151587 20439 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-22 13:08:14] CVMFS is ok
[2025-11-22 13:08:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 13:08:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 13:08:14] Further information can be found at the LHC@home message board.
[2025-11-22 13:08:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 13:08:14] Checking for apptainer binary...
[2025-11-22 13:08:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 13:08:14] Running /usr/bin/apptainer --version
[2025-11-22 13:08:14] apptainer version 1.4.1-1.el9
[2025-11-22 13:08:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 13:08:15] wns0043.triumf.lcg
[2025-11-22 13:08:15] apptainer works
[2025-11-22 13:08:15] Set ATHENA_PROC_NUMBER=12
[2025-11-22 13:08:15] Set ATHENA_CORE_NUMBER=12
[2025-11-22 13:08:15] Starting ATLAS job with PandaID=6895339082
[2025-11-22 13:08:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 13:13:53]  *** The last 200 lines of the pilot log: ***
[2025-11-22 13:13:53] 2025-11-22 21:13:19,335 | WARNING  | wrong length of table data, x=[1763845761.0, 1763845822.0], y=[798.0, 812961.0] (must be same and length>=4)
[2025-11-22 13:13:53] 2025-11-22 21:13:19,336 | INFO     | could have reported an average CPU frequency of 1507 MHz (4 samples)
[2025-11-22 13:13:53] 2025-11-22 21:13:19,336 | INFO     | ..............................
[2025-11-22 13:13:53] 2025-11-22 21:13:19,336 | INFO     | . Timing measurements:
[2025-11-22 13:13:53] 2025-11-22 21:13:19,336 | INFO     | . get job = 0 s
[2025-11-22 13:13:53] 2025-11-22 21:13:19,336 | INFO     | . initial setup = 3 s
[2025-11-22 13:13:53] 2025-11-22 21:13:19,337 | INFO     | . payload setup = 13 s
[2025-11-22 13:13:53] 2025-11-22 21:13:19,337 | INFO     | . stage-in = 0 s
[2025-11-22 13:13:53] 2025-11-22 21:13:19,337 | INFO     | . payload execution = 120 s
[2025-11-22 13:13:53] 2025-11-22 21:13:19,337 | INFO     | . stage-out = 0 s
[2025-11-22 13:13:53] 2025-11-22 21:13:19,337 | INFO     | . log creation = 0 s
[2025-11-22 13:13:53] 2025-11-22 21:13:19,337 | INFO     | ..............................
[2025-11-22 13:13:53] 2025-11-22 21:13:19,337 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 13:13:53] 2025-11-22 21:13:19,337 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895339082/pilotlog.txt
[2025-11-22 13:13:53] 2025-11-22 21:13:19,353 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-22 13:13:53] - Log from pilotlog.txt -
[2025-11-22 13:13:53] 2025-11-22 21:13:19,333 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895339082/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 13:13:53] 2025-11-22 21:13:19,334 | INFO     | extracted standard info from prmon json
[2025-11-22 13:13:53] 2025-11-22 21:13:19,334 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 13:13:53] 2025-11-22 21:13:19,334 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 13:13:53] 2025-11-22 21:13:19,334 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 13:13:53] 2025-11-22 21:13:19,334 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 13:13:53] 2025-11-22 21:13:19,335 | WARNING  | wrong length of table data, x=[1763845761.0, 1763845822.0], y=[798.0, 812961.0] (must be same and length>=4)
[2025-11-22 13:13:53] 2025-11-22 21:13:19,336 | INFO     | could have reported an average CPU frequency of 1507 MHz (4 samples)
[2025-11-22 13:13:53] 2025-11-22 21:13:19,336 | INFO     | ..............................
[2025-11-22 13:13:53] 2025-11-22 21:13:19,336 | INFO     | . Timing measurements:
[2025-11-22 13:13:53] 2025-11-22 21:13:19,336 | INFO     | . get job = 0 s
[2025-11-22 13:13:53] 2025-11-22 21:13:19,336 | INFO     | . initial setup = 3 s
[2025-11-22 13:13:53] 2025-11-22 21:13:19,337 | INFO     | . payload setup = 13 s
[2025-11-22 13:13:53] 2025-11-22 21:13:19,337 | INFO     | . stage-in = 0 s
[2025-11-22 13:13:53] 2025-11-22 21:13:19,337 | INFO     | . payload execution = 120 s
[2025-11-22 13:13:53] 2025-11-22 21:13:19,337 | INFO     | . stage-out = 0 s
[2025-11-22 13:13:53] 2025-11-22 21:13:19,337 | INFO     | . log creation = 0 s
[2025-11-22 13:13:53] 2025-11-22 21:13:19,337 | INFO     | ..............................
