Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:03:42 (20548): wrapper (7.7.26015): starting
11:03:42 (20548): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 11:03:42] Arguments: --nthreads 8
[2025-11-25 11:03:42] Threads: 8
[2025-11-25 11:03:42] Checking for CVMFS
[2025-11-25 11:03:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 11:03:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 11:03:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 11:03:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 11:03:45] 2.11.2.0 942 170591 125380 153277 3 85 25111284 25165824 4632 130560 12 59060053 99.906 30345565 2320 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 11:03:45] CVMFS is ok
[2025-11-25 11:03:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 11:03:45] Checking for apptainer binary...
[2025-11-25 11:03:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 11:03:45] Running /usr/bin/apptainer --version
[2025-11-25 11:03:45] apptainer version 1.3.2-1.el7
[2025-11-25 11:03:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 11:03:52] cg-vwn460.simple-grid.lan
[2025-11-25 11:03:52] apptainer works
[2025-11-25 11:03:52] Set ATHENA_PROC_NUMBER=8
[2025-11-25 11:03:52] Set ATHENA_CORE_NUMBER=8
[2025-11-25 11:03:52] Starting ATLAS job with PandaID=6895330941
[2025-11-25 11:03:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 10:06:08]  *** The last 200 lines of the pilot log: ***
[2025-11-26 10:06:08] 2025-11-26 09:05:01,789 | INFO     | time since job start (82648s) is within the limit (172800.0s)
[2025-11-26 10:06:08] 2025-11-26 09:05:02,324 | INFO     | monitor loop #5583: job 0:6895330941 is in state 'finished'
[2025-11-26 10:06:08] 2025-11-26 09:05:02,324 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 10:06:08] 2025-11-26 09:05:03,797 | INFO     | time since job start (82650s) is within the limit (172800.0s)
[2025-11-26 10:06:08] 2025-11-26 09:05:04,828 | INFO     | monitor loop #5584: job 0:6895330941 is in state 'finished'
[2025-11-26 10:06:08] 2025-11-26 09:05:04,828 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 10:06:08] 2025-11-26 09:05:05,806 | INFO     | time since job start (82652s) is within the limit (172800.0s)
[2025-11-26 10:06:08] 2025-11-26 09:05:07,333 | INFO     | monitor loop #5585: job 0:6895330941 is in state 'finished'
[2025-11-26 10:06:08] 2025-11-26 09:05:07,333 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 10:06:08] 2025-11-26 09:05:07,813 | INFO     | time since job start (82654s) is within the limit (172800.0s)
[2025-11-26 10:06:08] 2025-11-26 09:05:09,823 | INFO     | time since job start (82656s) is within the limit (172800.0s)
[2025-11-26 10:06:08] 2025-11-26 09:05:09,845 | INFO     | monitor loop #5586: job 0:6895330941 is in state 'finished'
[2025-11-26 10:06:08] 2025-11-26 09:05:09,845 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 10:06:08] 2025-11-26 09:05:11,583 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 10:06:08] 2025-11-26 09:05:11,584 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2250.0
[2025-11-26 10:06:08] 2025-11-26 09:05:11,586 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6895330941/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 10:06:08] 2025-11-26 09:05:11,586 | INFO     | extracted standard info from prmon json
