Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:05:44 (963423): wrapper (7.7.26015): starting
13:05:44 (963423): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 13:05:44] Arguments: --nthreads 12
[2025-11-22 13:05:44] Threads: 12
[2025-11-22 13:05:44] Checking for CVMFS
[2025-11-22 13:05:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 13:05:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 13:05:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 13:05:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 13:05:45] 2.11.5.0 4091557 22856 257100 153184 1 432 23504757 45568001 14614 130560 0 180905426 99.753 125049902 22430 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-22 13:05:45] CVMFS is ok
[2025-11-22 13:05:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 13:05:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 13:05:45] Further information can be found at the LHC@home message board.
[2025-11-22 13:05:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 13:05:45] Checking for apptainer binary...
[2025-11-22 13:05:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 13:05:45] Running /usr/bin/apptainer --version
[2025-11-22 13:05:46] apptainer version 1.4.1-1.el9
[2025-11-22 13:05:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 13:05:47] wns0073.triumf.lcg
[2025-11-22 13:05:47] apptainer works
[2025-11-22 13:05:47] Set ATHENA_PROC_NUMBER=12
[2025-11-22 13:05:47] Set ATHENA_CORE_NUMBER=12
[2025-11-22 13:05:47] Starting ATLAS job with PandaID=6895338730
[2025-11-22 13:05:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 13:13:31]  *** The last 200 lines of the pilot log: ***
[2025-11-22 13:13:31] 2025-11-22 21:12:38,881 | INFO     | could have reported an average CPU frequency of 1499 MHz (4 samples)
[2025-11-22 13:13:31] 2025-11-22 21:12:38,881 | INFO     | ..............................
[2025-11-22 13:13:31] 2025-11-22 21:12:38,881 | INFO     | . Timing measurements:
[2025-11-22 13:13:31] 2025-11-22 21:12:38,881 | INFO     | . get job = 0 s
[2025-11-22 13:13:31] 2025-11-22 21:12:38,881 | INFO     | . initial setup = 5 s
[2025-11-22 13:13:31] 2025-11-22 21:12:38,881 | INFO     | . payload setup = 25 s
[2025-11-22 13:13:31] 2025-11-22 21:12:38,881 | INFO     | . stage-in = 0 s
[2025-11-22 13:13:31] 2025-11-22 21:12:38,881 | INFO     | . payload execution = 168 s
[2025-11-22 13:13:31] 2025-11-22 21:12:38,882 | INFO     | . stage-out = 1 s
[2025-11-22 13:13:31] 2025-11-22 21:12:38,882 | INFO     | . log creation = 0 s
[2025-11-22 13:13:31] 2025-11-22 21:12:38,882 | INFO     | ..............................
[2025-11-22 13:13:31] 2025-11-22 21:12:38,882 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 13:13:31] 2025-11-22 21:12:38,882 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895338730/pilotlog.txt
[2025-11-22 13:13:31] 2025-11-22 21:12:38,922 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-22 13:13:31] - Log from pilotlog.txt -
[2025-11-22 13:13:31] 2025-11-22 21:12:38,876 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895338730/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 13:13:31] 2025-11-22 21:12:38,877 | INFO     | extracted standard info from prmon json
[2025-11-22 13:13:31] 2025-11-22 21:12:38,877 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 13:13:31] 2025-11-22 21:12:38,878 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 13:13:31] 2025-11-22 21:12:38,879 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 13:13:31] 2025-11-22 21:12:38,879 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 13:13:31] 2025-11-22 21:12:38,880 | WARNING  | wrong length of table data, x=[1763845683.0, 1763845744.0, 1763845805.0], y=[1569.0, 537512.0, 609477.0] (must be same and length>=4)
[2025-11-22 13:13:31] 2025-11-22 21:12:38,881 | INFO     | could have reported an average CPU frequency of 1499 MHz (4 samples)
[2025-11-22 13:13:31] 2025-11-22 21:12:38,881 | INFO     | ..............................