[2025-11-22 13:13:53] 2025-11-22 21:13:19,337 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 13:13:53] 2025-11-22 21:13:19,337 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895339082/pilotlog.txt
[2025-11-22 13:13:53] 2025-11-22 21:13:19,354 | WARNING  | 
[2025-11-22 13:13:53] [begin log extracts]
[2025-11-22 13:13:53] - Log from pilotlog.txt -
[2025-11-22 13:13:53] 2025-11-22 21:13:19,333 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895339082/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 13:13:53] 2025-11-22 21:13:19,334 | INFO     | extracted standard info from prmon json
[2025-11-22 13:13:53] 2025-11-22 21:13:19,334 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 13:13:53] 2025-11-22 21:13:19,334 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 13:13:53] 2025-11-22 21:13:19,334 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 13:13:53] 2025-11-22 21:13:19,334 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 13:13:53] 2025-11-22 21:13:19,335 | WARNING  | wrong length of table data, x=[1763845761.0, 1763845822.0], y=[798.0, 812961.0] (must be same and length>=4)
[2025-11-22 13:13:53] 2025-11-22 21:13:19,336 | INFO     | could have reported an average CPU frequency of 1507 MHz (4 samples)
[2025-11-22 13:13:53] 2025-11-22 21:13:19,336 | INFO     | ..............................
[2025-11-22 13:13:53] 2025-11-22 21:13:19,336 | INFO     | . Timing measurements:
[2025-11-22 13:13:53] 2025-11-22 21:13:19,336 | INFO     | . get job = 0 s
[2025-11-22 13:13:53] 2025-11-22 21:13:19,336 | INFO     | . initial setup = 3 s
[2025-11-22 13:13:53] 2025-11-22 21:13:19,337 | INFO     | . payload setup = 13 s
[2025-11-22 13:13:53] 2025-11-22 21:13:19,337 | INFO     | . stage-in = 0 s
[2025-11-22 13:13:53] 2025-11-22 21:13:19,337 | INFO     | . payload execution = 120 s
[2025-11-22 13:13:53] 2025-11-22 21:13:19,337 | INFO     | . stage-out = 0 s
[2025-11-22 13:13:53] 2025-11-22 21:13:19,337 | INFO     | . log creation = 0 s
[2025-11-22 13:13:53] 2025-11-22 21:13:19,337 | INFO     | ..............................
[2025-11-22 13:13:53] 2025-11-22 21:13:19,337 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 13:13:53] 2025-11-22 21:13:19,337 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895339082/pilotlog.txt
[2025-11-22 13:13:53] [end log extracts]
[2025-11-22 13:13:53] 2025-11-22 21:13:19,354 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-22 13:13:53] 2025-11-22 21:13:19,355 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-22 13:13:53] 2025-11-22 21:13:19,464 | INFO     | time since job start (284s) is within the limit (172800.0s)
[2025-11-22 13:13:53] 2025-11-22 21:13:19,602 | INFO     | 
[2025-11-22 13:13:53] 2025-11-22 21:13:19,602 | INFO     | job summary report
[2025-11-22 13:13:53] 2025-11-22 21:13:19,602 | INFO     | --------------------------------------------------
[2025-11-22 13:13:53] 2025-11-22 21:13:19,603 | INFO     | PanDA job id: 6895339082
[2025-11-22 13:13:53] 2025-11-22 21:13:19,603 | INFO     | task id: 47556149
[2025-11-22 13:13:53] 2025-11-22 21:13:19,603 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-22 13:11:05,749 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-22 13:13:53] 2025-11-22 21:13:19,603 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-22 13:13:53] 2025-11-22 21:13:19,603 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 13:13:53] 2025-11-22 21:13:19,603 | INFO     | pilot state: failed 
[2025-11-22 13:13:53] 2025-11-22 21:13:19,603 | INFO     | transexitcode: 65
[2025-11-22 13:13:53] 2025-11-22 21:13:19,603 | INFO     | exeerrorcode: 65
