Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
11:13:27 (632114): wrapper (7.7.26015): starting
11:13:27 (632114): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 11:13:27] Arguments: --nthreads 8
[2025-11-23 11:13:27] Threads: 8
[2025-11-23 11:13:27] Checking for CVMFS
[2025-11-23 11:13:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 11:13:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 11:13:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 11:13:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 11:13:30] 2.11.5.0 6031 2722 157396 153203 0 90 2710324 4194305 20564 130560 0 21033206 99.974 395384 441 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-11-23 11:13:30] CVMFS is ok
[2025-11-23 11:13:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 11:13:31] Checking for apptainer binary...
[2025-11-23 11:13:31] apptainer is not installed, using version from CVMFS
[2025-11-23 11:13:31] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 11:13:31] mikemint-desktop
[2025-11-23 11:13:31] apptainer works
[2025-11-23 11:13:32] Set ATHENA_PROC_NUMBER=8
[2025-11-23 11:13:32] Set ATHENA_CORE_NUMBER=8
[2025-11-23 11:13:32] Starting ATLAS job with PandaID=6890966802
[2025-11-23 11:13:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 02:44:03]  *** The last 200 lines of the pilot log: ***
[2025-11-24 02:44:03] 2025-11-24 01:42:51,843 | INFO     | time since job start (55590s) is within the limit (172800.0s)
[2025-11-24 02:44:03] 2025-11-24 01:42:53,047 | INFO     | monitor loop #3405: job 0:6890966802 is in state 'finished'
[2025-11-24 02:44:03] 2025-11-24 01:42:53,047 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:44:03] 2025-11-24 01:42:53,859 | INFO     | time since job start (55592s) is within the limit (172800.0s)
[2025-11-24 02:44:03] 2025-11-24 01:42:55,559 | INFO     | monitor loop #3406: job 0:6890966802 is in state 'finished'
[2025-11-24 02:44:03] 2025-11-24 01:42:55,559 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:44:03] 2025-11-24 01:42:55,867 | INFO     | time since job start (55594s) is within the limit (172800.0s)
[2025-11-24 02:44:03] 2025-11-24 01:42:57,875 | INFO     | time since job start (55596s) is within the limit (172800.0s)
[2025-11-24 02:44:03] 2025-11-24 01:42:58,069 | INFO     | monitor loop #3407: job 0:6890966802 is in state 'finished'
[2025-11-24 02:44:03] 2025-11-24 01:42:58,070 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:44:03] 2025-11-24 01:42:59,887 | INFO     | time since job start (55598s) is within the limit (172800.0s)
[2025-11-24 02:44:03] 2025-11-24 01:43:00,579 | INFO     | monitor loop #3408: job 0:6890966802 is in state 'finished'
[2025-11-24 02:44:03] 2025-11-24 01:43:00,579 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:44:03] 2025-11-24 01:43:01,891 | INFO     | time since job start (55600s) is within the limit (172800.0s)
[2025-11-24 02:44:03] 2025-11-24 01:43:02,931 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 02:44:03] 2025-11-24 01:43:02,985 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2352.2951796875004
[2025-11-24 02:44:03] 2025-11-24 01:43:03,053 | INFO     | using path: /var/lib/boinc-client/slots/5/PanDA_Pilot-6890966802/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 02:44:03] 2025-11-24 01:43:03,054 | INFO     | extracted standard info from prmon json
