Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:19:58 (3864986): wrapper (7.7.26015): starting
13:19:58 (3864986): wrapper: running run_atlas (--nthreads 2)
[2025-11-26 13:19:58] Arguments: --nthreads 2
[2025-11-26 13:19:58] Threads: 2
[2025-11-26 13:19:58] Checking for CVMFS
[2025-11-26 13:19:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:19:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:19:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:19:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:19:58] 2.9.2.0 3774542 740 49304 153322 1 81 35960768 36864001 0 130560 0 237526 99.980 28939 18143 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 13:19:58] CVMFS is ok
[2025-11-26 13:19:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:19:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:19:58] Further information can be found at the LHC@home message board.
[2025-11-26 13:19:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:19:58] Checking for apptainer binary...
[2025-11-26 13:19:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:19:58] Running /usr/bin/apptainer --version
[2025-11-26 13:19:58] apptainer version 1.4.1-1.1
[2025-11-26 13:19:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:19:59] thA310
[2025-11-26 13:19:59] apptainer works
[2025-11-26 13:19:59] Set ATHENA_PROC_NUMBER=2
[2025-11-26 13:19:59] Set ATHENA_CORE_NUMBER=2
[2025-11-26 13:19:59] Starting ATLAS job with PandaID=6895331233
[2025-11-26 13:19:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:40:01 (3948178): wrapper (7.7.26015): starting
00:40:01 (3948178): wrapper: running run_atlas (--nthreads 2)
[2025-11-27 00:40:01] Arguments: --nthreads 2
[2025-11-27 00:40:01] Threads: 2
[2025-11-27 00:40:01] This job has been restarted, cleaning up previous attempt
[2025-11-27 00:40:01] Checking for CVMFS
[2025-11-27 00:40:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:40:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:40:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:40:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:40:02] 2.9.2.0 3948302 0 29996 153340 4 1 36083515 36864001 0 130560 0 0 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 00:40:02] CVMFS is ok
[2025-11-27 00:40:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:40:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:40:02] Further information can be found at the LHC@home message board.
[2025-11-27 00:40:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:40:02] Checking for apptainer binary...
[2025-11-27 00:40:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:40:02] Running /usr/bin/apptainer --version
[2025-11-27 00:40:03] apptainer version 1.4.1-1.1
[2025-11-27 00:40:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:40:03] thA310
[2025-11-27 00:40:03] apptainer works
[2025-11-27 00:40:03] Set ATHENA_PROC_NUMBER=2
[2025-11-27 00:40:03] Set ATHENA_CORE_NUMBER=2
[2025-11-27 00:40:03] Starting ATLAS job with PandaID=6895331233
[2025-11-27 00:40:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 13:10:26]  *** The last 200 lines of the pilot log: ***
[2025-11-27 13:10:26] 2025-11-27 12:09:27,142 | INFO     | zombie collector waiting for pid 3958792
[2025-11-27 13:10:26] 2025-11-27 12:09:27,142 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 13:10:26] 2025-11-27 12:09:27,142 | INFO     | collected zombie processes
[2025-11-27 13:10:26] 2025-11-27 12:09:27,143 | INFO     | will attempt to kill all subprocesses of pid=3958792
[2025-11-27 13:10:26] 2025-11-27 12:09:27,223 | INFO     | process IDs to be killed: [3958792] (in reverse order)