[2025-11-22 13:13:53] 2025-11-22 21:13:19,603 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-22 13:13:53] 2025-11-22 21:13:19,603 | INFO     | exitcode: 65
[2025-11-22 13:13:53] 2025-11-22 21:13:19,603 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-22 13:13:53] 2025-11-22 21:13:19,603 | INFO     | cpuconsumptiontime: 69 s
[2025-11-22 13:13:53] 2025-11-22 21:13:19,604 | INFO     | nevents: 0
[2025-11-22 13:13:53] 2025-11-22 21:13:19,604 | INFO     | neventsw: 0
[2025-11-22 13:13:53] 2025-11-22 21:13:19,604 | INFO     | pid: 1412796
[2025-11-22 13:13:53] 2025-11-22 21:13:19,604 | INFO     | pgrp: 1412796
[2025-11-22 13:13:53] 2025-11-22 21:13:19,605 | INFO     | corecount: 12
[2025-11-22 13:13:53] 2025-11-22 21:13:19,605 | INFO     | event service: False
[2025-11-22 13:13:53] 2025-11-22 21:13:19,605 | INFO     | sizes: {0: 2298580, 1: 2298779, 9: 2299041, 12: 2299069, 137: 2324493, 138: 2328783, 139: 2328939, 263: 2329105}
[2025-11-22 13:13:53] 2025-11-22 21:13:19,605 | INFO     | --------------------------------------------------
[2025-11-22 13:13:53] 2025-11-22 21:13:19,606 | INFO     | 
[2025-11-22 13:13:53] 2025-11-22 21:13:19,606 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-22 13:13:53] 2025-11-22 21:13:19,629 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 13:13:53] 2025-11-22 21:13:19,629 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 13:13:53] 2025-11-22 21:13:19,629 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 13:13:53] 2025-11-22 21:13:19,629 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 13:13:53] 2025-11-22 21:13:19,629 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 13:13:53] 2025-11-22 21:13:19,630 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 13:13:53] 2025-11-22 21:13:19,630 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 13:13:53] 2025-11-22 21:13:19,630 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 13:13:53] 2025-11-22 21:13:19,630 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 13:13:53] 2025-11-22 21:13:19,630 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 13:13:53] 2025-11-22 21:13:19,630 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 13:13:53] 2025-11-22 21:13:19,630 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 13:13:53] 2025-11-22 21:13:19,630 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 13:13:53] 2025-11-22 21:13:19,630 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 13:13:53] 2025-11-22 21:13:19,630 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 13:13:53] 2025-11-22 21:13:19,630 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 13:13:53] 2025-11-22 21:13:19,630 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 13:13:53] 2025-11-22 21:13:19,631 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 13:13:53] 2025-11-22 21:13:19,631 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 13:13:53] 2025-11-22 21:13:19,631 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 13:13:53] 2025-11-22 21:13:19,631 | INFO     | job 6895339082 has completed (purged errors)
[2025-11-22 13:13:53] 2025-11-22 21:13:19,631 | INFO     | overall cleanup function is called
[2025-11-22 13:13:53] 2025-11-22 21:13:20,640 | INFO     | --- collectZombieJob: --- 10, [1412796]
[2025-11-22 13:13:53] 2025-11-22 21:13:20,640 | INFO     | zombie collector waiting for pid 1412796
[2025-11-22 13:13:53] 2025-11-22 21:13:20,640 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 13:13:53] 2025-11-22 21:13:20,640 | INFO     | collected zombie processes
[2025-11-22 13:13:53] 2025-11-22 21:13:20,640 | INFO     | will attempt to kill all subprocesses of pid=1412796