[2025-11-24 02:44:03] 2025-11-24 01:43:03,054 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 02:44:03] 2025-11-24 01:43:03,054 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 02:44:03] 2025-11-24 01:43:03,086 | INFO     | fitting pss+swap vs Time
[2025-11-24 02:44:03] 2025-11-24 01:43:03,096 | INFO     | sum of square deviations: 229078605407.6098
[2025-11-24 02:44:03] 2025-11-24 01:43:03,107 | INFO     | monitor loop #3409: job 0:6890966802 is in state 'finished'
[2025-11-24 02:44:03] 2025-11-24 01:43:03,107 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:44:03] 2025-11-24 01:43:03,141 | INFO     | sum of deviations: 1365201639250.673
[2025-11-24 02:44:03] 2025-11-24 01:43:03,142 | INFO     | mean x: 1763920907.5696902
[2025-11-24 02:44:03] 2025-11-24 01:43:03,142 | INFO     | mean y: 2743657.155973451
[2025-11-24 02:44:03] 2025-11-24 01:43:03,142 | INFO     | intersect: -10509402207.525812
[2025-11-24 02:44:03] 2025-11-24 01:43:03,147 | INFO     | chi2: 40.157122694594015
[2025-11-24 02:44:03] 2025-11-24 01:43:03,149 | INFO     | sum of square deviations: 225298810856.85657
[2025-11-24 02:44:03] 2025-11-24 01:43:03,205 | INFO     | sum of deviations: 1652087904391.9133
[2025-11-24 02:44:03] 2025-11-24 01:43:03,206 | INFO     | mean x: 1763920755.0756395
[2025-11-24 02:44:03] 2025-11-24 01:43:03,206 | INFO     | mean y: 2755231.9276974415
[2025-11-24 02:44:03] 2025-11-24 01:43:03,206 | INFO     | intersect: -12931854288.127954
[2025-11-24 02:44:03] 2025-11-24 01:43:03,207 | INFO     | chi2: 36.81671162714818
[2025-11-24 02:44:03] 2025-11-24 01:43:03,207 | INFO     | current chi2=36.81671162714818 (change=8.318352619161939 %)
[2025-11-24 02:44:03] 2025-11-24 01:43:03,207 | INFO     | right removable region: 898
[2025-11-24 02:44:03] 2025-11-24 01:43:03,209 | INFO     | sum of square deviations: 225298220986.8566
[2025-11-24 02:44:03] 2025-11-24 01:43:03,260 | INFO     | sum of deviations: 993594457864.6495
[2025-11-24 02:44:03] 2025-11-24 01:43:03,260 | INFO     | mean x: 1763921060.0756395
[2025-11-24 02:44:03] 2025-11-24 01:43:03,260 | INFO     | mean y: 2758647.5639599557
[2025-11-24 02:44:03] 2025-11-24 01:43:03,260 | INFO     | intersect: -7776362650.975441
[2025-11-24 02:44:03] 2025-11-24 01:43:03,261 | INFO     | chi2: 35.043583740361235
[2025-11-24 02:44:03] 2025-11-24 01:43:03,261 | INFO     | current chi2=35.043583740361235 (change=12.733828051184476 %)
[2025-11-24 02:44:03] 2025-11-24 01:43:03,262 | INFO     | left removable region: 10
[2025-11-24 02:44:03] 2025-11-24 01:43:03,267 | INFO     | sum of square deviations: 217128943532.97174
[2025-11-24 02:44:03] 2025-11-24 01:43:03,310 | INFO     | sum of deviations: 999001591746.5977
[2025-11-24 02:44:03] 2025-11-24 01:43:03,310 | INFO     | mean x: 1763921029.588964
[2025-11-24 02:44:03] 2025-11-24 01:43:03,310 | INFO     | mean y: 2787305.796171171
[2025-11-24 02:44:03] 2025-11-24 01:43:03,310 | INFO     | intersect: -8112942857.129265
[2025-11-24 02:44:03] 2025-11-24 01:43:03,315 | INFO     | chi2: 26.51791937437804
[2025-11-24 02:44:03] 2025-11-24 01:43:03,316 | INFO     | current memory leak: 4.60 B/s (using 888 data points, chi2=26.52)
[2025-11-24 02:44:03] 2025-11-24 01:43:03,317 | INFO     | could have reported an average CPU frequency of 2357 MHz (33 samples)
[2025-11-24 02:44:03] 2025-11-24 01:43:03,317 | INFO     | ..............................
