Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
11:51:04 (764573): wrapper (7.7.26015): starting
11:51:04 (764573): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 11:51:04] Arguments: --nthreads 8
[2025-11-23 11:51:04] Threads: 8
[2025-11-23 11:51:04] Checking for CVMFS
[2025-11-23 11:51:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 11:51:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 11:51:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 11:51:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 11:51:08] 2.11.5.0 6031 2759 158852 153205 2 90 2718196 4194304 19679 130560 0 21424340 99.975 398141 442 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-11-23 11:51:08] CVMFS is ok
[2025-11-23 11:51:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 11:51:08] Checking for apptainer binary...
[2025-11-23 11:51:08] apptainer is not installed, using version from CVMFS
[2025-11-23 11:51:08] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 11:51:09] mikemint-desktop
[2025-11-23 11:51:09] apptainer works
[2025-11-23 11:51:09] Set ATHENA_PROC_NUMBER=8
[2025-11-23 11:51:09] Set ATHENA_CORE_NUMBER=8
[2025-11-23 11:51:09] Starting ATLAS job with PandaID=6893850798
[2025-11-23 11:51:09] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 03:17:34]  *** The last 200 lines of the pilot log: ***
[2025-11-24 03:17:34] 2025-11-24 02:16:10,683 | INFO     | time since job start (55337s) is within the limit (172800.0s)
[2025-11-24 03:17:34] 2025-11-24 02:16:10,915 | INFO     | monitor loop #3404: job 0:6893850798 is in state 'finished'
[2025-11-24 03:17:34] 2025-11-24 02:16:10,915 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:17:34] 2025-11-24 02:16:12,695 | INFO     | time since job start (55339s) is within the limit (172800.0s)
[2025-11-24 03:17:34] 2025-11-24 02:16:13,427 | INFO     | monitor loop #3405: job 0:6893850798 is in state 'finished'
[2025-11-24 03:17:34] 2025-11-24 02:16:13,427 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:17:34] 2025-11-24 02:16:14,703 | INFO     | time since job start (55341s) is within the limit (172800.0s)
[2025-11-24 03:17:34] 2025-11-24 02:16:15,939 | INFO     | monitor loop #3406: job 0:6893850798 is in state 'finished'
[2025-11-24 03:17:34] 2025-11-24 02:16:15,939 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:17:34] 2025-11-24 02:16:16,711 | INFO     | time since job start (55343s) is within the limit (172800.0s)
[2025-11-24 03:17:34] 2025-11-24 02:16:18,451 | INFO     | monitor loop #3407: job 0:6893850798 is in state 'finished'
[2025-11-24 03:17:34] 2025-11-24 02:16:18,451 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:17:34] 2025-11-24 02:16:18,723 | INFO     | time since job start (55345s) is within the limit (172800.0s)
[2025-11-24 03:17:34] 2025-11-24 02:16:20,731 | INFO     | time since job start (55347s) is within the limit (172800.0s)
[2025-11-24 03:17:34] 2025-11-24 02:16:20,963 | INFO     | monitor loop #3408: job 0:6893850798 is in state 'finished'
[2025-11-24 03:17:34] 2025-11-24 02:16:20,963 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:17:34] 2025-11-24 02:16:22,611 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 03:17:34] 2025-11-24 02:16:22,637 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2391.3668515625004
[2025-11-24 03:17:34] 2025-11-24 02:16:22,668 | INFO     | using path: /var/lib/boinc-client/slots/19/PanDA_Pilot-6893850798/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 03:17:34] 2025-11-24 02:16:22,669 | INFO     | extracted standard info from prmon json