[2025-11-26 10:06:08] 2025-11-26 09:05:11,587 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 10:06:08] 2025-11-26 09:05:11,587 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 10:06:08] 2025-11-26 09:05:11,610 | INFO     | fitting pss+swap vs Time
[2025-11-26 10:06:08] 2025-11-26 09:05:11,612 | INFO     | sum of square deviations: 756158566472.4824
[2025-11-26 10:06:08] 2025-11-26 09:05:11,666 | INFO     | sum of deviations: 2793693661863.403
[2025-11-26 10:06:08] 2025-11-26 09:05:11,666 | INFO     | mean x: 1764106786.5668647
[2025-11-26 10:06:08] 2025-11-26 09:05:11,666 | INFO     | mean y: 2832101.995542348
[2025-11-26 10:06:08] 2025-11-26 09:05:11,666 | INFO     | intersect: -6514814020.130899
[2025-11-26 10:06:08] 2025-11-26 09:05:11,668 | INFO     | chi2: 26.995146121220845
[2025-11-26 10:06:08] 2025-11-26 09:05:11,670 | INFO     | sum of square deviations: 747763526104.2667
[2025-11-26 10:06:08] 2025-11-26 09:05:11,724 | INFO     | sum of deviations: 3256696398529.834
[2025-11-26 10:06:08] 2025-11-26 09:05:11,724 | INFO     | mean x: 1764106634.0708427
[2025-11-26 10:06:08] 2025-11-26 09:05:11,724 | INFO     | mean y: 2840510.2334079044
[2025-11-26 10:06:08] 2025-11-26 09:05:11,725 | INFO     | intersect: -7680283259.833985
[2025-11-26 10:06:08] 2025-11-26 09:05:11,726 | INFO     | chi2: 23.4883568704437
[2025-11-26 10:06:08] 2025-11-26 09:05:11,726 | INFO     | current chi2=23.4883568704437 (change=12.990443670984481 %)
[2025-11-26 10:06:08] 2025-11-26 09:05:11,727 | INFO     | right removable region: 1340
[2025-11-26 10:06:08] 2025-11-26 09:05:11,729 | INFO     | sum of square deviations: 747762650144.2661
[2025-11-26 10:06:08] 2025-11-26 09:05:11,780 | INFO     | sum of deviations: 2229481688108.899
[2025-11-26 10:06:08] 2025-11-26 09:05:11,780 | INFO     | mean x: 1764106939.0708427
[2025-11-26 10:06:08] 2025-11-26 09:05:11,780 | INFO     | mean y: 2842349.7800149145
[2025-11-26 10:06:08] 2025-11-26 09:05:11,780 | INFO     | intersect: -5256907004.865448
[2025-11-26 10:06:08] 2025-11-26 09:05:11,782 | INFO     | chi2: 22.22572917085833
[2025-11-26 10:06:08] 2025-11-26 09:05:11,782 | INFO     | current chi2=22.22572917085833 (change=17.667683401103297 %)
[2025-11-26 10:06:08] 2025-11-26 09:05:11,782 | INFO     | left removable region: 10
[2025-11-26 10:06:08] 2025-11-26 09:05:11,784 | INFO     | sum of square deviations: 729511911810.0518
[2025-11-26 10:06:08] 2025-11-26 09:05:11,835 | INFO     | time since job start (82658s) is within the limit (172800.0s)
[2025-11-26 10:06:08] 2025-11-26 09:05:11,847 | INFO     | sum of deviations: 2285325763773.529
[2025-11-26 10:06:08] 2025-11-26 09:05:11,856 | INFO     | mean x: 1764106908.5796993
[2025-11-26 10:06:08] 2025-11-26 09:05:11,856 | INFO     | mean y: 2861902.160150376
[2025-11-26 10:06:08] 2025-11-26 09:05:11,856 | INFO     | intersect: -5523516629.788736
[2025-11-26 10:06:08] 2025-11-26 09:05:11,858 | INFO     | chi2: 14.213014561953987
[2025-11-26 10:06:08] 2025-11-26 09:05:11,858 | INFO     | current memory leak: 3.13 B/s (using 1330 data points, chi2=14.21)
[2025-11-26 10:06:08] 2025-11-26 09:05:11,859 | INFO     | could have reported an average CPU frequency of 2250 MHz (46 samples)
[2025-11-26 10:06:08] 2025-11-26 09:05:11,860 | INFO     | ..............................