[2025-11-22 13:13:31] 2025-11-22 21:12:38,881 | INFO     | . Timing measurements:
[2025-11-22 13:13:31] 2025-11-22 21:12:38,881 | INFO     | . get job = 0 s
[2025-11-22 13:13:31] 2025-11-22 21:12:38,881 | INFO     | . initial setup = 5 s
[2025-11-22 13:13:31] 2025-11-22 21:12:38,881 | INFO     | . payload setup = 25 s
[2025-11-22 13:13:31] 2025-11-22 21:12:38,881 | INFO     | . stage-in = 0 s
[2025-11-22 13:13:31] 2025-11-22 21:12:38,881 | INFO     | . payload execution = 168 s
[2025-11-22 13:13:31] 2025-11-22 21:12:38,882 | INFO     | . stage-out = 1 s
[2025-11-22 13:13:31] 2025-11-22 21:12:38,882 | INFO     | . log creation = 0 s
[2025-11-22 13:13:31] 2025-11-22 21:12:38,882 | INFO     | ..............................
[2025-11-22 13:13:31] 2025-11-22 21:12:38,882 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 13:13:31] 2025-11-22 21:12:38,882 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895338730/pilotlog.txt
[2025-11-22 13:13:31] 2025-11-22 21:12:38,922 | WARNING  | 
[2025-11-22 13:13:31] [begin log extracts]
[2025-11-22 13:13:31] - Log from pilotlog.txt -
[2025-11-22 13:13:31] 2025-11-22 21:12:38,876 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895338730/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 13:13:31] 2025-11-22 21:12:38,877 | INFO     | extracted standard info from prmon json
[2025-11-22 13:13:31] 2025-11-22 21:12:38,877 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 13:13:31] 2025-11-22 21:12:38,878 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 13:13:31] 2025-11-22 21:12:38,879 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 13:13:31] 2025-11-22 21:12:38,879 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 13:13:31] 2025-11-22 21:12:38,880 | WARNING  | wrong length of table data, x=[1763845683.0, 1763845744.0, 1763845805.0], y=[1569.0, 537512.0, 609477.0] (must be same and length>=4)
[2025-11-22 13:13:31] 2025-11-22 21:12:38,881 | INFO     | could have reported an average CPU frequency of 1499 MHz (4 samples)
[2025-11-22 13:13:31] 2025-11-22 21:12:38,881 | INFO     | ..............................
[2025-11-22 13:13:31] 2025-11-22 21:12:38,881 | INFO     | . Timing measurements:
[2025-11-22 13:13:31] 2025-11-22 21:12:38,881 | INFO     | . get job = 0 s
[2025-11-22 13:13:31] 2025-11-22 21:12:38,881 | INFO     | . initial setup = 5 s
[2025-11-22 13:13:31] 2025-11-22 21:12:38,881 | INFO     | . payload setup = 25 s
[2025-11-22 13:13:31] 2025-11-22 21:12:38,881 | INFO     | . stage-in = 0 s
[2025-11-22 13:13:31] 2025-11-22 21:12:38,881 | INFO     | . payload execution = 168 s
[2025-11-22 13:13:31] 2025-11-22 21:12:38,882 | INFO     | . stage-out = 1 s
[2025-11-22 13:13:31] 2025-11-22 21:12:38,882 | INFO     | . log creation = 0 s
[2025-11-22 13:13:31] 2025-11-22 21:12:38,882 | INFO     | ..............................