[2025-11-24 02:44:03] 2025-11-24 01:43:03,317 | INFO     | . Timing measurements:
[2025-11-24 02:44:03] 2025-11-24 01:43:03,317 | INFO     | . get job = 0 s
[2025-11-24 02:44:03] 2025-11-24 01:43:03,317 | INFO     | . initial setup = 7 s
[2025-11-24 02:44:03] 2025-11-24 01:43:03,317 | INFO     | . payload setup = 133 s
[2025-11-24 02:44:03] 2025-11-24 01:43:03,317 | INFO     | . stage-in = 0 s
[2025-11-24 02:44:03] 2025-11-24 01:43:03,317 | INFO     | . payload execution = 55217 s
[2025-11-24 02:44:03] 2025-11-24 01:43:03,317 | INFO     | . stage-out = 5 s
[2025-11-24 02:44:03] 2025-11-24 01:43:03,318 | INFO     | . log creation = 1 s
[2025-11-24 02:44:03] 2025-11-24 01:43:03,318 | INFO     | ..............................
[2025-11-24 02:44:03] 2025-11-24 01:43:03,611 | INFO     | 
[2025-11-24 02:44:03] 2025-11-24 01:43:03,611 | INFO     | job summary report
[2025-11-24 02:44:03] 2025-11-24 01:43:03,611 | INFO     | --------------------------------------------------
[2025-11-24 02:44:03] 2025-11-24 01:43:03,611 | INFO     | PanDA job id: 6890966802
[2025-11-24 02:44:03] 2025-11-24 01:43:03,611 | INFO     | task id: 47483661
[2025-11-24 02:44:03] 2025-11-24 01:43:03,611 | INFO     | errors: (none)
[2025-11-24 02:44:03] 2025-11-24 01:43:03,612 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 02:44:03] 2025-11-24 01:43:03,612 | INFO     | pilot state: finished 
[2025-11-24 02:44:03] 2025-11-24 01:43:03,612 | INFO     | transexitcode: 0
[2025-11-24 02:44:03] 2025-11-24 01:43:03,612 | INFO     | exeerrorcode: 0
[2025-11-24 02:44:03] 2025-11-24 01:43:03,612 | INFO     | exeerrordiag: 
[2025-11-24 02:44:03] 2025-11-24 01:43:03,612 | INFO     | exitcode: 0
[2025-11-24 02:44:03] 2025-11-24 01:43:03,612 | INFO     | exitmsg: OK
[2025-11-24 02:44:03] 2025-11-24 01:43:03,612 | INFO     | cpuconsumptiontime: 270403 s
[2025-11-24 02:44:03] 2025-11-24 01:43:03,612 | INFO     | nevents: 1000
[2025-11-24 02:44:03] 2025-11-24 01:43:03,612 | INFO     | neventsw: 0
[2025-11-24 02:44:03] 2025-11-24 01:43:03,613 | INFO     | pid: 672862
[2025-11-24 02:44:03] 2025-11-24 01:43:03,613 | INFO     | pgrp: 672862
[2025-11-24 02:44:03] 2025-11-24 01:43:03,613 | INFO     | corecount: 8
[2025-11-24 02:44:03] 2025-11-24 01:43:03,613 | INFO     | event service: False
[2025-11-24 02:44:03] 2025-11-24 01:43:03,613 | INFO     | sizes: {0: 2297964, 1: 2298656, 2: 2298855, 13: 2298855, 23: 2298911, 34: 2298939, 45: 2299095, 56: 2299123, 67: 2299151, 77: 2299179, 83: 2299497, 88: 2299833, 55
[2025-11-24 02:44:03] 2025-11-24 01:43:03,613 | INFO     | --------------------------------------------------
[2025-11-24 02:44:03] 2025-11-24 01:43:03,613 | INFO     | 
[2025-11-24 02:44:03] 2025-11-24 01:43:03,613 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/5
[2025-11-24 02:44:03] 2025-11-24 01:43:03,836 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 02:44:03] 2025-11-24 01:43:03,837 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 02:44:03] 2025-11-24 01:43:03,837 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 02:44:03] 2025-11-24 01:43:03,837 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 02:44:03] 2025-11-24 01:43:03,837 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 02:44:03] 2025-11-24 01:43:03,837 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 