Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:23:17 (17938): wrapper (7.7.26015): starting
15:23:17 (17938): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 15:23:17] Arguments: --nthreads 12
[2025-11-22 15:23:17] Threads: 12
[2025-11-22 15:23:17] Checking for CVMFS
[2025-11-22 15:23:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 15:23:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 15:23:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 15:23:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 15:23:17] 2.11.2.0 2947 282350 92104 153184 1 81 10416959 20275200 1 130560 1 127292991 99.971 16252878 12689 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 15:23:17] CVMFS is ok
[2025-11-22 15:23:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 15:23:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 15:23:17] Further information can be found at the LHC@home message board.
[2025-11-22 15:23:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 15:23:17] Checking for apptainer binary...
[2025-11-22 15:23:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 15:23:17] Running /usr/bin/apptainer --version
[2025-11-22 15:23:17] apptainer version 1.3.2-1.el7
[2025-11-22 15:23:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 15:23:19] c-205-18.aglt2.org
[2025-11-22 15:23:19] apptainer works
[2025-11-22 15:23:19] Set ATHENA_PROC_NUMBER=12
[2025-11-22 15:23:19] Set ATHENA_CORE_NUMBER=12
[2025-11-22 15:23:19] Starting ATLAS job with PandaID=6895331076
[2025-11-22 15:23:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 22:27:22]  *** The last 200 lines of the pilot log: ***
[2025-11-22 22:27:22] 2025-11-23 03:26:47,284 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 22:27:22] 2025-11-23 03:26:47,419 | INFO     | time since job start (25392s) is within the limit (172800.0s)
[2025-11-22 22:27:22] 2025-11-23 03:26:49,424 | INFO     | time since job start (25394s) is within the limit (172800.0s)
[2025-11-22 22:27:22] 2025-11-23 03:26:49,580 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-22 22:27:22] 2025-11-23 03:26:49,584 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-11-22 22:27:22] 2025-11-23 03:26:49,586 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895331076/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 22:27:22] 2025-11-23 03:26:49,587 | INFO     | extracted standard info from prmon json
[2025-11-22 22:27:22] 2025-11-23 03:26:49,587 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 22:27:22] 2025-11-23 03:26:49,587 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 22:27:22] 2025-11-23 03:26:49,595 | INFO     | fitting pss+swap vs Time
[2025-11-22 22:27:22] 2025-11-23 03:26:49,595 | INFO     | sum of square deviations: 22323056693.836555
[2025-11-22 22:27:22] 2025-11-23 03:26:49,599 | INFO     | sum of deviations: 299340333367.5723
[2025-11-22 22:27:22] 2025-11-23 03:26:49,599 | INFO     | mean x: 1763855702.6971154
[2025-11-22 22:27:22] 2025-11-23 03:26:49,599 | INFO     | mean y: 3429703.060096154
[2025-11-22 22:27:22] 2025-11-23 03:26:49,599 | INFO     | intersect: -23648938397.73983
[2025-11-22 22:27:22] 2025-11-23 03:26:49,600 | INFO     | chi2: 6.5600883241319625
[2025-11-22 22:27:22] 2025-11-23 03:26:49,600 | INFO     | sum of square deviations: 21527792373.640102
[2025-11-22 22:27:22] 2025-11-23 03:26:49,604 | INFO     | sum of deviations: 469639992261.6003
[2025-11-22 22:27:22] 2025-11-23 03:26:49,604 | INFO     | mean x: 1763855550.1995134
[2025-11-22 22:27:22] 2025-11-23 03:26:49,604 | INFO     | mean y: 3462349.00486618
[2025-11-22 22:27:22] 2025-11-23 03:26:49,604 | INFO     | intersect: -38475964271.654755
[2025-11-22 22:27:22] 2025-11-23 03:26:49,605 | INFO     | chi2: 3.1553459428569686
[2025-11-22 22:27:22] 2025-11-23 03:26:49,605 | INFO     | current chi2=3.1553459428569686 (change=51.90086189465312 %)
[2025-11-22 22:27:22] 2025-11-23 03:26:49,606 | INFO     | sum of square deviations: 20751644690.938427
[2025-11-22 22:27:22] 2025-11-23 03:26:49,609 | INFO     | sum of deviations: 518090163110.00305
[2025-11-22 22:27:22] 2025-11-23 03:26:49,609 | INFO     | mean x: 1763855397.7019703
[2025-11-22 22:27:22] 2025-11-23 03:26:49,609 | INFO     | mean y: 3471816.371921182
[2025-11-22 22:27:22] 2025-11-23 03:26:49,610 | INFO     | intersect: -44033333184.28983
[2025-11-22 22:27:22] 2025-11-23 03:26:49,610 | INFO     | chi2: 2.6307480537300836
[2025-11-22 22:27:22] 2025-11-23 03:26:49,610 | INFO     | current chi2=2.6307480537300836 (change=16.62568538053531 %)
[2025-11-22 22:27:22] 2025-11-23 03:26:49,610 | INFO     | right removable region: 405
[2025-11-22 22:27:22] 2025-11-23 03:26:49,611 | INFO     | sum of square deviations: 21527742353.640106
[2025-11-22 22:27:22] 2025-11-23 03:26:49,614 | INFO     | sum of deviations: 156204446968.4647
[2025-11-22 22:27:22] 2025-11-23 03:26:49,615 | INFO     | mean x: 1763855855.1995134
[2025-11-22 22:27:22] 2025-11-23 03:26:49,615 | INFO     | mean y: 3457072.3236009735
[2025-11-22 22:27:22] 2025-11-23 03:26:49,615 | INFO     | intersect: -12795011242.071686
[2025-11-22 22:27:22] 2025-11-23 03:26:49,615 | INFO     | chi2: 4.099768645930846
[2025-11-22 22:27:22] 2025-11-23 03:26:49,615 | INFO     | current chi2=4.099768645930846 (change=37.50436818282731 %)
[2025-11-22 22:27:22] 2025-11-23 03:26:49,616 | INFO     | sum of square deviations: 20751594669.736324
[2025-11-22 22:27:22] 2025-11-23 03:26:49,619 | INFO     | sum of deviations: 123369320598.948
[2025-11-22 22:27:22] 2025-11-23 03:26:49,620 | INFO     | mean x: 1763856007.6970444
[2025-11-22 22:27:22] 2025-11-23 03:26:49,620 | INFO     | mean y: 3463516.706896552
[2025-11-22 22:27:22] 2025-11-23 03:26:49,620 | INFO     | intersect: -10482753121.926115
[2025-11-22 22:27:22] 2025-11-23 03:26:49,620 | INFO     | chi2: 4.033255113839934
[2025-11-22 22:27:22] 2025-11-23 03:26:49,621 | INFO     | current chi2=4.033255113839934 (change=1.6223728174741818 %)
[2025-11-22 22:27:22] 2025-11-23 03:26:49,621 | INFO     | left removable region: 20
[2025-11-22 22:27:22] 2025-11-23 03:26:49,621 | INFO     | sum of square deviations: 17695226664.197475
[2025-11-22 22:27:22] 2025-11-23 03:26:49,624 | INFO     | sum of deviations: 300845639980.2414
[2025-11-22 22:27:22] 2025-11-23 03:26:49,625 | INFO     | mean x: 1763855977.2025974
[2025-11-22 22:27:22] 2025-11-23 03:26:49,625 | INFO     | mean y: 3515364.9584415583
[2025-11-22 22:27:22] 2025-11-23 03:26:49,625 | INFO     | intersect: -29984706338.250565
[2025-11-22 22:27:22] 2025-11-23 03:26:49,625 | INFO     | chi2: 0.03121714658300185
[2025-11-22 22:27:22] 2025-11-23 03:26:49,625 | INFO     | current memory leak: 17.00 B/s (using 385 data points, chi2=0.03)
[2025-11-22 22:27:22] 2025-11-23 03:26:49,626 | INFO     | could have reported an average CPU frequency of 2359 MHz (18 samples)
[2025-11-22 22:27:22] 2025-11-23 03:26:49,626 | INFO     | ..............................
[2025-11-22 22:27:22] 2025-11-23 03:26:49,626 | INFO     | . Timing measurements:
[2025-11-22 22:27:22] 2025-11-23 03:26:49,626 | INFO     | . get job = 0 s
[2025-11-22 22:27:22] 2025-11-23 03:26:49,626 | INFO     | . initial setup = 2 s
[2025-11-22 22:27:22] 2025-11-23 03:26:49,626 | INFO     | . payload setup = 7 s
[2025-11-22 22:27:22] 2025-11-23 03:26:49,626 | INFO     | . stage-in = 0 s
[2025-11-22 22:27:22] 2025-11-23 03:26:49,627 | INFO     | . payload execution = 25356 s
[2025-11-22 22:27:22] 2025-11-23 03:26:49,627 | INFO     | . stage-out = 3 s
[2025-11-22 22:27:22] 2025-11-23 03:26:49,627 | INFO     | . log creation = 0 s
[2025-11-22 22:27:22] 2025-11-23 03:26:49,627 | INFO     | ..............................
[2025-11-22 22:27:22] 2025-11-23 03:26:49,913 | INFO     | 
[2025-11-22 22:27:22] 2025-11-23 03:26:49,915 | INFO     | job summary report
[2025-11-22 22:27:22] 2025-11-23 03:26:49,915 | INFO     | --------------------------------------------------
[2025-11-22 22:27:22] 2025-11-23 03:26:49,915 | INFO     | PanDA job id: 6895331076
[2025-11-22 22:27:22] 2025-11-23 03:26:49,915 | INFO     | task id: 47556149
[2025-11-22 22:27:22] 2025-11-23 03:26:49,915 | INFO     | errors: (none)
[2025-11-22 22:27:22] 2025-11-23 03:26:49,916 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 22:27:22] 2025-11-23 03:26:49,916 | INFO     | pilot state: finished 
[2025-11-22 22:27:22] 2025-11-23 03:26:49,916 | INFO     | transexitcode: 0
[2025-11-22 22:27:22] 2025-11-23 03:26:49,916 | INFO     | exeerrorcode: 0
[2025-11-22 22:27:22] 2025-11-23 03:26:49,916 | INFO     | exeerrordiag: 
[2025-11-22 22:27:22] 2025-11-23 03:26:49,917 | INFO     | exitcode: 0
[2025-11-22 22:27:22] 2025-11-23 03:26:49,917 | INFO     | exitmsg: OK
[2025-11-22 22:27:22] 2025-11-23 03:26:49,917 | INFO     | cpuconsumptiontime: 290630 s
[2025-11-22 22:27:22] 2025-11-23 03:26:49,917 | INFO     | nevents: 1000
[2025-11-22 22:27:22] 2025-11-23 03:26:49,917 | INFO     | neventsw: 0
[2025-11-22 22:27:22] 2025-11-23 03:26:49,917 | INFO     | pid: 28951
[2025-11-22 22:27:22] 2025-11-23 03:26:49,918 | INFO     | pgrp: 28951
[2025-11-22 22:27:22] 2025-11-23 03:26:49,918 | INFO     | corecount: 12
[2025-11-22 22:27:22] 2025-11-23 03:26:49,918 | INFO     | event service: False
[2025-11-22 22:27:22] 2025-11-23 03:26:49,918 | INFO     | sizes: {0: 2298754, 5: 2299016, 11: 2299072, 25368: 2336168, 25371: 2345246, 25378: 2345436}
[2025-11-22 22:27:22] 2025-11-23 03:26:49,918 | INFO     | --------------------------------------------------
[2025-11-22 22:27:22] 2025-11-23 03:26:49,918 | INFO     | 
[2025-11-22 22:27:22] 2025-11-23 03:26:49,919 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 22:27:22] 2025-11-23 03:26:49,944 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 22:27:22] 2025-11-23 03:26:49,944 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 22:27:22] 2025-11-23 03:26:49,945 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 22:27:22] 2025-11-23 03:26:49,945 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 22:27:22] 2025-11-23 03:26:49,945 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 22:27:22] 2025-11-23 03:26:49,945 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 22:27:22] 2025-11-23 03:26:49,945 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 22:27:22] 2025-11-23 03:26:49,945 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 22:27:22] 2025-11-23 03:26:49,946 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 22:27:22] 2025-11-23 03:26:49,946 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 22:27:22] 2025-11-23 03:26:49,946 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 22:27:22] 2025-11-23 03:26:49,946 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 22:27:22] 2025-11-23 03:26:49,946 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 22:27:22] 2025-11-23 03:26:49,946 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 22:27:22] 2025-11-23 03:26:49,946 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 22:27:22] 2025-11-23 03:26:49,947 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 22:27:22] 2025-11-23 03:26:49,947 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 22:27:22] 2025-11-23 03:26:49,947 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 22:27:22] 2025-11-23 03:26:49,947 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 22:27:22] 2025-11-23 03:26:49,947 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 22:27:22] 2025-11-23 03:26:49,948 | INFO     | job 6895331076 has completed (purged errors)
[2025-11-22 22:27:22] 2025-11-23 03:26:49,948 | INFO     | overall cleanup function is called
[2025-11-22 22:27:22] 2025-11-23 03:26:50,965 | INFO     | --- collectZombieJob: --- 10, [28951]
[2025-11-22 22:27:22] 2025-11-23 03:26:50,965 | INFO     | zombie collector waiting for pid 28951
[2025-11-22 22:27:22] 2025-11-23 03:26:50,966 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 22:27:22] 2025-11-23 03:26:50,966 | INFO     | collected zombie processes
[2025-11-22 22:27:22] 2025-11-23 03:26:50,966 | INFO     | will attempt to kill all subprocesses of pid=28951
[2025-11-22 22:27:22] 2025-11-23 03:26:51,061 | INFO     | process IDs to be killed: [28951] (in reverse order)
[2025-11-22 22:27:22] 2025-11-23 03:26:51,111 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 22:27:22] 2025-11-23 03:26:51,111 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 22:27:22] 2025-11-23 03:26:51,115 | INFO     | did not find any defunct processes belonging to 28951
[2025-11-22 22:27:22] 2025-11-23 03:26:51,118 | INFO     | did not find any defunct processes belonging to 28951
[2025-11-22 22:27:22] 2025-11-23 03:26:51,121 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 22:27:22] 2025-11-23 03:26:51,121 | INFO     | ready for new job
[2025-11-22 22:27:22] 2025-11-23 03:26:51,121 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 22:27:22] 2025-11-23 03:26:51,124 | INFO     | ***************************************
[2025-11-22 22:27:22] 2025-11-23 03:26:51,124 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 22:27:22] 2025-11-23 03:26:51,124 | INFO     | ***************************************
[2025-11-22 22:27:22] 2025-11-23 03:26:51,124 | INFO     | 
[2025-11-22 22:27:22] 2025-11-23 03:26:51,125 | INFO     | architecture information:
[2025-11-22 22:27:22] 2025-11-23 03:26:51,126 | INFO     | executing command: cat /etc/os-release
[2025-11-22 22:27:22] 2025-11-23 03:26:51,141 | INFO     | cat /etc/os-release:
[2025-11-22 22:27:22] NAME="CentOS Linux"
[2025-11-22 22:27:22] VERSION="7 (Core)"
[2025-11-22 22:27:22] ID="centos"
[2025-11-22 22:27:22] ID_LIKE="rhel fedora"
[2025-11-22 22:27:22] VERSION_ID="7"
[2025-11-22 22:27:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 22:27:22] ANSI_COLOR="0;31"
[2025-11-22 22:27:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 22:27:22] HOME_URL="https://www.centos.org/"
[2025-11-22 22:27:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 22:27:22] 
[2025-11-22 22:27:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 22:27:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 22:27:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 22:27:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 22:27:22] 
[2025-11-22 22:27:22] 2025-11-23 03:26:51,142 | INFO     | ***************************************
[2025-11-22 22:27:22] 2025-11-23 03:26:51,644 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 22:27:22] 2025-11-23 03:26:51,661 | INFO     | sufficient remaining disk space (28266463232 B)
[2025-11-22 22:27:22] 2025-11-23 03:26:51,662 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 22:27:22] 2025-11-23 03:26:51,662 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 22:27:22] 2025-11-23 03:26:51,662 | INFO     | update_server=False
[2025-11-22 22:27:22] 2025-11-23 03:26:51,662 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 22:27:22] 2025-11-23 03:26:51,663 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 22:27:22] 2025-11-23 03:26:51,663 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 22:27:22] 2025-11-23 03:26:51,663 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 22:27:22] 2025-11-23 03:26:51,664 | INFO     | aborting loop
[2025-11-22 22:27:22] 2025-11-23 03:26:52,133 | INFO     | all payload control threads have been joined
[2025-11-22 22:27:22] 2025-11-23 03:26:52,316 | INFO     | all data control threads have been joined
[2025-11-22 22:27:22] 2025-11-23 03:26:52,668 | INFO     | [job] retrieve thread has finished
[2025-11-22 22:27:22] 2025-11-23 03:26:52,669 | INFO     | [job] queue monitor thread has finished
[2025-11-22 22:27:22] 2025-11-23 03:26:52,670 | INFO     | [job] job monitor thread has finished
[2025-11-22 22:27:22] 2025-11-23 03:26:52,785 | INFO     | [job] validate thread has finished
[2025-11-22 22:27:22] 2025-11-23 03:26:52,802 | INFO     | [payload] failed_post thread has finished
[2025-11-22 22:27:22] 2025-11-23 03:26:53,117 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 22:27:22] 2025-11-23 03:26:53,138 | INFO     | [payload] control thread has finished
[2025-11-22 22:27:22] 2025-11-23 03:26:53,158 | INFO     | all job control threads have been joined
[2025-11-22 22:27:22] 2025-11-23 03:26:53,182 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 22:27:22] 2025-11-23 03:26:53,246 | INFO     | [data] copytool_in thread has finished
[2025-11-22 22:27:22] 2025-11-23 03:26:53,321 | INFO     | [data] control thread has finished
[2025-11-22 22:27:22] 2025-11-23 03:26:53,417 | INFO     | [payload] validate_post thread has finished
[2025-11-22 22:27:22] 2025-11-23 03:26:53,668 | INFO     | [data] copytool_out thread has finished
[2025-11-22 22:27:22] 2025-11-23 03:26:53,673 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 22:27:22] 2025-11-23 03:26:54,032 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 22:27:22] 2025-11-23 03:26:54,163 | INFO     | [job] control thread has finished
[2025-11-22 22:27:22] 2025-11-23 03:26:57,676 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 22:27:22] 2025-11-23 03:27:02,142 | INFO     | job.realtimelogging is not enabled
[2025-11-22 22:27:22] 2025-11-23 03:27:03,148 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 22:27:22] 2025-11-23 03:27:16,468 | INFO     | [monitor] cgroup control has ended
[2025-11-22 22:27:22] 2025-11-23 03:27:17,473 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140181211141952)>', '<ExcThread(monitor, started 140180434425600)>']
[2025-11-22 22:27:22] 2025-11-23 03:27:22,484 | INFO     | all workflow threads have been joined
[2025-11-22 22:27:22] 2025-11-23 03:27:22,484 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 22:27:22] 2025-11-23 03:27:22,484 | INFO     | traces error code: 0
[2025-11-22 22:27:22] 2025-11-23 03:27:22,485 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 22:27:22] 2025-11-23 03:27:22,630 | INFO     | PID=21624 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 22:27:22] 2025-11-23 03:27:22,630 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 22:27:22] 2025-11-23 03:27:22,630 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 22:27:22] 2025-11-23 03:27:22,630 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 22:27:22] 2025-11-23 03:27:22,631 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 22:27:22] 2025-11-23 03:27:22,631 | INFO     | [monitor] control thread has ended
[2025-11-22 22:27:22] 2025-11-23 03:27:22,736 [wrapper] ==== pilot stdout END ====
[2025-11-22 22:27:22] 2025-11-23 03:27:22,740 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 22:27:22] 2025-11-23 03:27:22,743 [wrapper] pilotpid: 21624
[2025-11-22 22:27:22] 2025-11-23 03:27:22,747 [wrapper] Pilot exit status: 0
[2025-11-22 22:27:22] 2025-11-23 03:27:22,761 [wrapper] pandaids: 6895331076
[2025-11-22 22:27:22] 2025-11-23 03:27:22,809 [wrapper] cleanup supervisor_pilot 26342 21625
[2025-11-22 22:27:22] 2025-11-23 03:27:22,813 [wrapper] Test setup, not cleaning
[2025-11-22 22:27:22] 2025-11-23 03:27:22,817 [wrapper] apfmon messages muted
[2025-11-22 22:27:22] 2025-11-23 03:27:22,821 [wrapper] ==== wrapper stdout END ====
[2025-11-22 22:27:22] 2025-11-23 03:27:22,825 [wrapper] ==== wrapper stderr END ====
[2025-11-22 22:27:22]  *** Error codes and diagnostics ***
[2025-11-22 22:27:22]     "exeErrorCode": 0,
[2025-11-22 22:27:22]     "exeErrorDiag": "",
[2025-11-22 22:27:22]     "pilotErrorCode": 0,
[2025-11-22 22:27:22]     "pilotErrorDiag": "",
[2025-11-22 22:27:22]  *** Listing of results directory ***
[2025-11-22 22:27:22] total 1298788
[2025-11-22 22:27:22] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 17:05 pilot3.tar.gz
[2025-11-22 22:27:22] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 17:25 queuedata.json
[2025-11-22 22:27:22] -rwx------ 1 boincer umatlas     36292 Nov 21 17:26 runpilot2-wrapper.sh
[2025-11-22 22:27:22] -rw-r--r-- 1 boincer umatlas       100 Nov 22 15:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 22:27:22] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 15:23 run_atlas
[2025-11-22 22:27:22] -rw-r--r-- 1 boincer umatlas       105 Nov 22 15:23 job.xml
[2025-11-22 22:27:22] -rw-r--r-- 2 boincer umatlas 405591247 Nov 22 15:23 EVNT.47483658._001045.pool.root.1