[2025-11-22 13:13:53] 2025-11-22 21:13:21,143 | INFO     | process IDs to be killed: [1412796] (in reverse order)
[2025-11-22 13:13:53] 2025-11-22 21:13:21,266 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 13:13:53] 2025-11-22 21:13:21,267 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 13:13:53] 2025-11-22 21:13:21,280 | INFO     | did not find any defunct processes belonging to 1412796
[2025-11-22 13:13:53] 2025-11-22 21:13:21,293 | INFO     | did not find any defunct processes belonging to 1412796
[2025-11-22 13:13:53] 2025-11-22 21:13:21,294 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 13:13:53] 2025-11-22 21:13:21,294 | INFO     | ready for new job
[2025-11-22 13:13:53] 2025-11-22 21:13:21,294 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 13:13:53] 2025-11-22 21:13:21,296 | INFO     | ***************************************
[2025-11-22 13:13:53] 2025-11-22 21:13:21,296 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 13:13:53] 2025-11-22 21:13:21,296 | INFO     | ***************************************
[2025-11-22 13:13:53] 2025-11-22 21:13:21,296 | INFO     | 
[2025-11-22 13:13:53] 2025-11-22 21:13:21,299 | INFO     | architecture information:
[2025-11-22 13:13:53] 2025-11-22 21:13:21,300 | INFO     | executing command: cat /etc/os-release
[2025-11-22 13:13:53] 2025-11-22 21:13:21,316 | INFO     | cat /etc/os-release:
[2025-11-22 13:13:53] NAME="CentOS Linux"
[2025-11-22 13:13:53] VERSION="7 (Core)"
[2025-11-22 13:13:53] ID="centos"
[2025-11-22 13:13:53] ID_LIKE="rhel fedora"
[2025-11-22 13:13:53] VERSION_ID="7"
[2025-11-22 13:13:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 13:13:53] ANSI_COLOR="0;31"
[2025-11-22 13:13:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 13:13:53] HOME_URL="https://www.centos.org/"
[2025-11-22 13:13:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 13:13:53] 
[2025-11-22 13:13:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 13:13:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 13:13:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 13:13:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 13:13:53] 
[2025-11-22 13:13:53] 2025-11-22 21:13:21,317 | INFO     | ***************************************
[2025-11-22 13:13:53] 2025-11-22 21:13:21,820 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-22 13:13:53] 2025-11-22 21:13:21,838 | INFO     | sufficient remaining disk space (1559732682752 B)
[2025-11-22 13:13:53] 2025-11-22 21:13:21,838 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 13:13:53] 2025-11-22 21:13:21,839 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 13:13:53] 2025-11-22 21:13:21,839 | INFO     | update_server=False
[2025-11-22 13:13:53] 2025-11-22 21:13:21,839 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 13:13:53] 2025-11-22 21:13:21,839 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 13:13:53] 2025-11-22 21:13:21,839 | INFO     | aborting loop
[2025-11-22 13:13:53] 2025-11-22 21:13:22,107 | INFO     | all job control threads have been joined
[2025-11-22 13:13:53] 2025-11-22 21:13:22,605 | INFO     | all data control threads have been joined
[2025-11-22 13:13:53] 2025-11-22 21:13:22,640 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 13:13:53] 2025-11-22 21:13:22,677 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 13:13:53] 2025-11-22 21:13:22,845 | INFO     | [job] job monitor thread has finished
[2025-11-22 13:13:53] 2025-11-22 21:13:22,846 | INFO     | [job] retrieve thread has finished
[2025-11-22 13:13:53] 2025-11-22 21:13:23,066 | INFO     | all payload control threads have been joined
[2025-11-22 13:13:53] 2025-11-22 21:13:23,113 | INFO     | [job] control thread has finished