02:44:03] 2025-11-24 01:43:03,837 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 02:44:03] 2025-11-24 01:43:03,837 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 02:44:03] 2025-11-24 01:43:03,837 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 02:44:03] 2025-11-24 01:43:03,837 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 02:44:03] 2025-11-24 01:43:03,838 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 02:44:03] 2025-11-24 01:43:03,838 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 02:44:03] 2025-11-24 01:43:03,838 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 02:44:03] 2025-11-24 01:43:03,838 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 02:44:03] 2025-11-24 01:43:03,838 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 02:44:03] 2025-11-24 01:43:03,838 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 02:44:03] 2025-11-24 01:43:03,838 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 02:44:03] 2025-11-24 01:43:03,838 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 02:44:03] 2025-11-24 01:43:03,838 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 02:44:03] 2025-11-24 01:43:03,839 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 02:44:03] 2025-11-24 01:43:03,843 | INFO     | job 6890966802 has completed (purged errors)
[2025-11-24 02:44:03] 2025-11-24 01:43:03,843 | INFO     | overall cleanup function is called
[2025-11-24 02:44:03] 2025-11-24 01:43:04,879 | INFO     | --- collectZombieJob: --- 10, [672862]
[2025-11-24 02:44:03] 2025-11-24 01:43:04,879 | INFO     | zombie collector waiting for pid 672862
[2025-11-24 02:44:03] 2025-11-24 01:43:04,879 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 02:44:03] 2025-11-24 01:43:04,879 | INFO     | collected zombie processes
[2025-11-24 02:44:03] 2025-11-24 01:43:04,879 | INFO     | will attempt to kill all subprocesses of pid=672862
[2025-11-24 02:44:03] 2025-11-24 01:43:06,396 | INFO     | process IDs to be killed: [672862] (in reverse order)
[2025-11-24 02:44:03] 2025-11-24 01:43:08,214 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 02:44:03] 2025-11-24 01:43:08,215 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 02:44:03] 2025-11-24 01:43:08,265 | INFO     | did not find any defunct processes belonging to 672862
[2025-11-24 02:44:03] 2025-11-24 01:43:08,313 | INFO     | did not find any defunct processes belonging to 672862
[2025-11-24 02:44:03] 2025-11-24 01:43:08,343 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 02:44:03] 2025-11-24 01:43:08,343 | INFO     | ready for new job
[2025-11-24 02:44:03] 2025-11-24 01:43:08,343 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 02:44:03] 2025-11-24 01:43:08,349 | INFO     | ***************************************
[2025-11-24 02:44:03] 2025-11-24 01:43:08,349 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 02:44:03] 2025-11-24 01:43:08,350 | INFO     | ***************************************
[2025-11-24 02:44:03] 2025-11-24 01:43:08,350 | INFO     | 
[2025-11-24 02:44:03] 2025-11-24 01:43:08,374 | INFO     | architecture information:
[2025-11-24 02:44:03] 2025-11-24 01:43:08,383 | INFO     | executing command: cat /etc/os-release
[2025-11-24 02:44:03] 2025-11-24 01:43:08,543 | INFO     | cat /etc/os-release:
[2025-11-24 02:44:03] NAME="CentOS Linux"
[2025-11-24 02:44:03] VERSION="7 (Core)"
[2025-11-24 02:44:03] ID="centos"
[2025-11-24 02:44:03] ID_LIKE="rhel fedora"
[2025-11-24 02:44:03] VERSION_ID="7"
[2025-11-24 02:44:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 02:44:03] ANSI_COLOR="0;31"
[2025-11-24 02:44:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 02:44:03] HOME_URL="https://www.centos.org/"
[2025-11-24 02:44:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 02:44:03] 
[2025-11-24 02:44:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 02:44:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 02:44:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 02:44:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 02:44:03] 
[2025-11-24 02:44:03] 2025-11-24 01:43:08,543 | INFO     | ***************************************
[2025-11-24 02:44:03] 2025-11-24 01:43:09,047 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/5
[2025-11-24 02:44:03] 2025-11-24 01:43:09,167 | INFO     | sufficient remaining disk space (76272369664 B)
[2025-11-24 02:44:03] 2025-11-24 01:43:09,168 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 02:44:03] 2025-11-24 01:43:09,168 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 02:44:03] 2025-11-24 01:43:09,168 | INFO     | update_server=False
[2025-11-24 02:44:03] 2025-11-24 01:43:09,168 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 02:44:03] 2025-11-24 01:43:09,168 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:44:03] 2025-11-24 01:43:09,169 | INFO     | aborting loop
[2025-11-24 02:44:03] 2025-11-24 01:43:09,171 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:44:03] 2025-11-24 01:43:09,427 | INFO     | all payload control threads have been joined
[2025-11-24 02:44:03] 2025-11-24 01:43:09,451 | INFO     | all job control threads have been joined
[2025-11-24 02:44:03] 2025-11-24 01:43:09,747 | INFO     | all data control threads have been joined
[2025-11-24 02:44:03] 2025-11-24 01:43:10,175 | INFO     | [job] retrieve thread has finished
[2025-11-24 02:44:03] 2025-11-24 01:43:10,176 | INFO     | [job] queue monitor thread has finished
[2025-11-24 02:44:03] 2025-11-24 01:43:10,176 | INFO     | [job] job monitor thread has finished
[2025-11-24 02:44:03] 2025-11-24 01:43:10,395 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 02:44:03] 2025-11-24 01:43:10,431 | INFO     | [payload] control thread has finished
[2025-11-24 02:44:03] 2025-11-24 01:43:10,435 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 02:44:03] 2025-11-24 01:43:10,447 | INFO     | [job] validate thread has finished
[2025-11-24 02:44:03] 2025-11-24 01:43:10,459 | INFO     | [job] control thread has finished
[2025-11-24 02:44:03] 2025-11-24 01:43:10,751 | INFO     | [data] control thread has finished
[2025-11-24 02:44:03] 2025-11-24 01:43:10,803 | INFO     | [data] copytool_in thread has finished
[2025-11-24 02:44:03] 2025-11-24 01:43:10,975 | INFO     | [payload] validate_post thread has finished
[2025-11-24 02:44:03] 2025-11-24 01:43:11,127 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 02:44:03] 2025-11-24 01:43:11,449 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 02:44:03] 2025-11-24 01:43:11,451 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 02:44:03] 2025-11-24 01:43:11,551 | INFO     | [payload] failed_post thread has finished