[2025-11-22 13:13:31] 2025-11-22 21:12:38,882 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 13:13:31] 2025-11-22 21:12:38,882 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895338730/pilotlog.txt
[2025-11-22 13:13:31] [end log extracts]
[2025-11-22 13:13:31] 2025-11-22 21:12:38,922 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-22 13:13:31] 2025-11-22 21:12:38,923 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-22 13:13:31] 2025-11-22 21:12:38,953 | INFO     | time since job start (374s) is within the limit (172800.0s)
[2025-11-22 13:13:31] 2025-11-22 21:12:39,200 | INFO     | 
[2025-11-22 13:13:31] 2025-11-22 21:12:39,201 | INFO     | job summary report
[2025-11-22 13:13:31] 2025-11-22 21:12:39,201 | INFO     | --------------------------------------------------
[2025-11-22 13:13:31] 2025-11-22 21:12:39,201 | INFO     | PanDA job id: 6895338730
[2025-11-22 13:13:31] 2025-11-22 21:12:39,201 | INFO     | task id: 47556137
[2025-11-22 13:13:31] 2025-11-22 21:12:39,202 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-22 13:10:15,371 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-22 13:13:31] 2025-11-22 21:12:39,202 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-22 13:13:31] 2025-11-22 21:12:39,202 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 13:13:31] 2025-11-22 21:12:39,202 | INFO     | pilot state: failed 
[2025-11-22 13:13:31] 2025-11-22 21:12:39,202 | INFO     | transexitcode: 65
[2025-11-22 13:13:31] 2025-11-22 21:12:39,202 | INFO     | exeerrorcode: 65
[2025-11-22 13:13:31] 2025-11-22 21:12:39,202 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-22 13:13:31] 2025-11-22 21:12:39,202 | INFO     | exitcode: 65
[2025-11-22 13:13:31] 2025-11-22 21:12:39,202 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-22 13:13:31] 2025-11-22 21:12:39,202 | INFO     | cpuconsumptiontime: 68 s
[2025-11-22 13:13:31] 2025-11-22 21:12:39,202 | INFO     | nevents: 0
[2025-11-22 13:13:31] 2025-11-22 21:12:39,202 | INFO     | neventsw: 0
[2025-11-22 13:13:31] 2025-11-22 21:12:39,202 | INFO     | pid: 973877
[2025-11-22 13:13:31] 2025-11-22 21:12:39,203 | INFO     | pgrp: 973877
[2025-11-22 13:13:31] 2025-11-22 21:12:39,203 | INFO     | corecount: 12
[2025-11-22 13:13:31] 2025-11-22 21:12:39,203 | INFO     | event service: False
[2025-11-22 13:13:31] 2025-11-22 21:12:39,203 | INFO     | sizes: {0: 2298525, 1: 2298609, 2: 2298808, 13: 2298808, 20: 2299126, 24: 2299154, 195: 2324706, 197: 2328996, 199: 2329024, 332: 2329218}
[2025-11-22 13:13:31] 2025-11-22 21:12:39,203 | INFO     | --------------------------------------------------
[2025-11-22 13:13:31] 2025-11-22 21:12:39,203 | INFO     | 
[2025-11-22 13:13:31] 2025-11-22 21:12:39,203 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-22 13:13:31] 2025-11-22 21:12:39,326 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 13:13:31] 2025-11-22 21:12:39,326 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 13:13:31] 2025-11-22 21:12:39,326 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 13:13:31] 2025-11-22 21:12:39,326 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 13:13:31] 2025-11-22 21:12:39,326 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 13:13:31] 2025-11-22 21:12:39,326 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 13:13:31] 2025-11-22 21:12:39,327 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 13:13:31] 2025-11-22 21:12:39,327 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 13:13:31] 2025-11-22 21:12:39,327 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 13:13:31] 2025-11-22 21:12:39,327 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 13:13:31] 2025-11-22 21:12:39,327 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 13:13:31] 2025-11-22 21:12:39,327 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 13:13:31] 2025-11-22 21:12:39,327 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 13:13:31] 2025-11-22 21:12:39,327 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 13:13:31] 2025-11-22 21:12:39,327 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 13:13:31] 2025-11-22 21:12:39,327 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 13:13:31] 2025-11-22 21:12:39,327 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 13:13:31] 2025-11-22 21:12:39,327 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 13:13:31] 2025-11-22 21:12:39,328 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 13:13:31] 2025-11-22 21:12:39,328 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 13:13:31] 2025-11-22 21:12:39,328 | INFO     | job 6895338730 has completed (purged errors)