[2025-11-22 13:13:53] 2025-11-22 21:13:23,171 | INFO     | [payload] validate_post thread has finished
[2025-11-22 13:13:53] 2025-11-22 21:13:23,304 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 13:13:53] 2025-11-22 21:13:23,592 | INFO     | [data] copytool_in thread has finished
[2025-11-22 13:13:53] 2025-11-22 21:13:23,610 | INFO     | [data] control thread has finished
[2025-11-22 13:13:53] 2025-11-22 21:13:23,777 | INFO     | [job] validate thread has finished
[2025-11-22 13:13:53] 2025-11-22 21:13:24,007 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 13:13:53] 2025-11-22 21:13:24,011 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 13:13:53] 2025-11-22 21:13:24,072 | INFO     | [payload] control thread has finished
[2025-11-22 13:13:53] 2025-11-22 21:13:24,162 | INFO     | [payload] failed_post thread has finished
[2025-11-22 13:13:53] 2025-11-22 21:13:24,261 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 13:13:53] 2025-11-22 21:13:24,465 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 13:13:53] 2025-11-22 21:13:24,683 | INFO     | [data] copytool_out thread has finished
[2025-11-22 13:13:53] 2025-11-22 21:13:25,470 | INFO     | [job] queue monitor thread has finished
[2025-11-22 13:13:53] 2025-11-22 21:13:26,650 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 13:13:53] 2025-11-22 21:13:35,088 | INFO     | [monitor] cgroup control has ended
[2025-11-22 13:13:53] 2025-11-22 21:13:36,279 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140393677100864)>', '<ExcThread(monitor, started 140393144379136)>']
[2025-11-22 13:13:53] 2025-11-22 21:13:41,305 | INFO     | all workflow threads have been joined
[2025-11-22 13:13:53] 2025-11-22 21:13:41,305 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 13:13:53] 2025-11-22 21:13:41,306 | INFO     | traces error code: 0
[2025-11-22 13:13:53] 2025-11-22 21:13:41,306 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 13:13:53] 2025-11-22 21:13:52,959 | INFO     | PID=1406168 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 13:13:53] 2025-11-22 21:13:52,959 | INFO     | .. there are 35 such processes running
[2025-11-22 13:13:53] 2025-11-22 21:13:52,960 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 13:13:53] 2025-11-22 21:13:52,960 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 13:13:53] 2025-11-22 21:13:52,960 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 13:13:53] 2025-11-22 21:13:52,960 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 13:13:53] 2025-11-22 21:13:52,960 | INFO     | [monitor] control thread has ended
[2025-11-22 13:13:53] 2025-11-22 21:13:53,171 [wrapper] ==== pilot stdout END ====
[2025-11-22 13:13:53] 2025-11-22 21:13:53,175 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 13:13:53] 2025-11-22 21:13:53,183 [wrapper] pilotpid: 1406168
[2025-11-22 13:13:53] 2025-11-22 21:13:53,188 [wrapper] Pilot exit status: 0
[2025-11-22 13:13:53] 2025-11-22 21:13:53,212 [wrapper] pandaids: 6895339082
[2025-11-22 13:13:53] 2025-11-22 21:13:53,301 [wrapper] cleanup supervisor_pilot 1406174 1406169
[2025-11-22 13:13:53] 2025-11-22 21:13:53,306 [wrapper] Test setup, not cleaning
[2025-11-22 13:13:53] 2025-11-22 21:13:53,309 [wrapper] apfmon messages muted
[2025-11-22 13:13:53] 2025-11-22 21:13:53,312 [wrapper] ==== wrapper stdout END ====
[2025-11-22 13:13:53] 2025-11-22 21:13:53,315 [wrapper] ==== wrapper stderr END ====
[2025-11-22 13:13:53]  *** Error codes and diagnostics ***
[2025-11-22 13:13:53]     "exeErrorCode": 65,
[2025-11-22 13:13:53]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-22 13:13:53]     "pilotErrorCode": 1305,