[2025-11-24 02:44:03] 2025-11-24 01:43:11,637 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 02:44:03] 2025-11-24 01:43:12,443 | INFO     | [data] copytool_out thread has finished
[2025-11-24 02:44:03] 2025-11-24 01:43:15,651 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 02:44:03] 2025-11-24 01:43:33,967 | INFO     | 55611s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-24 02:44:03] 2025-11-24 01:43:36,254 | INFO     | PID=645475 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 02:44:03] 2025-11-24 01:43:36,255 | INFO     | .. there are 25 such processes running
[2025-11-24 02:44:03] 2025-11-24 01:43:36,256 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 02:44:03] 2025-11-24 01:43:36,256 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 02:44:03] 2025-11-24 01:43:36,256 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 02:44:03] 2025-11-24 01:43:55,607 | INFO     | [monitor] cgroup control has ended
[2025-11-24 02:44:03] 2025-11-24 01:43:56,335 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140274915616576)>', '<ExcThread(monitor, started 140274462336768)>']
[2025-11-24 02:44:03] 2025-11-24 01:43:56,391 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 02:44:03] 2025-11-24 01:43:56,391 | INFO     | [monitor] control thread has ended
[2025-11-24 02:44:03] 2025-11-24 01:44:01,363 | INFO     | all workflow threads have been joined
[2025-11-24 02:44:03] 2025-11-24 01:44:01,363 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 02:44:03] 2025-11-24 01:44:01,363 | INFO     | traces error code: 0
[2025-11-24 02:44:03] 2025-11-24 01:44:01,364 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 02:44:03] 2025-11-24 01:44:01,679 [wrapper] ==== pilot stdout END ====
[2025-11-24 02:44:03] 2025-11-24 01:44:01,705 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 02:44:03] 2025-11-24 01:44:01,708 [wrapper] pilotpid: 645475
[2025-11-24 02:44:03] 2025-11-24 01:44:01,713 [wrapper] Pilot exit status: 0
[2025-11-24 02:44:03] 2025-11-24 01:44:01,863 [wrapper] pandaids: 6890966802
[2025-11-24 02:44:03] 2025-11-24 01:44:02,283 [wrapper] cleanup supervisor_pilot 3139434 645476
[2025-11-24 02:44:03] 2025-11-24 01:44:02,317 [wrapper] Test setup, not cleaning
[2025-11-24 02:44:03] 2025-11-24 01:44:02,360 [wrapper] apfmon messages muted
[2025-11-24 02:44:03] 2025-11-24 01:44:02,415 [wrapper] ==== wrapper stdout END ====
[2025-11-24 02:44:03] 2025-11-24 01:44:02,471 [wrapper] ==== wrapper stderr END ====
[2025-11-24 02:44:03]  *** Error codes and diagnostics ***
[2025-11-24 02:44:03]     "exeErrorCode": 0,
[2025-11-24 02:44:03]     "exeErrorDiag": "",
[2025-11-24 02:44:03]     "pilotErrorCode": 0,
[2025-11-24 02:44:03]     "pilotErrorDiag": "",
[2025-11-24 02:44:03]  *** Listing of results directory ***
[2025-11-24 02:44:03] insgesamt 1301868
[2025-11-24 02:44:03] -rw-r--r-- 1 boinc boinc    576529 Nov 18 04:56 pilot3.tar.gz
[2025-11-24 02:44:03] -rw-r--r-- 1 boinc boinc      5112 Nov 18 04:57 queuedata.json
[2025-11-24 02:44:03] -rwx------ 1 boinc boinc     36292 Nov 18 04:59 runpilot2-wrapper.sh
[2025-11-24 02:44:03] -rw-r--r-- 1 boinc boinc       100 Nov 23 11:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 02:44:03] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 11:13 run_atlas
[2025-11-24 02:44:03] -rw-r--r-- 1 boinc boinc       105 Nov 23 11:13 job.xml
[2025-11-24 02:44:03] -rw-r--r-- 1 boinc boinc      6665 Nov 23 11:13 init_data.xml
[2025-11-24 02:44:03] -rw-r--r-- 2 boinc boinc 408045104 Nov 23 11:13 EVNT.47483658._000021.pool.root.1
[2025-11-24 02:44:03] -rw-r--r-- 2 boinc boinc     15120 Nov 23 11:13 start_atlas.sh
[2025-11-24 02:44:03] drwxrwx--x 2 boinc boinc      4096 Nov 23 11:13 shared
[2025-11-24 02:44:03] -rw-r--r-- 2 boinc boinc    590104 Nov 23 11:13 input.tar.gz
[2025-11-24 02:44:03] -rw-r--r-- 1 boinc boinc         0 Nov 23 11:13 boinc_lockfile
[2025-11-24 02:44:03] -rw-r--r-- 1 boinc boinc      2771 Nov 23 11:13 pandaJob.out
[2025-11-24 02:44:03] -rw------- 1 boinc boinc    989784 Nov 23 11:16 agis_schedconf.cvmfs.json
[2025-11-24 02:44:03] drwx------ 5 boinc boinc      4096 Nov 23 11:16 pilot3
[2025-11-24 02:44:03] -rw-r--r-- 1 boinc boinc       533 Nov 24 02:09 boinc_task_state.xml
[2025-11-24 02:44:03] -rw------- 1 boinc boinc 902624620 Nov 24 02:40 HITS.47483661._000696.pool.root.1
[2025-11-24 02:44:03] -rw------- 1 boinc boinc      1041 Nov 24 02:41 memory_monitor_summary.json
[2025-11-24 02:44:03] -rw------- 1 boinc boinc   1526164 Nov 24 02:41 agis_ddmendpoints.agis.ALL.json
[2025-11-24 02:44:03] -rw------- 1 boinc boinc   2066904 Nov 24 02:41 log.47483661._000696.job.log.tgz.1
[2025-11-24 02:44:03] -rw------- 1 boinc boinc      7895 Nov 24 02:43 heartbeat.json
[2025-11-24 02:44:03] -rw------- 1 boinc boinc        95 Nov 24 02:43 pilot_heartbeat.json
[2025-11-24 02:44:03] -rw-r--r-- 1 boinc boinc      8192 Nov 24 02:44 boinc_mmap_file
[2025-11-24 02:44:03] -rw-r--r-- 1 boinc boinc        29 Nov 24 02:44 wrapper_checkpoint.txt
[2025-11-24 02:44:03] -rw------- 1 boinc boinc      4946 Nov 24 02:44 pilotlog.txt
[2025-11-24 02:44:03] -rw------- 1 boinc boinc   7193613 Nov 24 02:44 log.47483661._000696.job.log.1
[2025-11-24 02:44:03] -rw------- 1 boinc boinc       353 Nov 24 02:44 output.list
[2025-11-24 02:44:03] -rw-r--r-- 1 boinc boinc       620 Nov 24 02:44 runtime_log
[2025-11-24 02:44:03] -rw------- 1 boinc boinc   9277440 Nov 24 02:44 result.tar.gz
[2025-11-24 02:44:03] -rw-r--r-- 1 boinc boinc      8843 Nov 24 02:44 runtime_log.err
[2025-11-24 02:44:03] -rw------- 1 boinc boinc       673 Nov 24 02:44 Ny7KDmG3Rf8n9Rq4apOajLDm4fhM0noT9bVof3QYDma1qMDmVEVTMo.diag
[2025-11-24 02:44:03] -rw-r--r-- 1 boinc boinc     21547 Nov 24 02:44 stderr.txt
[2025-11-24 02:44:03] HITS file was successfully produced:
[2025-11-24 02:44:03] -rw------- 1 boinc boinc 902624620 Nov 24 02:40 shared/HITS.pool.root.1
[2025-11-24 02:44:03]  *** Contents of shared directory: ***
[2025-11-24 02:44:03] insgesamt 1289620
[2025-11-24 02:44:03] -rw-r--r-- 2 boinc boinc 408045104 Nov 23 11:13 ATLAS.root_0
[2025-11-24 02:44:03] -rw-r--r-- 2 boinc boinc     15120 Nov 23 11:13 start_atlas.sh
[2025-11-24 02:44:03] -rw-r--r-- 2 boinc boinc    590104 Nov 23 11:13 input.tar.gz
[2025-11-24 02:44:03] -rw------- 1 boinc boinc 902624620 Nov 24 02:40 HITS.pool.root.1
[2025-11-24 02:44:03] -rw------- 1 boinc boinc   9277440 Nov 24 02:44 result.tar.gz
02:44:04 (632114): run_atlas exited; CPU time 273076.638657
02:44:04 (632114): called boinc_finish(0)

</stderr_txt>
]]>

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