[2025-11-22 13:13:31] 2025-11-22 21:12:39,328 | INFO     | overall cleanup function is called
[2025-11-22 13:13:31] 2025-11-22 21:12:40,347 | INFO     | --- collectZombieJob: --- 10, [973877]
[2025-11-22 13:13:31] 2025-11-22 21:12:40,347 | INFO     | zombie collector waiting for pid 973877
[2025-11-22 13:13:31] 2025-11-22 21:12:40,347 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 13:13:31] 2025-11-22 21:12:40,347 | INFO     | collected zombie processes
[2025-11-22 13:13:31] 2025-11-22 21:12:40,347 | INFO     | will attempt to kill all subprocesses of pid=973877
[2025-11-22 13:13:31] 2025-11-22 21:12:40,604 | INFO     | process IDs to be killed: [973877] (in reverse order)
[2025-11-22 13:13:31] 2025-11-22 21:12:40,696 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 13:13:31] 2025-11-22 21:12:40,696 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 13:13:31] 2025-11-22 21:12:40,706 | INFO     | did not find any defunct processes belonging to 973877
[2025-11-22 13:13:31] 2025-11-22 21:12:40,715 | INFO     | did not find any defunct processes belonging to 973877
[2025-11-22 13:13:31] 2025-11-22 21:12:40,716 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 13:13:31] 2025-11-22 21:12:40,717 | INFO     | ready for new job
[2025-11-22 13:13:31] 2025-11-22 21:12:40,717 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 13:13:31] 2025-11-22 21:12:40,718 | INFO     | ***************************************
[2025-11-22 13:13:31] 2025-11-22 21:12:40,719 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 13:13:31] 2025-11-22 21:12:40,719 | INFO     | ***************************************
[2025-11-22 13:13:31] 2025-11-22 21:12:40,719 | INFO     | 
[2025-11-22 13:13:31] 2025-11-22 21:12:40,722 | INFO     | architecture information:
[2025-11-22 13:13:31] 2025-11-22 21:12:40,722 | INFO     | executing command: cat /etc/os-release
[2025-11-22 13:13:31] 2025-11-22 21:12:40,740 | INFO     | cat /etc/os-release:
[2025-11-22 13:13:31] NAME="CentOS Linux"
[2025-11-22 13:13:31] VERSION="7 (Core)"
[2025-11-22 13:13:31] ID="centos"
[2025-11-22 13:13:31] ID_LIKE="rhel fedora"
[2025-11-22 13:13:31] VERSION_ID="7"
[2025-11-22 13:13:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 13:13:31] ANSI_COLOR="0;31"
[2025-11-22 13:13:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 13:13:31] HOME_URL="https://www.centos.org/"
[2025-11-22 13:13:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 13:13:31] 
[2025-11-22 13:13:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 13:13:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 13:13:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 13:13:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 13:13:31] 
[2025-11-22 13:13:31] 2025-11-22 21:12:40,741 | INFO     | ***************************************
[2025-11-22 13:13:31] 2025-11-22 21:12:41,244 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-22 13:13:31] 2025-11-22 21:12:41,320 | INFO     | sufficient remaining disk space (924568256512 B)
[2025-11-22 13:13:31] 2025-11-22 21:12:41,320 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 13:13:31] 2025-11-22 21:12:41,320 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 13:13:31] 2025-11-22 21:12:41,320 | INFO     | update_server=False
[2025-11-22 13:13:31] 2025-11-22 21:12:41,321 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 13:13:31] 2025-11-22 21:12:41,521 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 13:13:31] 2025-11-22 21:12:41,521 | INFO     | aborting loop
[2025-11-22 13:13:31] 2025-11-22 21:12:41,784 | INFO     | all payload control threads have been joined
[2025-11-22 13:13:31] 2025-11-22 21:12:41,819 | INFO     | all data control threads have been joined
[2025-11-22 13:13:31] 2025-11-22 21:12:42,326 | INFO     | [job] retrieve thread has finished
[2025-11-22 13:13:31] 2025-11-22 21:12:42,449 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 13:13:31] 2025-11-22 21:12:42,527 | INFO     | [job] job monitor thread has finished
[2025-11-22 13:13:31] 2025-11-22 21:12:42,790 | INFO     | [payload] control thread has finished
[2025-11-22 13:13:31] 2025-11-22 21:12:42,791 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 13:13:31] 2025-11-22 21:12:42,824 | INFO     | [data] control thread has finished
[2025-11-22 13:13:31] 2025-11-22 21:12:43,005 | INFO     | all job control threads have been joined
[2025-11-22 13:13:31] 2025-11-22 21:12:43,034 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 13:13:31] 2025-11-22 21:12:43,138 | INFO     | [payload] failed_post thread has finished
[2025-11-22 13:13:31] 2025-11-22 21:12:43,161 | INFO     | [data] copytool_in thread has finished
[2025-11-22 13:13:31] 2025-11-22 21:12:43,162 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 13:13:31] 2025-11-22 21:12:43,164 | INFO     | [payload] validate_post thread has finished
[2025-11-22 13:13:31] 2025-11-22 21:12:43,167 | INFO     | [job] validate thread has finished
[2025-11-22 13:13:31] 2025-11-22 21:12:43,339 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 13:13:31] 2025-11-22 21:12:43,346 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 13:13:31] 2025-11-22 21:12:44,011 | INFO     | [job] control thread has finished
[2025-11-22 13:13:31] 2025-11-22 21:12:44,146 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 13:13:31] 2025-11-22 21:12:44,456 | INFO     | [data] copytool_out thread has finished
[2025-11-22 13:13:31] 2025-11-22 21:12:45,152 | INFO     | [job] queue monitor thread has finished
[2025-11-22 13:13:31] 2025-11-22 21:12:47,043 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 13:13:31] 2025-11-22 21:13:11,022 | INFO     | 381s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-22 13:13:31] 2025-11-22 21:13:12,509 | INFO     | PID=967154 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 13:13:31] 2025-11-22 21:13:12,509 | INFO     | .. there are 21 such processes running
[2025-11-22 13:13:31] 2025-11-22 21:13:12,510 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 13:13:31] 2025-11-22 21:13:12,510 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 13:13:31] 2025-11-22 21:13:12,510 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 13:13:31] 2025-11-22 21:13:24,575 | INFO     | [monitor] cgroup control has ended
[2025-11-22 13:13:31] 2025-11-22 21:13:24,988 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140458980796224)>', '<ExcThread(monitor, started 140458164475648)>']
[2025-11-22 13:13:31] 2025-11-22 21:13:25,589 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 13:13:31] 2025-11-22 21:13:25,589 | INFO     | [monitor] control thread has ended
[2025-11-22 13:13:31] 2025-11-22 21:13:30,014 | INFO     | all workflow threads have been joined
[2025-11-22 13:13:31] 2025-11-22 21:13:30,014 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 13:13:31] 2025-11-22 21:13:30,015 | INFO     | traces error code: 0
[2025-11-22 13:13:31] 2025-11-22 21:13:30,015 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 13:13:31] 2025-11-22 21:13:30,702 [wrapper] ==== pilot stdout END ====
[2025-11-22 13:13:31] 2025-11-22 21:13:30,729 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 13:13:31] 2025-11-22 21:13:30,773 [wrapper] pilotpid: 967154
[2025-11-22 13:13:31] 2025-11-22 21:13:30,788 [wrapper] Pilot exit status: 0
[2025-11-22 13:13:31] 2025-11-22 21:13:30,804 [wrapper] pandaids: 6895338730
[2025-11-22 13:13:31] 2025-11-22 21:13:30,874 [wrapper] cleanup supervisor_pilot  967160 967155
[2025-11-22 13:13:31] 2025-11-22 21:13:30,877 [wrapper] Test setup, not cleaning
[2025-11-22 13:13:31] 2025-11-22 21:13:30,880 [wrapper] apfmon messages muted
[2025-11-22 13:13:31] 2025-11-22 21:13:30,883 [wrapper] ==== wrapper stdout END ====
[2025-11-22 13:13:31] 2025-11-22 21:13:30,886 [wrapper] ==== wrapper stderr END ====
[2025-11-22 13:13:31]  *** Error codes and diagnostics ***
[2025-11-22 13:13:31]     "exeErrorCode": 65,
[2025-11-22 13:13:31]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-22 13:13:31]     "pilotErrorCode": 1305,
[2025-11-22 13:13:31]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-22 13:13:31]  *** Listing of results directory ***
[2025-11-22 13:13:31] total 403472
[2025-11-22 13:13:31] -rw-r--r--. 1 boinc boinc    576529 Nov 22 01:55 pilot3.tar.gz
[2025-11-22 13:13:31] -rw-r--r--. 1 boinc boinc      5112 Nov 22 01:57 queuedata.json
[2025-11-22 13:13:31] -rwx------. 1 boinc boinc     36292 Nov 22 01:58 runpilot2-wrapper.sh
[2025-11-22 13:13:31] -rw-r--r--. 1 boinc boinc       100 Nov 22 13:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 13:13:31] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 13:05 run_atlas
[2025-11-22 13:13:31] -rw-r--r--. 1 boinc boinc       105 Nov 22 13:05 job.xml
[2025-11-22 13:13:31] -rw-r--r--. 1 boinc boinc      6593 Nov 22 13:05 init_data.xml
[2025-11-22 13:13:31] -rw-r--r--. 2 boinc boinc 408908609 Nov 22 13:05 EVNT.47483658._000340.pool.root.1
[2025-11-22 13:13:31] -rw-r--r--. 2 boinc boinc    590105 Nov 22 13:05 input.tar.gz
[2025-11-22 13:13:31] -rw-r--r--. 2 boinc boinc     15847 Nov 22 13:05 start_atlas.sh
[2025-11-22 13:13:31] drwxrwx--x. 2 boinc boinc      4096 Nov 22 13:05 shared
[2025-11-22 13:13:31] -rw-r--r--. 1 boinc boinc         0 Nov 22 13:05 boinc_lockfile
[2025-11-22 13:13:31] -rw-r--r--. 1 boinc boinc      2784 Nov 22 13:05 pandaJob.out
[2025-11-22 13:13:31] -rw-------. 1 boinc boinc    989768 Nov 22 13:06 agis_schedconf.cvmfs.json
[2025-11-22 13:13:31] -rw-------. 1 boinc boinc   1526164 Nov 22 13:06 agis_ddmendpoints.agis.ALL.json
[2025-11-22 13:13:31] drwx------. 5 boinc boinc      4096 Nov 22 13:06 pilot3
[2025-11-22 13:13:31] -rw-r--r--. 1 boinc boinc       525 Nov 22 13:09 boinc_task_state.xml
[2025-11-22 13:13:31] -rw-------. 1 boinc boinc      1003 Nov 22 13:10 memory_monitor_summary.json
[2025-11-22 13:13:31] -rw-------. 1 boinc boinc     50129 Nov 22 13:10 log.47556137._003366.job.log.tgz.1
[2025-11-22 13:13:31] -rw-------. 1 boinc boinc        95 Nov 22 13:12 pilot_heartbeat.json
[2025-11-22 13:13:31] -rw-------. 1 boinc boinc     10339 Nov 22 13:12 heartbeat.json
[2025-11-22 13:13:31] -rw-r--r--. 1 boinc boinc      8192 Nov 22 13:13 boinc_mmap_file
[2025-11-22 13:13:31] -rw-r--r--. 1 boinc boinc        23 Nov 22 13:13 wrapper_checkpoint.txt
[2025-11-22 13:13:31] -rw-------. 1 boinc boinc      4935 Nov 22 13:13 pilotlog.txt
[2025-11-22 13:13:31] -rw-------. 1 boinc boinc    111618 Nov 22 13:13 log.47556137._003366.job.log.1
[2025-11-22 13:13:31] -rw-------. 1 boinc boinc       186 Nov 22 13:13 output.list
[2025-11-22 13:13:31] -rw-r--r--. 1 boinc boinc       620 Nov 22 13:13 runtime_log
[2025-11-22 13:13:31] -rw-------. 1 boinc boinc    184320 Nov 22 13:13 result.tar.gz
[2025-11-22 13:13:31] -rw-------. 1 boinc boinc       644 Nov 22 13:13 U4GODmaZzg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm93HKDmChecIn.diag
[2025-11-22 13:13:31] -rw-r--r--. 1 boinc boinc      8636 Nov 22 13:13 runtime_log.err
[2025-11-22 13:13:31] -rw-r--r--. 1 boinc boinc     22533 Nov 22 13:13 stderr.txt
[2025-11-22 13:13:31] No HITS result produced
[2025-11-22 13:13:31]  *** Contents of shared directory: ***
[2025-11-22 13:13:31] total 400108
[2025-11-22 13:13:31] -rw-r--r--. 2 boinc boinc 408908609 Nov 22 13:05 ATLAS.root_0
[2025-11-22 13:13:31] -rw-r--r--. 2 boinc boinc    590105 Nov 22 13:05 input.tar.gz
[2025-11-22 13:13:31] -rw-r--r--. 2 boinc boinc     15847 Nov 22 13:05 start_atlas.sh
[2025-11-22 13:13:31] -rw-------. 1 boinc boinc    184320 Nov 22 13:13 result.tar.gz
13:13:33 (963423): run_atlas exited; CPU time 72.550197
13:13:33 (963423): called boinc_finish(0)

</stderr_txt>
]]>

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