[2025-11-26 10:06:08] 2025-11-26 09:05:11,860 | INFO     | . Timing measurements:
[2025-11-26 10:06:08] 2025-11-26 09:05:11,860 | INFO     | . get job = 0 s
[2025-11-26 10:06:08] 2025-11-26 09:05:11,860 | INFO     | . initial setup = 5 s
[2025-11-26 10:06:08] 2025-11-26 09:05:11,860 | INFO     | . payload setup = 162 s
[2025-11-26 10:06:08] 2025-11-26 09:05:11,860 | INFO     | . stage-in = 0 s
[2025-11-26 10:06:08] 2025-11-26 09:05:11,860 | INFO     | . payload execution = 82206 s
[2025-11-26 10:06:08] 2025-11-26 09:05:11,860 | INFO     | . stage-out = 6 s
[2025-11-26 10:06:08] 2025-11-26 09:05:11,860 | INFO     | . log creation = 2 s
[2025-11-26 10:06:08] 2025-11-26 09:05:11,861 | INFO     | ..............................
[2025-11-26 10:06:08] 2025-11-26 09:05:11,995 | INFO     | 
[2025-11-26 10:06:08] 2025-11-26 09:05:11,995 | INFO     | job summary report
[2025-11-26 10:06:08] 2025-11-26 09:05:11,995 | INFO     | --------------------------------------------------
[2025-11-26 10:06:08] 2025-11-26 09:05:11,995 | INFO     | PanDA job id: 6895330941
[2025-11-26 10:06:08] 2025-11-26 09:05:11,995 | INFO     | task id: 47556137
[2025-11-26 10:06:08] 2025-11-26 09:05:11,995 | INFO     | errors: (none)
[2025-11-26 10:06:08] 2025-11-26 09:05:11,996 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 10:06:08] 2025-11-26 09:05:11,996 | INFO     | pilot state: finished 
[2025-11-26 10:06:08] 2025-11-26 09:05:11,996 | INFO     | transexitcode: 0
[2025-11-26 10:06:08] 2025-11-26 09:05:11,996 | INFO     | exeerrorcode: 0
[2025-11-26 10:06:08] 2025-11-26 09:05:11,996 | INFO     | exeerrordiag: 
[2025-11-26 10:06:08] 2025-11-26 09:05:11,996 | INFO     | exitcode: 0
[2025-11-26 10:06:08] 2025-11-26 09:05:11,996 | INFO     | exitmsg: OK
[2025-11-26 10:06:08] 2025-11-26 09:05:11,997 | INFO     | cpuconsumptiontime: 308405 s
[2025-11-26 10:06:08] 2025-11-26 09:05:11,997 | INFO     | nevents: 1000
[2025-11-26 10:06:08] 2025-11-26 09:05:11,997 | INFO     | neventsw: 0
[2025-11-26 10:06:08] 2025-11-26 09:05:11,997 | INFO     | pid: 30992
[2025-11-26 10:06:08] 2025-11-26 09:05:11,997 | INFO     | pgrp: 30992
[2025-11-26 10:06:08] 2025-11-26 09:05:11,997 | INFO     | corecount: 8
[2025-11-26 10:06:08] 2025-11-26 09:05:11,997 | INFO     | event service: False
[2025-11-26 10:06:08] 2025-11-26 09:05:11,997 | INFO     | sizes: {0: 2284087, 1: 2284342, 2: 2284342, 12: 2284370, 23: 2284398, 34: 2284426, 44: 2284582, 55: 2284610, 66: 2284638, 77: 2284666, 87: 2284722, 92: 2285292, 98
[2025-11-26 10:06:08] 2025-11-26 09:05:11,997 | INFO     | --------------------------------------------------
[2025-11-26 10:06:08] 2025-11-26 09:05:11,998 | INFO     | 
[2025-11-26 10:06:08] 2025-11-26 09:05:11,998 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-26 10:06:08] 2025-11-26 09:05:12,243 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 10:06:08] 2025-11-26 09:05:12,243 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 10:06:08] 2025-11-26 09:05:12,244 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 10:06:08] 2025-11-26 09:05:12,244 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 10:06:08] 2025-11-26 09:05:12,245 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 10:06:08] 2025-11-26 09:05:12,245 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 10:06:08] 2025-11-26 09:05:12,245 