[2025-11-24 03:17:34] 2025-11-24 02:16:22,669 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 03:17:34] 2025-11-24 02:16:22,669 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 03:17:34] 2025-11-24 02:16:22,686 | INFO     | fitting pss+swap vs Time
[2025-11-24 03:17:34] 2025-11-24 02:16:22,687 | INFO     | sum of square deviations: 226049951242.44092
[2025-11-24 03:17:34] 2025-11-24 02:16:22,711 | INFO     | sum of deviations: 864060296781.9227
[2025-11-24 03:17:34] 2025-11-24 02:16:22,711 | INFO     | mean x: 1763923032.5533333
[2025-11-24 03:17:34] 2025-11-24 02:16:22,711 | INFO     | mean y: 2751754.1266666665
[2025-11-24 03:17:34] 2025-11-24 02:16:22,711 | INFO     | intersect: -6739721980.688922
[2025-11-24 03:17:34] 2025-11-24 02:16:22,712 | INFO     | chi2: 37.73642819039429
[2025-11-24 03:17:34] 2025-11-24 02:16:22,713 | INFO     | sum of square deviations: 222303621291.86172
[2025-11-24 03:17:34] 2025-11-24 02:16:22,724 | INFO     | sum of deviations: 1155926713589.123
[2025-11-24 03:17:34] 2025-11-24 02:16:22,724 | INFO     | mean x: 1763922880.059218
[2025-11-24 03:17:34] 2025-11-24 02:16:22,724 | INFO     | mean y: 2763631.97877095
[2025-11-24 03:17:34] 2025-11-24 02:16:22,724 | INFO     | intersect: -9169221808.125963
[2025-11-24 03:17:34] 2025-11-24 02:16:22,725 | INFO     | chi2: 34.200135451711084
[2025-11-24 03:17:34] 2025-11-24 02:16:22,725 | INFO     | current chi2=34.200135451711084 (change=9.37103193985742 %)
[2025-11-24 03:17:34] 2025-11-24 02:16:22,725 | INFO     | right removable region: 894
[2025-11-24 03:17:34] 2025-11-24 02:16:22,726 | INFO     | sum of square deviations: 222303043011.86172
[2025-11-24 03:17:34] 2025-11-24 02:16:22,737 | INFO     | sum of deviations: 487502704720.61694
[2025-11-24 03:17:34] 2025-11-24 02:16:22,737 | INFO     | mean x: 1763923185.059218
[2025-11-24 03:17:34] 2025-11-24 02:16:22,737 | INFO     | mean y: 2767080.74301676
[2025-11-24 03:17:34] 2025-11-24 02:16:22,737 | INFO     | intersect: -3865454028.537482
[2025-11-24 03:17:34] 2025-11-24 02:16:22,738 | INFO     | chi2: 32.645576295359305
[2025-11-24 03:17:34] 2025-11-24 02:16:22,738 | INFO     | current chi2=32.645576295359305 (change=13.490550481751344 %)
[2025-11-24 03:17:34] 2025-11-24 02:16:22,738 | INFO     | left removable region: 10
[2025-11-24 03:17:34] 2025-11-24 02:16:22,739 | INFO     | sum of square deviations: 214206744372.36652
[2025-11-24 03:17:34] 2025-11-24 02:16:22,748 | INFO     | time since job start (55349s) is within the limit (172800.0s)
[2025-11-24 03:17:34] 2025-11-24 02:16:22,752 | INFO     | sum of deviations: 488798357575.3014
[2025-11-24 03:17:34] 2025-11-24 02:16:22,752 | INFO     | mean x: 1763923154.5723982
[2025-11-24 03:17:34] 2025-11-24 02:16:22,753 | INFO     | mean y: 2796553.3156108595
[2025-11-24 03:17:34] 2025-11-24 02:16:22,753 | INFO     | intersect: -4022299590.927269
[2025-11-24 03:17:34] 2025-11-24 02:16:22,754 | INFO     | chi2: 23.82997664076945
[2025-11-24 03:17:34] 2025-11-24 02:16:22,754 | INFO     | current memory leak: 2.28 B/s (using 884 data points, chi2=23.83)
[2025-11-24 03:17:34] 2025-11-24 02:16:22,755 | INFO     | could have reported an average CPU frequency of 2358 MHz (33 samples)
[2025-11-24 03:17:34] 2025-11-24 02:16:22,756 | INFO     | ..............................
[2025-11-24 03:17:34] 2025-11-24 02:16:22,756 | INFO     | . Timing measurements:
[2025-11-24 03:17:34] 2025-11-24 02:16:22,756 | INFO     | . get job = 0 s
[2025-11-24 03:17:34] 2025-11-24 02:16:22,756 | INFO     | . initial setup = 7 s
[2025-11-24 03:17:34] 2025-11-24 02:16:22,756 | INFO     | . payload setup = 132 s
[2025-11-24 03:17:34] 2025-11-24 02:16:22,756 | INFO     | . stage-in = 0 s
[2025-11-24 03:17:34] 2025-11-24 02:16:22,756 | INFO     | . payload execution = 54949 s
[2025-11-24 03:17:34] 2025-11-24 02:16:22,756 | INFO     | . stage-out = 7 s
[2025-11-24 03:17:34] 2025-11-24 02:16:22,756 | INFO     | . log creation = 2 s
[2025-11-24 03:17:34] 2025-11-24 02:16:22,756 | INFO     | ..............................
[2025-11-24 03:17:34] 2025-11-24 02:16:22,845 | INFO     | 
[2025-11-24 03:17:34] 2025-11-24 02:16:22,845 | INFO     | job summary report
[2025-11-24 03:17:34] 2025-11-24 02:16:22,845 | INFO     | --------------------------------------------------
[2025-11-24 03:17:34] 2025-11-24 02:16:22,845 | INFO     | PanDA job id: 6893850798
[2025-11-24 03:17:34] 2025-11-24 02:16:22,845 | INFO     | task id: 47523449
[2025-11-24 03:17:34] 2025-11-24 02:16:22,845 | INFO     | errors: (none)
[2025-11-24 03:17:34] 2025-11-24 02:16:22,845 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 03:17:34] 2025-11-24 02:16:22,845 | INFO     | pilot state: finished 
[2025-11-24 03:17:34] 2025-11-24 02:16:22,845 | INFO     | transexitcode: 0
[2025-11-24 03:17:34] 2025-11-24 02:16:22,846 | INFO     | exeerrorcode: 0
[2025-11-24 03:17:34] 2025-11-24 02:16:22,846 | INFO     | exeerrordiag: 
[2025-11-24 03:17:34] 2025-11-24 02:16:22,846 | INFO     | exitcode: 0
[2025-11-24 03:17:34] 2025-11-24 02:16:22,846 | INFO     | exitmsg: OK
[2025-11-24 03:17:34] 2025-11-24 02:16:22,846 | INFO     | cpuconsumptiontime: 271221 s
[2025-11-24 03:17:34] 2025-11-24 02:16:22,846 | INFO     | nevents: 1000
[2025-11-24 03:17:34] 2025-11-24 02:16:22,846 | INFO     | neventsw: 0
[2025-11-24 03:17:34] 2025-11-24 02:16:22,846 | INFO     | pid: 814038
[2025-11-24 03:17:34] 2025-11-24 02:16:22,846 | INFO     | pgrp: 814038
[2025-11-24 03:17:34] 2025-11-24 02:16:22,846 | INFO     | corecount: 8
[2025-11-24 03:17:34] 2025-11-24 02:16:22,846 | INFO     | event service: False
[2025-11-24 03:17:34] 2025-11-24 02:16:22,847 | INFO     | sizes: {0: 2297978, 1: 2298671, 2: 2298870, 13: 2298870, 24: 2298926, 35: 2298954, 46: 2299110, 56: 2299138, 67: 2299166, 78: 2299194, 82: 2299512, 89: 2299848, 55
[2025-11-24 03:17:34] 2025-11-24 02:16:22,847 | INFO     | --------------------------------------------------
[2025-11-24 03:17:34] 2025-11-24 02:16:22,847 | INFO     | 
[2025-11-24 03:17:34] 2025-11-24 02:16:22,847 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/19
[2025-11-24 03:17:34] 2025-11-24 02:16:22,882 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 03:17:34] 2025-11-24 02:16:22,883 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 03:17:34] 2025-11-24 02:16:22,883 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 03:17:34] 2025-11-24 02:16:22,883 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 03:17:34] 2025-11-24 02:16:22,883 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 03:17:34] 2025-11-24 02:16:22,883 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 03:17:34] 2025-11-24 02:16:22,883 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 03:17:34] 2025-11-24 02:16:22,884 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 03:17:34] 2025-11-24 02:16:22,884 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 03:17:34] 2025-11-24 02:16:22,884 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 03:17:34] 2025-11-24 02:16:22,884 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 03:17:34] 2025-11-24 02:16:22,884 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 03:17:34] 2025-11-24 02:16:22,884 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 03:17:34] 2025-11-24 02:16:22,884 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 03:17:34] 2025-11-24 02:16:22,884 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 03:17:34] 2025-11-24 02:16:22,884 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 03:17:34] 2025-11-24 02:16:22,884 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 03:17:34] 2025-11-24 02:16:22,884 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 03:17:34] 2025-11-24 02:16:22,885 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 03:17:34] 2025-11-24 02:16:22,885 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 03:17:34] 2025-11-24 02:16:22,885 | INFO     | job 6893850798 has completed (purged errors)
[2025-11-24 03:17:34] 2025-11-24 02:16:22,885 | INFO     | overall cleanup function is called
[2025-11-24 03:17:34] 2025-11-24 02:16:23,903 | INFO     | --- collectZombieJob: --- 10, [814038]
[2025-11-24 03:17:34] 2025-11-24 02:16:23,903 | INFO     | zombie collector waiting for pid 814038
[2025-11-24 03:17:34] 2025-11-24 02:16:23,903 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 03:17:34] 2025-11-24 02:16:23,903 | INFO     | collected zombie processes
[2025-11-24 03:17:34] 2025-11-24 02:16:23,903 | INFO     | will attempt to kill all subprocesses of pid=814038
[2025-11-24 03:17:34] 2025-11-24 02:16:24,854 | INFO     | process IDs to be killed: [814038] (in reverse order)
[2025-11-24 03:17:34] 2025-11-24 02:16:25,656 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 03:17:34] 2025-11-24 02:16:25,656 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 03:17:34] 2025-11-24 02:16:25,674 | INFO     | did not find any defunct processes belonging to 814038
[2025-11-24 03:17:34] 2025-11-24 02:16:25,693 | INFO     | did not find any defunct processes belonging to 814038
[2025-11-24 03:17:34] 2025-11-24 02:16:25,697 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 03:17:34] 2025-11-24 02:16:25,697 | INFO     | ready for new job
[2025-11-24 03:17:34] 2025-11-24 02:16:25,697 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 03:17:34] 2025-11-24 02:16:25,702 | INFO     | ***************************************
[2025-11-24 03:17:34] 2025-11-24 02:16:25,702 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 03:17:34] 2025-11-24 02:16:25,702 | INFO     | ***************************************
[2025-11-24 03:17:34] 2025-11-24 02:16:25,702 | INFO     | 
[2025-11-24 03:17:34] 2025-11-24 02:16:25,713 | INFO     | architecture information:
[2025-11-24 03:17:34] 2025-11-24 02:16:26,167 | INFO     | executing command: cat /etc/os-release
[2025-11-24 03:17:34] 2025-11-24 02:16:26,612 | INFO     | cat /etc/os-release:
[2025-11-24 03:17:34] NAME="CentOS Linux"
[2025-11-24 03:17:34] VERSION="7 (Core)"
[2025-11-24 03:17:34] ID="centos"
[2025-11-24 03:17:34] ID_LIKE="rhel fedora"
[2025-11-24 03:17:34] VERSION_ID="7"
[2025-11-24 03:17:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 03:17:34] ANSI_COLOR="0;31"
[2025-11-24 03:17:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 03:17:34] HOME_URL="https://www.centos.org/"
[2025-11-24 03:17:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 03:17:34] 
[2025-11-24 03:17:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 03:17:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 03:17:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 03:17:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 03:17:34] 
[2025-11-24 03:17:34] 2025-11-24 02:16:26,612 | INFO     | ***************************************
[2025-11-24 03:17:34] 2025-11-24 02:16:27,119 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/19
[2025-11-24 03:17:34] 2025-11-24 02:16:27,363 | INFO     | sufficient remaining disk space (77260128256 B)
[2025-11-24 03:17:34] 2025-11-24 02:16:27,364 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 03:17:34] 2025-11-24 02:16:27,364 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 03:17:34] 2025-11-24 02:16:27,364 | INFO     | update_server=False
[2025-11-24 03:17:34] 2025-11-24 02:16:27,364 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 03:17:34] 2025-11-24 02:16:27,365 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:17:34] 2025-11-24 02:16:27,365 | INFO     | aborting loop
[2025-11-24 03:17:34] 2025-11-24 02:16:27,365 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 03:17:34] 2025-11-24 02:16:27,875 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:17:34] 2025-11-24 02:16:28,001 | INFO     | all data control threads have been joined
[2025-11-24 03:17:34] 2025-11-24 02:16:28,297 | INFO     | all payload control threads have been joined
[2025-11-24 03:17:34] 2025-11-24 02:16:28,367 | INFO     | [job] retrieve thread has finished
[2025-11-24 03:17:34] 2025-11-24 02:16:28,368 | INFO     | [job] job monitor thread has finished
[2025-11-24 03:17:34] 2025-11-24 02:16:28,391 | INFO     | all job control threads have been joined
[2025-11-24 03:17:34] 2025-11-24 02:16:28,419 | INFO     | [data] copytool_in thread has finished
[2025-11-24 03:17:34] 2025-11-24 02:16:28,424 | INFO     | [job] validate thread has finished
[2025-11-24 03:17:34] 2025-11-24 02:16:28,691 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 03:17:34] 2025-11-24 02:16:28,879 | INFO     | [job] queue monitor thread has finished
[2025-11-24 03:17:34] 2025-11-24 02:16:29,007 | INFO     | [data] control thread has finished
[2025-11-24 03:17:34] 2025-11-24 02:16:29,059 | INFO     | [payload] validate_post thread has finished
[2025-11-24 03:17:34] 2025-11-24 02:16:29,303 | INFO     | [payload] control thread has finished
[2025-11-24 03:17:34] 2025-11-24 02:16:29,371 | INFO     | [data] copytool_out thread has finished
[2025-11-24 03:17:34] 2025-11-24 02:16:29,395 | INFO     | [job] control thread has finished
[2025-11-24 03:17:34] 2025-11-24 02:16:29,471 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 03:17:34] 2025-11-24 02:16:29,475 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 03:17:34] 2025-11-24 02:16:29,779 | INFO     | [payload] failed_post thread has finished
[2025-11-24 03:17:34] 2025-11-24 02:16:29,839 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 03:17:34] 2025-11-24 02:16:30,831 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 03:17:34] 2025-11-24 02:16:34,851 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 03:17:34] 2025-11-24 02:16:57,119 | INFO     | PID=781575 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 03:17:34] 2025-11-24 02:16:57,119 | INFO     | .. there are 25 such processes running
[2025-11-24 03:17:34] 2025-11-24 02:16:57,119 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 03:17:34] 2025-11-24 02:16:57,120 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 03:17:34] 2025-11-24 02:16:57,120 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 03:17:34] 2025-11-24 02:17:26,723 | INFO     | [monitor] cgroup control has ended
[2025-11-24 03:17:34] 2025-11-24 02:17:28,215 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140339789428544)>', '<ExcThread(monitor, started 140339121743616)>']
[2025-11-24 03:17:34] 2025-11-24 02:17:28,295 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 03:17:34] 2025-11-24 02:17:28,295 | INFO     | [monitor] control thread has ended
[2025-11-24 03:17:34] 2025-11-24 02:17:33,243 | INFO     | all workflow threads have been joined
[2025-11-24 03:17:34] 2025-11-24 02:17:33,243 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 03:17:34] 2025-11-24 02:17:33,244 | INFO     | traces error code: 0
[2025-11-24 03:17:34] 2025-11-24 02:17:33,244 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 03:17:34] 2025-11-24 02:17:33,547 [wrapper] ==== pilot stdout END ====
[2025-11-24 03:17:34] 2025-11-24 02:17:33,595 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 03:17:34] 2025-11-24 02:17:33,619 [wrapper] pilotpid: 781575
[2025-11-24 03:17:34] 2025-11-24 02:17:33,663 [wrapper] Pilot exit status: 0
[2025-11-24 03:17:34] 2025-11-24 02:17:33,839 [wrapper] pandaids: 6893850798
[2025-11-24 03:17:34] 2025-11-24 02:17:34,190 [wrapper] cleanup supervisor_pilot 3255506 781576
[2025-11-24 03:17:34] 2025-11-24 02:17:34,198 [wrapper] Test setup, not cleaning
[2025-11-24 03:17:34] 2025-11-24 02:17:34,219 [wrapper] apfmon messages muted
[2025-11-24 03:17:34] 2025-11-24 02:17:34,253 [wrapper] ==== wrapper stdout END ====
[2025-11-24 03:17:34] 2025-11-24 02:17:34,273 [wrapper] ==== wrapper stderr END ====
[2025-11-24 03:17:34]  *** Error codes and diagnostics ***
[2025-11-24 03:17:34]     "exeErrorCode": 0,
[2025-11-24 03:17:34]     "exeErrorDiag": "",
[2025-11-24 03:17:34]     "pilotErrorCode": 0,
[2025-11-24 03:17:34]     "pilotErrorDiag": "",
[2025-11-24 03:17:34]  *** Listing of results directory ***
[2025-11-24 03:17:34] insgesamt 1311844
[2025-11-24 03:17:34] -rw-r--r-- 1 boinc boinc    576529 Nov 20 12:09 pilot3.tar.gz
[2025-11-24 03:17:34] -rw-r--r-- 1 boinc boinc      5112 Nov 20 12:31 queuedata.json
[2025-11-24 03:17:34] -rwx------ 1 boinc boinc     36292 Nov 20 12:31 runpilot2-wrapper.sh
[2025-11-24 03:17:34] -rw-r--r-- 1 boinc boinc       100 Nov 23 11:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 03:17:34] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 11:51 run_atlas
[2025-11-24 03:17:34] -rw-r--r-- 1 boinc boinc       105 Nov 23 11:51 job.xml
[2025-11-24 03:17:34] -rw-r--r-- 2 boinc boinc     15847 Nov 23 11:51 start_atlas.sh
[2025-11-24 03:17:34] drwxrwx--x 2 boinc boinc      4096 Nov 23 11:51 shared
[2025-11-24 03:17:34] -rw-r--r-- 2 boinc boinc    590102 Nov 23 11:51 input.tar.gz
[2025-11-24 03:17:34] -rw-r--r-- 1 boinc boinc      6666 Nov 23 11:51 init_data.xml
[2025-11-24 03:17:34] -rw-r--r-- 2 boinc boinc 409340436 Nov 23 11:51 EVNT.47493127._000343.pool.root.1
[2025-11-24 03:17:34] -rw-r--r-- 1 boinc boinc         0 Nov 23 11:51 boinc_lockfile
[2025-11-24 03:17:34] -rw-r--r-- 1 boinc boinc      2785 Nov 23 11:51 pandaJob.out
[2025-11-24 03:17:34] -rw------- 1 boinc boinc        46 Nov 23 11:51 setup.sh.local
[2025-11-24 03:17:34] -rw------- 1 boinc boinc    989784 Nov 23 11:53 agis_schedconf.cvmfs.json
[2025-11-24 03:17:34] drwx------ 5 boinc boinc      4096 Nov 23 11:53 pilot3
[2025-11-24 03:17:34] -rw-r--r-- 1 boinc boinc       533 Nov 24 02:41 boinc_task_state.xml
[2025-11-24 03:17:34] -rw------- 1 boinc boinc 911583298 Nov 24 03:13 HITS.47523449._003423.pool.root.1
[2025-11-24 03:17:34] -rw------- 1 boinc boinc      1041 Nov 24 03:14 memory_monitor_summary.json
[2025-11-24 03:17:34] -rw------- 1 boinc boinc   1526164 Nov 24 03:14 agis_ddmendpoints.agis.ALL.json
[2025-11-24 03:17:34] -rw------- 1 boinc boinc   2066489 Nov 24 03:14 log.47523449._003423.job.log.tgz.1
[2025-11-24 03:17:34] -rw------- 1 boinc boinc        95 Nov 24 03:16 pilot_heartbeat.json
[2025-11-24 03:17:34] -rw------- 1 boinc boinc      8586 Nov 24 03:16 heartbeat.json
[2025-11-24 03:17:34] -rw-r--r-- 1 boinc boinc      8192 Nov 24 03:17 boinc_mmap_file
[2025-11-24 03:17:34] -rw-r--r-- 1 boinc boinc        29 Nov 24 03:17 wrapper_checkpoint.txt
[2025-11-24 03:17:34] -rw------- 1 boinc boinc      4831 Nov 24 03:17 pilotlog.txt
[2025-11-24 03:17:34] -rw------- 1 boinc boinc   7171401 Nov 24 03:17 log.47523449._003423.job.log.1
[2025-11-24 03:17:34] -rw------- 1 boinc boinc       353 Nov 24 03:17 output.list
[2025-11-24 03:17:34] -rw-r--r-- 1 boinc boinc       620 Nov 24 03:17 runtime_log
[2025-11-24 03:17:34] -rw------- 1 boinc boinc   9256960 Nov 24 03:17 result.tar.gz
[2025-11-24 03:17:34] -rw-r--r-- 1 boinc boinc      9473 Nov 24 03:17 runtime_log.err
[2025-11-24 03:17:34] -rw------- 1 boinc boinc       673 Nov 24 03:17 eV3MDmr3Hg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmidHKDm63PNTm.diag
[2025-11-24 03:17:34] -rw-r--r-- 1 boinc boinc     21531 Nov 24 03:17 stderr.txt
[2025-11-24 03:17:34] HITS file was successfully produced:
[2025-11-24 03:17:34] -rw------- 1 boinc boinc 911583298 Nov 24 03:13 shared/HITS.pool.root.1
[2025-11-24 03:17:34]  *** Contents of shared directory: ***
[2025-11-24 03:17:34] insgesamt 1299612
[2025-11-24 03:17:34] -rw-r--r-- 2 boinc boinc     15847 Nov 23 11:51 start_atlas.sh
[2025-11-24 03:17:34] -rw-r--r-- 2 boinc boinc    590102 Nov 23 11:51 input.tar.gz
[2025-11-24 03:17:34] -rw-r--r-- 2 boinc boinc 409340436 Nov 23 11:51 ATLAS.root_0
[2025-11-24 03:17:34] -rw------- 1 boinc boinc 911583298 Nov 24 03:13 HITS.pool.root.1
[2025-11-24 03:17:34] -rw------- 1 boinc boinc   9256960 Nov 24 03:17 result.tar.gz
03:17:36 (764573): run_atlas exited; CPU time 273939.589400
03:17:36 (764573): called boinc_finish(0)

</stderr_txt>
]]>

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