Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:06:04 (1690960): wrapper (7.7.26015): starting
12:06:04 (1690960): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 12:06:04] Arguments: --nthreads 12
[2025-11-22 12:06:04] Threads: 12
[2025-11-22 12:06:04] Checking for CVMFS
[2025-11-22 12:06:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 12:06:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 12:06:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 12:06:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 12:06:05] 2.11.5.0 3259785 22768 207392 153183 0 449 24819426 45568000 18229 130560 0 220895144 99.789 132178723 13110 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-22 12:06:05] CVMFS is ok
[2025-11-22 12:06:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 12:06:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 12:06:05] Further information can be found at the LHC@home message board.
[2025-11-22 12:06:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 12:06:05] Checking for apptainer binary...
[2025-11-22 12:06:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 12:06:05] Running /usr/bin/apptainer --version
[2025-11-22 12:06:05] apptainer version 1.4.1-1.el9
[2025-11-22 12:06:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 12:06:06] wns0092.triumf.lcg
[2025-11-22 12:06:06] apptainer works
[2025-11-22 12:06:06] Set ATHENA_PROC_NUMBER=12
[2025-11-22 12:06:06] Set ATHENA_CORE_NUMBER=12
[2025-11-22 12:06:06] Starting ATLAS job with PandaID=6895338358
[2025-11-22 12:06:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 12:11:34]  *** The last 200 lines of the pilot log: ***
[2025-11-22 12:11:34] 2025-11-22 20:10:46,657 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 12:11:34] 2025-11-22 20:10:46,657 | WARNING  | wrong length of table data, x=[1763842031.0, 1763842092.0], y=[1396.0, 367940.0] (must be same and length>=4)
[2025-11-22 12:11:34] 2025-11-22 20:10:46,658 | INFO     | could have reported an average CPU frequency of 2687 MHz (4 samples)
[2025-11-22 12:11:34] 2025-11-22 20:10:46,658 | INFO     | ..............................
[2025-11-22 12:11:34] 2025-11-22 20:10:46,658 | INFO     | . Timing measurements:
[2025-11-22 12:11:34] 2025-11-22 20:10:46,658 | INFO     | . get job = 0 s
[2025-11-22 12:11:34] 2025-11-22 20:10:46,658 | INFO     | . initial setup = 3 s
[2025-11-22 12:11:34] 2025-11-22 20:10:46,658 | INFO     | . payload setup = 11 s
[2025-11-22 12:11:34] 2025-11-22 20:10:46,658 | INFO     | . stage-in = 0 s
[2025-11-22 12:11:34] 2025-11-22 20:10:46,658 | INFO     | . payload execution = 95 s
[2025-11-22 12:11:34] 2025-11-22 20:10:46,658 | INFO     | . stage-out = 0 s
[2025-11-22 12:11:34] 2025-11-22 20:10:46,659 | INFO     | . log creation = 0 s
[2025-11-22 12:11:34] 2025-11-22 20:10:46,659 | INFO     | ..............................
[2025-11-22 12:11:34] 2025-11-22 20:10:46,659 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 12:11:34] 2025-11-22 20:10:46,659 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895338358/pilotlog.txt
[2025-11-22 12:11:34] 2025-11-22 20:10:46,671 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-22 12:11:34] - Log from pilotlog.txt -
[2025-11-22 12:11:34] 2025-11-22 20:10:46,656 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895338358/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 12:11:34] 2025-11-22 20:10:46,656 | INFO     | extracted standard info from prmon json
[2025-11-22 12:11:34] 2025-11-22 20:10:46,656 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 12:11:34] 2025-11-22 20:10:46,656 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 12:11:34] 2025-11-22 20:10:46,657 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 12:11:34] 2025-11-22 20:10:46,657 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 12:11:34] 2025-11-22 20:10:46,657 | WARNING  | wrong length of table data, x=[1763842031.0, 1763842092.0], y=[1396.0, 367940.0] (must be same and length>=4)
[2025-11-22 12:11:34] 2025-11-22 20:10:46,658 | INFO     | could have reported an average CPU frequency of 2687 MHz (4 samples)
[2025-11-22 12:11:34] 2025-11-22 20:10:46,658 | INFO     | ..............................
[2025-11-22 12:11:34] 2025-11-22 20:10:46,658 | INFO     | . Timing measurements:
[2025-11-22 12:11:34] 2025-11-22 20:10:46,658 | INFO     | . get job = 0 s
[2025-11-22 12:11:34] 2025-11-22 20:10:46,658 | INFO     | . initial setup = 3 s
[2025-11-22 12:11:34] 2025-11-22 20:10:46,658 | INFO     | . payload setup = 11 s
[2025-11-22 12:11:34] 2025-11-22 20:10:46,658 | INFO     | . stage-in = 0 s
[2025-11-22 12:11:34] 2025-11-22 20:10:46,658 | INFO     | . payload execution = 95 s
[2025-11-22 12:11:34] 2025-11-22 20:10:46,658 | INFO     | . stage-out = 0 s
[2025-11-22 12:11:34] 2025-11-22 20:10:46,659 | INFO     | . log creation = 0 s
[2025-11-22 12:11:34] 2025-11-22 20:10:46,659 | INFO     | ..............................
[2025-11-22 12:11:34] 2025-11-22 20:10:46,659 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 12:11:34] 2025-11-22 20:10:46,659 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895338358/pilotlog.txt
[2025-11-22 12:11:34] 2025-11-22 20:10:46,672 | WARNING  | 
[2025-11-22 12:11:34] [begin log extracts]
[2025-11-22 12:11:34] - Log from pilotlog.txt -
[2025-11-22 12:11:34] 2025-11-22 20:10:46,656 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895338358/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 12:11:34] 2025-11-22 20:10:46,656 | INFO     | extracted standard info from prmon json
[2025-11-22 12:11:34] 2025-11-22 20:10:46,656 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 12:11:34] 2025-11-22 20:10:46,656 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 12:11:34] 2025-11-22 20:10:46,657 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 12:11:34] 2025-11-22 20:10:46,657 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 12:11:34] 2025-11-22 20:10:46,657 | WARNING  | wrong length of table data, x=[1763842031.0, 1763842092.0], y=[1396.0, 367940.0] (must be same and length>=4)
[2025-11-22 12:11:34] 2025-11-22 20:10:46,658 | INFO     | could have reported an average CPU frequency of 2687 MHz (4 samples)
[2025-11-22 12:11:34] 2025-11-22 20:10:46,658 | INFO     | ..............................
[2025-11-22 12:11:34] 2025-11-22 20:10:46,658 | INFO     | . Timing measurements:
[2025-11-22 12:11:34] 2025-11-22 20:10:46,658 | INFO     | . get job = 0 s
[2025-11-22 12:11:34] 2025-11-22 20:10:46,658 | INFO     | . initial setup = 3 s
[2025-11-22 12:11:34] 2025-11-22 20:10:46,658 | INFO     | . payload setup = 11 s
[2025-11-22 12:11:34] 2025-11-22 20:10:46,658 | INFO     | . stage-in = 0 s
[2025-11-22 12:11:34] 2025-11-22 20:10:46,658 | INFO     | . payload execution = 95 s
[2025-11-22 12:11:34] 2025-11-22 20:10:46,658 | INFO     | . stage-out = 0 s
[2025-11-22 12:11:34] 2025-11-22 20:10:46,659 | INFO     | . log creation = 0 s
[2025-11-22 12:11:34] 2025-11-22 20:10:46,659 | INFO     | ..............................
[2025-11-22 12:11:34] 2025-11-22 20:10:46,659 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 12:11:34] 2025-11-22 20:10:46,659 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895338358/pilotlog.txt
[2025-11-22 12:11:34] [end log extracts]
[2025-11-22 12:11:34] 2025-11-22 20:10:46,672 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-22 12:11:34] 2025-11-22 20:10:46,673 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-22 12:11:34] 2025-11-22 20:10:46,730 | INFO     | 
[2025-11-22 12:11:34] 2025-11-22 20:10:46,730 | INFO     | job summary report
[2025-11-22 12:11:34] 2025-11-22 20:10:46,731 | INFO     | --------------------------------------------------
[2025-11-22 12:11:34] 2025-11-22 20:10:46,731 | INFO     | PanDA job id: 6895338358
[2025-11-22 12:11:34] 2025-11-22 20:10:46,731 | INFO     | task id: 47556137
[2025-11-22 12:11:34] 2025-11-22 20:10:46,731 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-22 12:08:29,809 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-22 12:11:34] 2025-11-22 20:10:46,731 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-22 12:11:34] 2025-11-22 20:10:46,731 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 12:11:34] 2025-11-22 20:10:46,731 | INFO     | pilot state: failed 
[2025-11-22 12:11:34] 2025-11-22 20:10:46,731 | INFO     | transexitcode: 65
[2025-11-22 12:11:34] 2025-11-22 20:10:46,731 | INFO     | exeerrorcode: 65
[2025-11-22 12:11:34] 2025-11-22 20:10:46,731 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-22 12:11:34] 2025-11-22 20:10:46,731 | INFO     | exitcode: 65
[2025-11-22 12:11:34] 2025-11-22 20:10:46,731 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-22 12:11:34] 2025-11-22 20:10:46,731 | INFO     | cpuconsumptiontime: 44 s
[2025-11-22 12:11:34] 2025-11-22 20:10:46,731 | INFO     | nevents: 0
[2025-11-22 12:11:34] 2025-11-22 20:10:46,731 | INFO     | neventsw: 0
[2025-11-22 12:11:34] 2025-11-22 20:10:46,731 | INFO     | pid: 1704378
[2025-11-22 12:11:34] 2025-11-22 20:10:46,731 | INFO     | pgrp: 1704378
[2025-11-22 12:11:34] 2025-11-22 20:10:46,731 | INFO     | corecount: 12
[2025-11-22 12:11:34] 2025-11-22 20:10:46,732 | INFO     | event service: False
[2025-11-22 12:11:34] 2025-11-22 20:10:46,732 | INFO     | sizes: {0: 2298702, 9: 2298964, 11: 2298992, 110: 2324413, 111: 2324389, 112: 2328707, 113: 2328891, 240: 2329057}
[2025-11-22 12:11:34] 2025-11-22 20:10:46,732 | INFO     | --------------------------------------------------
[2025-11-22 12:11:34] 2025-11-22 20:10:46,732 | INFO     | 
[2025-11-22 12:11:34] 2025-11-22 20:10:46,732 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-22 12:11:34] 2025-11-22 20:10:46,750 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 12:11:34] 2025-11-22 20:10:46,751 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 12:11:34] 2025-11-22 20:10:46,751 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 12:11:34] 2025-11-22 20:10:46,751 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 12:11:34] 2025-11-22 20:10:46,751 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 12:11:34] 2025-11-22 20:10:46,751 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 12:11:34] 2025-11-22 20:10:46,751 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 12:11:34] 2025-11-22 20:10:46,751 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 12:11:34] 2025-11-22 20:10:46,751 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 12:11:34] 2025-11-22 20:10:46,751 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 12:11:34] 2025-11-22 20:10:46,751 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 12:11:34] 2025-11-22 20:10:46,751 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 12:11:34] 2025-11-22 20:10:46,751 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 12:11:34] 2025-11-22 20:10:46,751 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 12:11:34] 2025-11-22 20:10:46,751 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 12:11:34] 2025-11-22 20:10:46,751 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 12:11:34] 2025-11-22 20:10:46,751 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 12:11:34] 2025-11-22 20:10:46,751 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 12:11:34] 2025-11-22 20:10:46,751 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 12:11:34] 2025-11-22 20:10:46,751 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 12:11:34] 2025-11-22 20:10:46,752 | INFO     | job 6895338358 has completed (purged errors)
[2025-11-22 12:11:34] 2025-11-22 20:10:46,752 | INFO     | overall cleanup function is called
[2025-11-22 12:11:34] 2025-11-22 20:10:47,760 | INFO     | --- collectZombieJob: --- 10, [1704378]
[2025-11-22 12:11:34] 2025-11-22 20:10:47,760 | INFO     | zombie collector waiting for pid 1704378
[2025-11-22 12:11:34] 2025-11-22 20:10:47,760 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 12:11:34] 2025-11-22 20:10:47,760 | INFO     | collected zombie processes
[2025-11-22 12:11:34] 2025-11-22 20:10:47,760 | INFO     | will attempt to kill all subprocesses of pid=1704378
[2025-11-22 12:11:34] 2025-11-22 20:10:47,971 | INFO     | process IDs to be killed: [1704378] (in reverse order)
[2025-11-22 12:11:34] 2025-11-22 20:10:48,108 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 12:11:34] 2025-11-22 20:10:48,109 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 12:11:34] 2025-11-22 20:10:48,116 | INFO     | did not find any defunct processes belonging to 1704378
[2025-11-22 12:11:34] 2025-11-22 20:10:48,124 | INFO     | did not find any defunct processes belonging to 1704378
[2025-11-22 12:11:34] 2025-11-22 20:10:48,125 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 12:11:34] 2025-11-22 20:10:48,125 | INFO     | ready for new job
[2025-11-22 12:11:34] 2025-11-22 20:10:48,125 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 12:11:34] 2025-11-22 20:10:48,126 | INFO     | ***************************************
[2025-11-22 12:11:34] 2025-11-22 20:10:48,127 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 12:11:34] 2025-11-22 20:10:48,127 | INFO     | ***************************************
[2025-11-22 12:11:34] 2025-11-22 20:10:48,127 | INFO     | 
[2025-11-22 12:11:34] 2025-11-22 20:10:48,129 | INFO     | architecture information:
[2025-11-22 12:11:34] 2025-11-22 20:10:48,129 | INFO     | executing command: cat /etc/os-release
[2025-11-22 12:11:34] 2025-11-22 20:10:48,144 | INFO     | cat /etc/os-release:
[2025-11-22 12:11:34] NAME="CentOS Linux"
[2025-11-22 12:11:34] VERSION="7 (Core)"
[2025-11-22 12:11:34] ID="centos"
[2025-11-22 12:11:34] ID_LIKE="rhel fedora"
[2025-11-22 12:11:34] VERSION_ID="7"
[2025-11-22 12:11:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 12:11:34] ANSI_COLOR="0;31"
[2025-11-22 12:11:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 12:11:34] HOME_URL="https://www.centos.org/"
[2025-11-22 12:11:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 12:11:34] 
[2025-11-22 12:11:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 12:11:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 12:11:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 12:11:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 12:11:34] 
[2025-11-22 12:11:34] 2025-11-22 20:10:48,145 | INFO     | ***************************************
[2025-11-22 12:11:34] 2025-11-22 20:10:48,648 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-22 12:11:34] 2025-11-22 20:10:48,703 | INFO     | sufficient remaining disk space (1734843826176 B)
[2025-11-22 12:11:34] 2025-11-22 20:10:48,704 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 12:11:34] 2025-11-22 20:10:48,704 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 12:11:34] 2025-11-22 20:10:48,704 | INFO     | update_server=False
[2025-11-22 12:11:34] 2025-11-22 20:10:48,704 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 12:11:34] 2025-11-22 20:10:48,705 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 12:11:34] 2025-11-22 20:10:48,709 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 12:11:34] 2025-11-22 20:10:48,709 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 12:11:34] 2025-11-22 20:10:49,103 | INFO     | all data control threads have been joined
[2025-11-22 12:11:34] 2025-11-22 20:10:49,209 | INFO     | all payload control threads have been joined
[2025-11-22 12:11:34] 2025-11-22 20:10:49,399 | INFO     | all job control threads have been joined
[2025-11-22 12:11:34] 2025-11-22 20:10:49,507 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 12:11:34] 2025-11-22 20:10:49,507 | INFO     | aborting loop
[2025-11-22 12:11:34] 2025-11-22 20:10:49,715 | INFO     | [job] queue monitor thread has finished
[2025-11-22 12:11:34] 2025-11-22 20:10:49,718 | INFO     | [job] retrieve thread has finished
[2025-11-22 12:11:34] 2025-11-22 20:10:49,783 | INFO     | [data] copytool_in thread has finished
[2025-11-22 12:11:34] 2025-11-22 20:10:49,943 | INFO     | [payload] validate_post thread has finished
[2025-11-22 12:11:34] 2025-11-22 20:10:50,091 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 12:11:34] 2025-11-22 20:10:50,108 | INFO     | [data] control thread has finished
[2025-11-22 12:11:34] 2025-11-22 20:10:50,215 | INFO     | [payload] control thread has finished
[2025-11-22 12:11:34] 2025-11-22 20:10:50,406 | INFO     | [job] control thread has finished
[2025-11-22 12:11:34] 2025-11-22 20:10:50,513 | INFO     | [job] job monitor thread has finished
[2025-11-22 12:11:34] 2025-11-22 20:10:50,590 | INFO     | [job] validate thread has finished
[2025-11-22 12:11:34] 2025-11-22 20:10:50,595 | INFO     | [payload] failed_post thread has finished
[2025-11-22 12:11:34] 2025-11-22 20:10:50,724 | INFO     | [data] copytool_out thread has finished
[2025-11-22 12:11:34] 2025-11-22 20:10:50,737 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 12:11:34] 2025-11-22 20:10:50,760 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 12:11:34] 2025-11-22 20:10:50,821 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 12:11:34] 2025-11-22 20:10:52,724 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 12:11:34] 2025-11-22 20:11:18,468 | INFO     | PID=1697091 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 12:11:34] 2025-11-22 20:11:18,468 | INFO     | .. there are 28 such processes running
[2025-11-22 12:11:34] 2025-11-22 20:11:18,469 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 12:11:34] 2025-11-22 20:11:18,469 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 12:11:34] 2025-11-22 20:11:18,469 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 12:11:34] 2025-11-22 20:11:27,351 | INFO     | [monitor] cgroup control has ended
[2025-11-22 12:11:34] 2025-11-22 20:11:28,356 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140317745821504)>', '<ExcThread(monitor, started 140317353293568)>']
[2025-11-22 12:11:34] 2025-11-22 20:11:28,526 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 12:11:34] 2025-11-22 20:11:28,527 | INFO     | [monitor] control thread has ended
[2025-11-22 12:11:34] 2025-11-22 20:11:33,382 | INFO     | all workflow threads have been joined
[2025-11-22 12:11:34] 2025-11-22 20:11:33,382 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 12:11:34] 2025-11-22 20:11:33,382 | INFO     | traces error code: 0
[2025-11-22 12:11:34] 2025-11-22 20:11:33,382 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 12:11:34] 2025-11-22 20:11:33,521 [wrapper] ==== pilot stdout END ====
[2025-11-22 12:11:34] 2025-11-22 20:11:33,527 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 12:11:34] 2025-11-22 20:11:33,529 [wrapper] pilotpid: 1697091
[2025-11-22 12:11:34] 2025-11-22 20:11:33,530 [wrapper] Pilot exit status: 0
[2025-11-22 12:11:34] 2025-11-22 20:11:33,626 [wrapper] pandaids: 6895338358
[2025-11-22 12:11:34] 2025-11-22 20:11:33,706 [wrapper] cleanup supervisor_pilot 1697110 1697092
[2025-11-22 12:11:34] 2025-11-22 20:11:33,709 [wrapper] Test setup, not cleaning
[2025-11-22 12:11:34] 2025-11-22 20:11:33,711 [wrapper] apfmon messages muted
[2025-11-22 12:11:34] 2025-11-22 20:11:33,713 [wrapper] ==== wrapper stdout END ====
[2025-11-22 12:11:34] 2025-11-22 20:11:33,715 [wrapper] ==== wrapper stderr END ====
[2025-11-22 12:11:34]  *** Error codes and diagnostics ***
[2025-11-22 12:11:34]     "exeErrorCode": 65,
[2025-11-22 12:11:34]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-22 12:11:34]     "pilotErrorCode": 1305,
[2025-11-22 12:11:34]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-22 12:11:34]  *** Listing of results directory ***
[2025-11-22 12:11:34] total 407524
[2025-11-22 12:11:34] -rw-r--r--. 1 boinc boinc    576529 Nov 22 00:40 pilot3.tar.gz
[2025-11-22 12:11:34] -rwx------. 1 boinc boinc     36292 Nov 22 00:42 runpilot2-wrapper.sh
[2025-11-22 12:11:34] -rw-r--r--. 1 boinc boinc      5112 Nov 22 00:42 queuedata.json
[2025-11-22 12:11:34] -rw-r--r--. 1 boinc boinc       100 Nov 22 12:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 12:11:34] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 12:06 run_atlas
[2025-11-22 12:11:34] -rw-r--r--. 1 boinc boinc       105 Nov 22 12:06 job.xml
[2025-11-22 12:11:34] -rw-r--r--. 1 boinc boinc      6595 Nov 22 12:06 init_data.xml
[2025-11-22 12:11:34] -rw-r--r--. 2 boinc boinc 413097382 Nov 22 12:06 EVNT.47483658._000320.pool.root.1
[2025-11-22 12:11:34] -rw-r--r--. 2 boinc boinc     15847 Nov 22 12:06 start_atlas.sh
[2025-11-22 12:11:34] drwxrwx--x. 2 boinc boinc      4096 Nov 22 12:06 shared
[2025-11-22 12:11:34] -rw-r--r--. 2 boinc boinc    590100 Nov 22 12:06 input.tar.gz
[2025-11-22 12:11:34] -rw-r--r--. 1 boinc boinc         0 Nov 22 12:06 boinc_lockfile
[2025-11-22 12:11:34] -rw-r--r--. 1 boinc boinc      2784 Nov 22 12:06 pandaJob.out
[2025-11-22 12:11:34] -rw-------. 1 boinc boinc    989768 Nov 22 12:06 agis_schedconf.cvmfs.json
[2025-11-22 12:11:34] -rw-------. 1 boinc boinc   1526164 Nov 22 12:06 agis_ddmendpoints.agis.ALL.json
[2025-11-22 12:11:34] drwx------. 5 boinc boinc      4096 Nov 22 12:06 pilot3
[2025-11-22 12:11:34] -rw-r--r--. 1 boinc boinc       524 Nov 22 12:08 boinc_task_state.xml
[2025-11-22 12:11:34] -rw-------. 1 boinc boinc      1014 Nov 22 12:08 memory_monitor_summary.json
[2025-11-22 12:11:34] -rw-------. 1 boinc boinc     47751 Nov 22 12:08 log.47556137._003163.job.log.tgz.1
[2025-11-22 12:11:34] -rw-------. 1 boinc boinc        95 Nov 22 12:10 pilot_heartbeat.json
[2025-11-22 12:11:34] -rw-------. 1 boinc boinc     10331 Nov 22 12:10 heartbeat.json
[2025-11-22 12:11:34] -rw-r--r--. 1 boinc boinc      8192 Nov 22 12:11 boinc_mmap_file
[2025-11-22 12:11:34] -rw-r--r--. 1 boinc boinc        23 Nov 22 12:11 wrapper_checkpoint.txt
[2025-11-22 12:11:34] -rw-------. 1 boinc boinc      4823 Nov 22 12:11 pilotlog.txt
[2025-11-22 12:11:34] -rw-------. 1 boinc boinc     99289 Nov 22 12:11 log.47556137._003163.job.log.1
[2025-11-22 12:11:34] -rw-------. 1 boinc boinc       186 Nov 22 12:11 output.list
[2025-11-22 12:11:34] -rw-r--r--. 1 boinc boinc       620 Nov 22 12:11 runtime_log
[2025-11-22 12:11:34] -rw-------. 1 boinc boinc    163840 Nov 22 12:11 result.tar.gz
[2025-11-22 12:11:34] -rw-r--r--. 1 boinc boinc      8636 Nov 22 12:11 runtime_log.err
[2025-11-22 12:11:34] -rw-------. 1 boinc boinc       645 Nov 22 12:11 6VLKDmQNyg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmM2HKDmfn18pn.diag
[2025-11-22 12:11:34] -rw-r--r--. 1 boinc boinc     22487 Nov 22 12:11 stderr.txt
[2025-11-22 12:11:34] No HITS result produced
[2025-11-22 12:11:34]  *** Contents of shared directory: ***
[2025-11-22 12:11:34] total 404176
[2025-11-22 12:11:34] -rw-r--r--. 2 boinc boinc 413097382 Nov 22 12:06 ATLAS.root_0
[2025-11-22 12:11:34] -rw-r--r--. 2 boinc boinc     15847 Nov 22 12:06 start_atlas.sh
[2025-11-22 12:11:34] -rw-r--r--. 2 boinc boinc    590100 Nov 22 12:06 input.tar.gz
[2025-11-22 12:11:34] -rw-------. 1 boinc boinc    163840 Nov 22 12:11 result.tar.gz
12:11:35 (1690960): run_atlas exited; CPU time 45.217807
12:11:35 (1690960): called boinc_finish(0)

</stderr_txt>
]]>

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