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 10:06:08] 2025-11-26 09:05:12,245 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 10:06:08] 2025-11-26 09:05:12,245 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 10:06:08] 2025-11-26 09:05:12,245 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 10:06:08] 2025-11-26 09:05:12,245 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 10:06:08] 2025-11-26 09:05:12,245 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 10:06:08] 2025-11-26 09:05:12,246 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 10:06:08] 2025-11-26 09:05:12,246 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 10:06:08] 2025-11-26 09:05:12,246 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 10:06:08] 2025-11-26 09:05:12,246 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 10:06:08] 2025-11-26 09:05:12,246 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 10:06:08] 2025-11-26 09:05:12,246 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 10:06:08] 2025-11-26 09:05:12,246 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 10:06:08] 2025-11-26 09:05:12,246 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 10:06:08] 2025-11-26 09:05:12,247 | INFO     | job 6895330941 has completed (purged errors)
[2025-11-26 10:06:08] 2025-11-26 09:05:12,247 | INFO     | overall cleanup function is called
[2025-11-26 10:06:08] 2025-11-26 09:05:13,051 | INFO     | PID=24447 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 10:06:08] 2025-11-26 09:05:13,051 | INFO     | .. there are 9 such processes running
[2025-11-26 10:06:08] 2025-11-26 09:05:13,270 | INFO     | --- collectZombieJob: --- 10, [30992]
[2025-11-26 10:06:08] 2025-11-26 09:05:13,271 | INFO     | zombie collector waiting for pid 30992
[2025-11-26 10:06:08] 2025-11-26 09:05:13,271 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 10:06:08] 2025-11-26 09:05:13,271 | INFO     | collected zombie processes
[2025-11-26 10:06:08] 2025-11-26 09:05:13,271 | INFO     | will attempt to kill all subprocesses of pid=30992
[2025-11-26 10:06:08] 2025-11-26 09:05:13,416 | INFO     | process IDs to be killed: [30992] (in reverse order)
[2025-11-26 10:06:08] 2025-11-26 09:05:14,088 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 10:06:08] 2025-11-26 09:05:14,088 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 10:06:08] 2025-11-26 09:05:14,091 | INFO     | did not find any defunct processes belonging to 30992
[2025-11-26 10:06:08] 2025-11-26 09:05:14,093 | INFO     | did not find any defunct processes belonging to 30992
[2025-11-26 10:06:08] 2025-11-26 09:05:14,133 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 10:06:08] 2025-11-26 09:05:14,133 | INFO     | ready for new job
[2025-11-26 10:06:08] 2025-11-26 09:05:14,133 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 10:06:08] 2025-11-26 09:05:14,138 | INFO     | ***************************************
[2025-11-26 10:06:08] 2025-11-26 09:05:14,138 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 10:06:08] 2025-11-26 09:05:14,138 | INFO     | ***************************************
[2025-11-26 10:06:08] 2025-11-26 09:05:14,138 | INFO     | 
[2025-11-26 10:06:08] 2025-11-26 09:05:14,139 | INFO     | pilot is running in a VM
[2025-11-26 10:06:08] 2025-11-26 09:05:14,139 | INFO     | architecture information:
[2025-11-26 10:06:08] 2025-11-26 09:05:14,150 | INFO     | executing command: cat /etc/os-release
[2025-11-26 10:06:08] 2025-11-26 09:05:14,455 | INFO     | cat /etc/os-release:
[2025-11-26 10:06:08] NAME="CentOS Linux"
[2025-11-26 10:06:08] VERSION="7 (Core)"
[2025-11-26 10:06:08] ID="centos"
[2025-11-26 10:06:08] ID_LIKE="rhel fedora"
[2025-11-26 10:06:08] VERSION_ID="7"
[2025-11-26 10:06:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 10:06:08] ANSI_COLOR="0;31"
[2025-11-26 10:06:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 10:06:08] HOME_URL="https://www.centos.org/"
[2025-11-26 10:06:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 10:06:08] 
[2025-11-26 10:06:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 10:06:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 10:06:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 10:06:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 10:06:08] 
[2025-11-26 10:06:08] 2025-11-26 09:05:14,455 | INFO     | ***************************************
[2025-11-26 10:06:08] 2025-11-26 09:05:14,959 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-26 10:06:08] 2025-11-26 09:05:15,192 | INFO     | sufficient remaining disk space (495051603968 B)
[2025-11-26 10:06:08] 2025-11-26 09:05:15,193 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 10:06:08] 2025-11-26 09:05:15,193 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 10:06:08] 2025-11-26 09:05:15,193 | INFO     | update_server=False
[2025-11-26 10:06:08] 2025-11-26 09:05:15,193 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 10:06:08] 2025-11-26 09:05:15,196 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 10:06:08] 2025-11-26 09:05:15,843 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 10:06:08] 2025-11-26 09:05:15,869 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:06:08] 2025-11-26 09:05:15,869 | INFO     | aborting loop
[2025-11-26 10:06:08] 2025-11-26 09:05:16,199 | INFO     | [job] retrieve thread has finished
[2025-11-26 10:06:08] 2025-11-26 09:05:16,223 | INFO     | all data control threads have been joined
[2025-11-26 10:06:08] 2025-11-26 09:05:16,490 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 10:06:08] 2025-11-26 09:05:16,522 | INFO     | all payload control threads have been joined
[2025-11-26 10:06:08] 2025-11-26 09:05:16,543 | INFO     | [job] validate thread has finished
[2025-11-26 10:06:08] 2025-11-26 09:05:16,578 | INFO     | [data] copytool_in thread has finished
[2025-11-26 10:06:08] 2025-11-26 09:05:16,737 | INFO     | all job control threads have been joined
[2025-11-26 10:06:08] 2025-11-26 09:05:16,743 | INFO     | [payload] validate_post thread has finished
[2025-11-26 10:06:08] 2025-11-26 09:05:16,875 | INFO     | [job] job monitor thread has finished
[2025-11-26 10:06:08] 2025-11-26 09:05:17,011 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:06:08] 2025-11-26 09:05:17,203 | INFO     | [data] copytool_out thread has finished
[2025-11-26 10:06:08] 2025-11-26 09:05:17,225 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 10:06:08] 2025-11-26 09:05:17,229 | INFO     | [data] control thread has finished
[2025-11-26 10:06:08] 2025-11-26 09:05:17,312 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 10:06:08] 2025-11-26 09:05:17,476 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 10:06:08] 2025-11-26 09:05:17,528 | INFO     | [payload] control thread has finished