[2025-11-22 13:13:53]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-22 13:13:53]  *** Listing of results directory ***
[2025-11-22 13:13:53] total 406220
[2025-11-22 13:13:53] -rw-r--r--. 1 boinc boinc    576529 Nov 22 01:55 pilot3.tar.gz
[2025-11-22 13:13:53] -rwx------. 1 boinc boinc     36292 Nov 22 02:05 runpilot2-wrapper.sh
[2025-11-22 13:13:53] -rw-r--r--. 1 boinc boinc      5112 Nov 22 02:05 queuedata.json
[2025-11-22 13:13:53] -rw-r--r--. 1 boinc boinc       100 Nov 22 13:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 13:13:53] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 13:08 run_atlas
[2025-11-22 13:13:53] -rw-r--r--. 1 boinc boinc       105 Nov 22 13:08 job.xml
[2025-11-22 13:13:53] -rw-r--r--. 2 boinc boinc 411750002 Nov 22 13:08 EVNT.47483658._001083.pool.root.1
[2025-11-22 13:13:53] -rw-r--r--. 1 boinc boinc      6595 Nov 22 13:08 init_data.xml
[2025-11-22 13:13:53] -rw-r--r--. 2 boinc boinc     15847 Nov 22 13:08 start_atlas.sh
[2025-11-22 13:13:53] drwxrwx--x. 2 boinc boinc      4096 Nov 22 13:08 shared
[2025-11-22 13:13:53] -rw-r--r--. 2 boinc boinc    590101 Nov 22 13:08 input.tar.gz
[2025-11-22 13:13:53] -rw-r--r--. 1 boinc boinc         0 Nov 22 13:08 boinc_lockfile
[2025-11-22 13:13:53] -rw-r--r--. 1 boinc boinc      2784 Nov 22 13:08 pandaJob.out
[2025-11-22 13:13:53] -rw-------. 1 boinc boinc    989768 Nov 22 13:08 agis_schedconf.cvmfs.json
[2025-11-22 13:13:53] -rw-------. 1 boinc boinc   1526164 Nov 22 13:08 agis_ddmendpoints.agis.ALL.json
[2025-11-22 13:13:53] drwx------. 5 boinc boinc      4096 Nov 22 13:08 pilot3
[2025-11-22 13:13:53] -rw-r--r--. 1 boinc boinc       524 Nov 22 13:10 boinc_task_state.xml
[2025-11-22 13:13:53] -rw-------. 1 boinc boinc       992 Nov 22 13:11 memory_monitor_summary.json
[2025-11-22 13:13:53] -rw-------. 1 boinc boinc     48813 Nov 22 13:11 log.47556149._000693.job.log.tgz.1
[2025-11-22 13:13:53] -rw-------. 1 boinc boinc     10339 Nov 22 13:13 heartbeat.json
[2025-11-22 13:13:53] -rw-r--r--. 1 boinc boinc        23 Nov 22 13:13 wrapper_checkpoint.txt
[2025-11-22 13:13:53] -rw-r--r--. 1 boinc boinc      8192 Nov 22 13:13 boinc_mmap_file
[2025-11-22 13:13:53] -rw-------. 1 boinc boinc        95 Nov 22 13:13 pilot_heartbeat.json
[2025-11-22 13:13:53] -rw-------. 1 boinc boinc       823 Nov 22 13:13 pilotlog.txt
[2025-11-22 13:13:53] -rw-------. 1 boinc boinc    103392 Nov 22 13:13 log.47556149._000693.job.log.1
[2025-11-22 13:13:53] -rw-------. 1 boinc boinc       186 Nov 22 13:13 output.list
[2025-11-22 13:13:53] -rw-r--r--. 1 boinc boinc       620 Nov 22 13:13 runtime_log
[2025-11-22 13:13:53] -rw-------. 1 boinc boinc    174080 Nov 22 13:13 result.tar.gz
[2025-11-22 13:13:53] -rw-r--r--. 1 boinc boinc      8636 Nov 22 13:13 runtime_log.err
[2025-11-22 13:13:53] -rw-------. 1 boinc boinc       644 Nov 22 13:13 O9aNDmZfzg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmo6JKDmghDh7n.diag
[2025-11-22 13:13:53] -rw-r--r--. 1 boinc boinc     22501 Nov 22 13:13 stderr.txt
[2025-11-22 13:13:53] No HITS result produced
[2025-11-22 13:13:53]  *** Contents of shared directory: ***
[2025-11-22 13:13:53] total 402872
[2025-11-22 13:13:53] -rw-r--r--. 2 boinc boinc 411750002 Nov 22 13:08 ATLAS.root_0
[2025-11-22 13:13:53] -rw-r--r--. 2 boinc boinc     15847 Nov 22 13:08 start_atlas.sh
[2025-11-22 13:13:53] -rw-r--r--. 2 boinc boinc    590101 Nov 22 13:08 input.tar.gz
[2025-11-22 13:13:53] -rw-------. 1 boinc boinc    174080 Nov 22 13:13 result.tar.gz
13:13:55 (1402440): run_atlas exited; CPU time 68.617133
13:13:55 (1402440): called boinc_finish(0)

</stderr_txt>
]]>

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