[2025-11-27 13:10:26] 2025-11-27 12:09:27,253 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 13:10:26] 2025-11-27 12:09:27,253 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 13:10:26] 2025-11-27 12:09:27,254 | INFO     | did not find any defunct processes belonging to 3958792
[2025-11-27 13:10:26] 2025-11-27 12:09:27,255 | INFO     | did not find any defunct processes belonging to 3958792
[2025-11-27 13:10:26] 2025-11-27 12:09:27,256 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 13:10:26] 2025-11-27 12:09:27,256 | INFO     | ready for new job
[2025-11-27 13:10:26] 2025-11-27 12:09:27,256 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 13:10:26] 2025-11-27 12:09:27,257 | INFO     | ***************************************
[2025-11-27 13:10:26] 2025-11-27 12:09:27,257 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 13:10:26] 2025-11-27 12:09:27,257 | INFO     | ***************************************
[2025-11-27 13:10:26] 2025-11-27 12:09:27,257 | INFO     | 
[2025-11-27 13:10:26] 2025-11-27 12:09:27,258 | INFO     | architecture information:
[2025-11-27 13:10:26] 2025-11-27 12:09:27,258 | INFO     | executing command: cat /etc/os-release
[2025-11-27 13:10:26] 2025-11-27 12:09:27,267 | INFO     | cat /etc/os-release:
[2025-11-27 13:10:26] NAME="CentOS Linux"
[2025-11-27 13:10:26] VERSION="7 (Core)"
[2025-11-27 13:10:26] ID="centos"
[2025-11-27 13:10:26] ID_LIKE="rhel fedora"
[2025-11-27 13:10:26] VERSION_ID="7"
[2025-11-27 13:10:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 13:10:26] ANSI_COLOR="0;31"
[2025-11-27 13:10:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 13:10:26] HOME_URL="https://www.centos.org/"
[2025-11-27 13:10:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 13:10:26] 
[2025-11-27 13:10:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 13:10:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 13:10:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 13:10:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 13:10:26] 
[2025-11-27 13:10:26] 2025-11-27 12:09:27,267 | INFO     | ***************************************
[2025-11-27 13:10:26] 2025-11-27 12:09:27,768 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 13:10:26] 2025-11-27 12:09:27,780 | INFO     | sufficient remaining disk space (485160386560 B)
[2025-11-27 13:10:26] 2025-11-27 12:09:27,780 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 13:10:26] 2025-11-27 12:09:27,780 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 13:10:26] 2025-11-27 12:09:27,780 | INFO     | update_server=False
[2025-11-27 13:10:26] 2025-11-27 12:09:27,780 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 13:10:26] 2025-11-27 12:09:27,780 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:10:26] 2025-11-27 12:09:27,780 | INFO     | aborting loop
[2025-11-27 13:10:26] 2025-11-27 12:09:27,780 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:10:26] 2025-11-27 12:09:28,316 | INFO     | all data control threads have been joined
[2025-11-27 13:10:26] 2025-11-27 12:09:28,786 | INFO     | [job] job monitor thread has finished
[2025-11-27 13:10:26] 2025-11-27 12:09:28,787 | INFO     | [job] retrieve thread has finished
[2025-11-27 13:10:26] 2025-11-27 12:09:28,788 | INFO     | [job] queue monitor thread has finished
[2025-11-27 13:10:26] 2025-11-27 12:09:28,880 | INFO     | [payload] validate_post thread has finished
[2025-11-27 13:10:26] 2025-11-27 12:09:28,925 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 13:10:26] 2025-11-27 12:09:28,946 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 13:10:26] 2025-11-27 12:09:29,161 | INFO     | all payload control threads have been joined
[2025-11-27 13:10:26] 2025-11-27 12:09:29,168 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 13:10:26] 2025-11-27 12:09:29,322 | INFO     | [data] control thread has finished