[2025-11-26 10:06:08] 2025-11-26 09:05:17,591 | INFO     | [payload] failed_post thread has finished
[2025-11-26 10:06:08] 2025-11-26 09:05:17,743 | INFO     | [job] control thread has finished
[2025-11-26 10:06:08] 2025-11-26 09:05:18,017 | INFO     | [job] queue monitor thread has finished
[2025-11-26 10:06:08] 2025-11-26 09:05:19,852 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 10:06:08] 2025-11-26 09:05:45,212 | INFO     | PID=24447 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 10:06:08] 2025-11-26 09:05:45,212 | INFO     | .. there are 9 such processes running
[2025-11-26 10:06:08] 2025-11-26 09:05:45,212 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 10:06:08] 2025-11-26 09:05:45,212 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 10:06:08] 2025-11-26 09:05:45,213 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 10:06:08] 2025-11-26 09:05:56,970 | INFO     | [monitor] cgroup control has ended
[2025-11-26 10:06:08] 2025-11-26 09:05:58,928 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139690288179008)>', '<ExcThread(monitor, started 139689692481280)>']
[2025-11-26 10:06:08] 2025-11-26 09:05:59,293 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 10:06:08] 2025-11-26 09:05:59,294 | INFO     | [monitor] control thread has ended
[2025-11-26 10:06:08] 2025-11-26 09:06:03,954 | INFO     | all workflow threads have been joined
[2025-11-26 10:06:08] 2025-11-26 09:06:03,954 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 10:06:08] 2025-11-26 09:06:03,954 | INFO     | traces error code: 0
[2025-11-26 10:06:08] 2025-11-26 09:06:03,954 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 10:06:08] 2025-11-26 09:06:04,229 [wrapper] ==== pilot stdout END ====
[2025-11-26 10:06:08] 2025-11-26 09:06:04,322 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 10:06:08] 2025-11-26 09:06:04,411 [wrapper] pilotpid: 24447
[2025-11-26 10:06:08] 2025-11-26 09:06:04,499 [wrapper] Pilot exit status: 0
[2025-11-26 10:06:08] 2025-11-26 09:06:04,851 [wrapper] pandaids: 6895330941
[2025-11-26 10:06:08] 2025-11-26 09:06:05,383 [wrapper] cleanup supervisor_pilot 30011 24448
[2025-11-26 10:06:08] 2025-11-26 09:06:05,406 [wrapper] Test setup, not cleaning
[2025-11-26 10:06:08] 2025-11-26 09:06:05,508 [wrapper] apfmon messages muted
[2025-11-26 10:06:08] 2025-11-26 09:06:05,620 [wrapper] ==== wrapper stdout END ====
[2025-11-26 10:06:08] 2025-11-26 09:06:05,721 [wrapper] ==== wrapper stderr END ====
[2025-11-26 10:06:08]  *** Error codes and diagnostics ***
[2025-11-26 10:06:08]     "exeErrorCode": 0,
[2025-11-26 10:06:08]     "exeErrorDiag": "",
[2025-11-26 10:06:08]     "pilotErrorCode": 0,
[2025-11-26 10:06:08]     "pilotErrorDiag": "",
[2025-11-26 10:06:08]  *** Listing of results directory ***
[2025-11-26 10:06:08] total 1318476
[2025-11-26 10:06:08] -rw-r--r--. 1 boinc boinc    576529 Nov 21 22:55 pilot3.tar.gz
[2025-11-26 10:06:08] -rw-r--r--. 1 boinc boinc      5112 Nov 21 23:02 queuedata.json
[2025-11-26 10:06:08] -rwx------. 1 boinc boinc     36292 Nov 21 23:03 runpilot2-wrapper.sh
[2025-11-26 10:06:08] -rw-r--r--. 1 boinc boinc       100 Nov 25 11:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 10:06:08] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 11:03 run_atlas