[2025-11-22 22:27:22] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 15:23 start_atlas.sh
[2025-11-22 22:27:22] drwxrwx--x 2 boincer umatlas      4096 Nov 22 15:23 shared
[2025-11-22 22:27:22] -rw-r--r-- 2 boincer umatlas    590100 Nov 22 15:23 input.tar.gz
[2025-11-22 22:27:22] -rw-r--r-- 1 boincer umatlas         0 Nov 22 15:23 boinc_lockfile
[2025-11-22 22:27:22] -rw-r--r-- 1 boincer umatlas      2784 Nov 22 15:23 pandaJob.out
[2025-11-22 22:27:22] -rw------- 1 boincer umatlas        57 Nov 22 15:23 setup.sh.local
[2025-11-22 22:27:22] -rw------- 1 boincer umatlas    989768 Nov 22 15:23 agis_schedconf.cvmfs.json
[2025-11-22 22:27:22] drwx------ 5 boincer umatlas      4096 Nov 22 15:23 pilot3
[2025-11-22 22:27:22] -rw-r--r-- 1 boincer umatlas       533 Nov 22 22:17 boinc_task_state.xml
[2025-11-22 22:27:22] -rw-r--r-- 1 boincer umatlas      5956 Nov 22 22:19 init_data.xml
[2025-11-22 22:27:22] -rw------- 1 boincer umatlas 908982555 Nov 22 22:26 HITS.47556149._000312.pool.root.1
[2025-11-22 22:27:22] -rw------- 1 boincer umatlas        95 Nov 22 22:26 pilot_heartbeat.json
[2025-11-22 22:27:22] -rw------- 1 boincer umatlas      1065 Nov 22 22:26 memory_monitor_summary.json
[2025-11-22 22:27:22] -rw------- 1 boincer umatlas   1526164 Nov 22 22:26 agis_ddmendpoints.agis.ALL.json
[2025-11-22 22:27:22] -rw------- 1 boincer umatlas   2170700 Nov 22 22:26 log.47556149._000312.job.log.tgz.1
[2025-11-22 22:27:22] -rw------- 1 boincer umatlas      8660 Nov 22 22:26 heartbeat.json
[2025-11-22 22:27:22] -rw-r--r-- 1 boincer umatlas        29 Nov 22 22:26 wrapper_checkpoint.txt
[2025-11-22 22:27:22] -rw-r--r-- 1 boincer umatlas      8192 Nov 22 22:26 boinc_mmap_file
[2025-11-22 22:27:22] -rw------- 1 boincer umatlas       745 Nov 22 22:27 pilotlog.txt
[2025-11-22 22:27:22] -rw------- 1 boincer umatlas   3559680 Nov 22 22:27 log.47556149._000312.job.log.1
[2025-11-22 22:27:22] -rw------- 1 boincer umatlas       353 Nov 22 22:27 output.list
[2025-11-22 22:27:22] -rw-r--r-- 1 boincer umatlas       620 Nov 22 22:27 runtime_log
[2025-11-22 22:27:22] -rw------- 1 boincer umatlas   5754880 Nov 22 22:27 result.tar.gz
[2025-11-22 22:27:22] -rw-r--r-- 1 boincer umatlas      9345 Nov 22 22:27 runtime_log.err
[2025-11-22 22:27:22] -rw------- 1 boincer umatlas       670 Nov 22 22:27 jXzKDmjlog8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKqHKDmb6DI9n.diag
[2025-11-22 22:27:22] -rw-r--r-- 1 boincer umatlas     21285 Nov 22 22:27 stderr.txt
[2025-11-22 22:27:22] HITS file was successfully produced:
[2025-11-22 22:27:22] -rw------- 1 boincer umatlas 908982555 Nov 22 22:26 shared/HITS.pool.root.1
[2025-11-22 22:27:22]  *** Contents of shared directory: ***
[2025-11-22 22:27:22] total 1289988
[2025-11-22 22:27:22] -rw-r--r-- 2 boincer umatlas 405591247 Nov 22 15:23 ATLAS.root_0
[2025-11-22 22:27:22] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 15:23 start_atlas.sh
[2025-11-22 22:27:22] -rw-r--r-- 2 boincer umatlas    590100 Nov 22 15:23 input.tar.gz
[2025-11-22 22:27:22] -rw------- 1 boincer umatlas 908982555 Nov 22 22:26 HITS.pool.root.1
[2025-11-22 22:27:22] -rw------- 1 boincer umatlas   5754880 Nov 22 22:27 result.tar.gz
22:27:24 (17938): run_atlas exited; CPU time 283956.899155
22:27:24 (17938): called boinc_finish(0)

</stderr_txt>
]]>

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