[2025-11-27 13:10:26] 2025-11-27 12:09:29,335 | INFO     | all job control threads have been joined
[2025-11-27 13:10:26] 2025-11-27 12:09:29,411 | INFO     | [data] copytool_in thread has finished
[2025-11-27 13:10:26] 2025-11-27 12:09:29,579 | INFO     | [job] validate thread has finished
[2025-11-27 13:10:26] 2025-11-27 12:09:29,645 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 13:10:26] 2025-11-27 12:09:29,687 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 13:10:26] 2025-11-27 12:09:29,696 | INFO     | [payload] failed_post thread has finished
[2025-11-27 13:10:26] 2025-11-27 12:09:29,806 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 13:10:26] 2025-11-27 12:09:30,167 | INFO     | [payload] control thread has finished
[2025-11-27 13:10:26] 2025-11-27 12:09:30,341 | INFO     | [job] control thread has finished
[2025-11-27 13:10:26] 2025-11-27 12:09:30,932 | INFO     | [data] copytool_out thread has finished
[2025-11-27 13:10:26] 2025-11-27 12:09:32,949 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 13:10:26] 2025-11-27 12:09:57,494 | INFO     | PID=3952366 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 13:10:26] 2025-11-27 12:09:57,494 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 13:10:26] 2025-11-27 12:09:57,494 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 13:10:26] 2025-11-27 12:09:57,494 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 13:10:26] 2025-11-27 12:10:17,667 [wrapper] supervise_pilot (15 min periods counter: 51)
[2025-11-27 13:10:26] 2025-11-27 12:10:21,300 | INFO     | [monitor] cgroup control has ended
[2025-11-27 13:10:26] 2025-11-27 12:10:21,670 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139886761568064)>', '<ExcThread(monitor, started 139886136911616)>']
[2025-11-27 13:10:26] 2025-11-27 12:10:22,627 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 13:10:26] 2025-11-27 12:10:22,627 | INFO     | [monitor] control thread has ended
[2025-11-27 13:10:26] 2025-11-27 12:10:26,696 | INFO     | all workflow threads have been joined
[2025-11-27 13:10:26] 2025-11-27 12:10:26,697 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 13:10:26] 2025-11-27 12:10:26,697 | INFO     | traces error code: 0
[2025-11-27 13:10:26] 2025-11-27 12:10:26,697 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 13:10:26] 2025-11-27 12:10:26,742 [wrapper] ==== pilot stdout END ====
[2025-11-27 13:10:26] 2025-11-27 12:10:26,745 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 13:10:26] 2025-11-27 12:10:26,748 [wrapper] pilotpid: 3952366
[2025-11-27 13:10:26] 2025-11-27 12:10:26,750 [wrapper] Pilot exit status: 0
[2025-11-27 13:10:26] 2025-11-27 12:10:26,755 [wrapper] pandaids: 6895331233 6895331233
[2025-11-27 13:10:26] 2025-11-27 12:10:26,769 [wrapper] cleanup supervisor_pilot 4038768 3952367
[2025-11-27 13:10:26] 2025-11-27 12:10:26,772 [wrapper] Test setup, not cleaning
[2025-11-27 13:10:26] 2025-11-27 12:10:26,774 [wrapper] apfmon messages muted
[2025-11-27 13:10:26] 2025-11-27 12:10:26,777 [wrapper] ==== wrapper stdout END ====
[2025-11-27 13:10:26] 2025-11-27 12:10:26,779 [wrapper] ==== wrapper stderr END ====
[2025-11-27 13:10:26]  *** Error codes and diagnostics ***
[2025-11-27 13:10:26]     "exeErrorCode": 0,
[2025-11-27 13:10:26]     "exeErrorDiag": "",
[2025-11-27 13:10:26]     "pilotErrorCode": 0,
[2025-11-27 13:10:26]     "pilotErrorDiag": "",
[2025-11-27 13:10:26]  *** Listing of results directory ***
[2025-11-27 13:10:26] total 1706296
[2025-11-27 13:10:26] drwx------ 5 boinc boinc      4096 Nov  5 18:16 pilot3
[2025-11-27 13:10:26] -rw-r--r-- 1 boinc boinc    576529 Nov 22 00:06 pilot3.tar.gz
[2025-11-27 13:10:26] -rw-r--r-- 1 boinc boinc      5112 Nov 22 00:14 queuedata.json
[2025-11-27 13:10:26] -rwx------ 1 boinc boinc     36292 Nov 22 00:19 runpilot2-wrapper.sh
[2025-11-27 13:10:26] -rw-r--r-- 1 boinc boinc       100 Nov 26 13:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 13:10:26] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 13:19 run_atlas
[2025-11-27 13:10:26] -rw-r--r-- 1 boinc boinc       105 Nov 26 13:19 job.xml
[2025-11-27 13:10:26] -rw-r--r-- 3 boinc boinc 407333890 Nov 26 13:19 EVNT.47483658._000165.pool.root.1
[2025-11-27 13:10:26] -rw-r--r-- 3 boinc boinc 407333890 Nov 26 13:19 ATLAS.root_0
[2025-11-27 13:10:26] drwxrwx--x 2 boinc boinc      4096 Nov 26 13:19 shared
[2025-11-27 13:10:26] -rw-r--r-- 2 boinc boinc    590103 Nov 26 13:19 input.tar.gz
[2025-11-27 13:10:26] -rw-r--r-- 2 boinc boinc     15847 Nov 26 13:19 start_atlas.sh
[2025-11-27 13:10:26] -rw-r--r-- 1 boinc boinc         0 Nov 26 13:19 boinc_setup_complete
[2025-11-27 13:10:26] -rw-r--r-- 1 boinc boinc         0 Nov 26 13:19 boinc_lockfile
[2025-11-27 13:10:26] -rw-r--r-- 1 boinc boinc      6215 Nov 27 00:40 init_data.xml
[2025-11-27 13:10:26] -rw-r--r-- 1 boinc boinc      2785 Nov 27 00:40 pandaJob.out
[2025-11-27 13:10:26] -rw------- 1 boinc boinc    991538 Nov 27 00:40 agis_schedconf.cvmfs.json
[2025-11-27 13:10:26] -rw-r--r-- 1 boinc boinc       533 Nov 27 13:05 boinc_task_state.xml
[2025-11-27 13:10:26] -rw------- 1 boinc boinc 913608448 Nov 27 13:08 HITS.47556137._001645.pool.root.1
[2025-11-27 13:10:26] -rw------- 1 boinc boinc        96 Nov 27 13:09 pilot_heartbeat.json
[2025-11-27 13:10:26] -rw------- 1 boinc boinc      1032 Nov 27 13:09 memory_monitor_summary.json
[2025-11-27 13:10:26] -rw------- 1 boinc boinc   1516240 Nov 27 13:09 agis_ddmendpoints.agis.ALL.json
[2025-11-27 13:10:26] -rw------- 1 boinc boinc   1228599 Nov 27 13:09 log.47556137._001645.job.log.tgz.1
[2025-11-27 13:10:26] -rw------- 1 boinc boinc      8564 Nov 27 13:09 heartbeat.json
[2025-11-27 13:10:26] -rw-r--r-- 1 boinc boinc      8192 Nov 27 13:10 boinc_mmap_file
[2025-11-27 13:10:26] -rw-r--r-- 1 boinc boinc        29 Nov 27 13:10 wrapper_checkpoint.txt
[2025-11-27 13:10:26] -rw------- 1 boinc boinc      4752 Nov 27 13:10 pilotlog.txt
[2025-11-27 13:10:26] -rw------- 1 boinc boinc   6299875 Nov 27 13:10 log.47556137._001645.job.log.1
[2025-11-27 13:10:26] -rw------- 1 boinc boinc       353 Nov 27 13:10 output.list
[2025-11-27 13:10:26] -rw-r--r-- 1 boinc boinc       620 Nov 27 13:10 runtime_log
[2025-11-27 13:10:26] -rw------- 1 boinc boinc   7546880 Nov 27 13:10 result.tar.gz
[2025-11-27 13:10:26] -rw-r--r-- 1 boinc boinc      8983 Nov 27 13:10 runtime_log.err
[2025-11-27 13:10:26] -rw------- 1 boinc boinc       790 Nov 27 13:10 bs9MDmXapg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmklJKDm4fZbPm.diag
[2025-11-27 13:10:26] -rw-r--r-- 1 boinc boinc     12954 Nov 27 13:10 stderr.txt
[2025-11-27 13:10:26] HITS file was successfully produced:
[2025-11-27 13:10:26] -rw------- 1 boinc boinc 913608448 Nov 27 13:08 shared/HITS.pool.root.1
[2025-11-27 13:10:26]  *** Contents of shared directory: ***
[2025-11-27 13:10:26] total 1297960
[2025-11-27 13:10:26] -rw-r--r-- 3 boinc boinc 407333890 Nov 26 13:19 ATLAS.root_0
[2025-11-27 13:10:26] -rw-r--r-- 2 boinc boinc    590103 Nov 26 13:19 input.tar.gz
[2025-11-27 13:10:26] -rw-r--r-- 2 boinc boinc     15847 Nov 26 13:19 start_atlas.sh
[2025-11-27 13:10:26] -rw------- 1 boinc boinc 913608448 Nov 27 13:08 HITS.pool.root.1
[2025-11-27 13:10:26] -rw------- 1 boinc boinc   7546880 Nov 27 13:10 result.tar.gz
13:10:28 (3948178): run_atlas exited; CPU time 89156.963756
13:10:28 (3948178): called boinc_finish(0)

</stderr_txt>
]]>

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