[2025-11-26 10:06:08] -rw-r--r--. 1 boinc boinc       105 Nov 25 11:03 job.xml
[2025-11-26 10:06:08] -rw-r--r--. 1 boinc boinc      6392 Nov 25 11:03 init_data.xml
[2025-11-26 10:06:08] -rw-r--r--. 2 boinc boinc 410277042 Nov 25 11:03 EVNT.47483658._000150.pool.root.1
[2025-11-26 10:06:08] -rw-r--r--. 2 boinc boinc     15847 Nov 25 11:03 start_atlas.sh
[2025-11-26 10:06:08] drwxrwx--x. 2 boinc boinc        68 Nov 25 11:03 shared
[2025-11-26 10:06:08] -rw-r--r--. 2 boinc boinc    590104 Nov 25 11:03 input.tar.gz
[2025-11-26 10:06:08] -rw-r--r--. 1 boinc boinc         0 Nov 25 11:03 boinc_lockfile
[2025-11-26 10:06:08] -rw-r--r--. 1 boinc boinc      2785 Nov 25 11:03 pandaJob.out
[2025-11-26 10:06:08] -rw-------. 1 boinc boinc    991894 Nov 25 11:07 agis_schedconf.cvmfs.json
[2025-11-26 10:06:08] drwx------. 5 boinc boinc      4096 Nov 25 11:07 pilot3
[2025-11-26 10:06:08] -rw-r--r--. 1 boinc boinc       533 Nov 26 09:39 boinc_task_state.xml
[2025-11-26 10:06:08] -rw-------. 1 boinc boinc 908974563 Nov 26 10:02 HITS.47556137._001496.pool.root.1
[2025-11-26 10:06:08] -rw-------. 1 boinc boinc      1031 Nov 26 10:03 memory_monitor_summary.json
[2025-11-26 10:06:08] -rw-------. 1 boinc boinc   1516240 Nov 26 10:03 agis_ddmendpoints.agis.ALL.json
[2025-11-26 10:06:08] -rw-------. 1 boinc boinc   2440354 Nov 26 10:03 log.47556137._001496.job.log.tgz.1
[2025-11-26 10:06:08] -rw-------. 1 boinc boinc        95 Nov 26 10:04 pilot_heartbeat.json
[2025-11-26 10:06:08] -rw-------. 1 boinc boinc      7940 Nov 26 10:05 heartbeat.json
[2025-11-26 10:06:08] -rw-r--r--. 1 boinc boinc      8192 Nov 26 10:05 boinc_mmap_file
[2025-11-26 10:06:08] -rw-r--r--. 1 boinc boinc        29 Nov 26 10:05 wrapper_checkpoint.txt
[2025-11-26 10:06:08] -rw-------. 1 boinc boinc      4884 Nov 26 10:06 pilotlog.txt
[2025-11-26 10:06:08] -rw-------. 1 boinc boinc  11042234 Nov 26 10:06 log.47556137._001496.job.log.1
[2025-11-26 10:06:08] -rw-------. 1 boinc boinc       353 Nov 26 10:06 output.list
[2025-11-26 10:06:08] -rw-r--r--. 1 boinc boinc       620 Nov 26 10:06 runtime_log
[2025-11-26 10:06:08] -rw-------. 1 boinc boinc  13506560 Nov 26 10:06 result.tar.gz
[2025-11-26 10:06:08] -rw-r--r--. 1 boinc boinc      8817 Nov 26 10:06 runtime_log.err
[2025-11-26 10:06:08] -rw-------. 1 boinc boinc       662 Nov 26 10:06 byNKDmSPog8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrjJKDmi2EHbm.diag
[2025-11-26 10:06:08] -rw-r--r--. 1 boinc boinc     21495 Nov 26 10:06 stderr.txt
[2025-11-26 10:06:08] HITS file was successfully produced:
[2025-11-26 10:06:08] -rw-------. 1 boinc boinc 908974563 Nov 26 10:02 shared/HITS.pool.root.1
[2025-11-26 10:06:08]  *** Contents of shared directory: ***
[2025-11-26 10:06:08] total 1302124
[2025-11-26 10:06:08] -rw-r--r--. 2 boinc boinc 410277042 Nov 25 11:03 ATLAS.root_0
[2025-11-26 10:06:08] -rw-r--r--. 2 boinc boinc     15847 Nov 25 11:03 start_atlas.sh
[2025-11-26 10:06:08] -rw-r--r--. 2 boinc boinc    590104 Nov 25 11:03 input.tar.gz
[2025-11-26 10:06:08] -rw-------. 1 boinc boinc 908974563 Nov 26 10:02 HITS.pool.root.1
[2025-11-26 10:06:08] -rw-------. 1 boinc boinc  13506560 Nov 26 10:06 result.tar.gz
10:06:10 (20548): run_atlas exited; CPU time 308948.836970
10:06:10 (20548): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN