Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:44:35 (715): wrapper (7.7.26015): starting
14:44:35 (715): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 14:44:35] Arguments: --nthreads 8
[2025-11-22 14:44:35] Threads: 8
[2025-11-22 14:44:35] Checking for CVMFS
[2025-11-22 14:44:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 14:44:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 14:44:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 14:44:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 14:44:36] 2.11.2.0 3838 137141 128988 153183 2 90 12506491 18432001 1885 130560 0 112868935 99.988 4876270 26937 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 14:44:36] CVMFS is ok
[2025-11-22 14:44:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 14:44:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 14:44:36] Further information can be found at the LHC@home message board.
[2025-11-22 14:44:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 14:44:36] Checking for apptainer binary...
[2025-11-22 14:44:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 14:44:36] Running /usr/bin/apptainer --version
[2025-11-22 14:44:36] apptainer version 1.3.2-1.el7
[2025-11-22 14:44:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 14:44:36] c-206-4.aglt2.org
[2025-11-22 14:44:36] apptainer works
[2025-11-22 14:44:36] Set ATHENA_PROC_NUMBER=8
[2025-11-22 14:44:36] Set ATHENA_CORE_NUMBER=8
[2025-11-22 14:44:36] Starting ATLAS job with PandaID=6894278654
[2025-11-22 14:44:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 09:25:05]  *** The last 200 lines of the pilot log: ***
[2025-11-23 09:25:05] 2025-11-23 14:24:33,046 | INFO     | extracted standard info from prmon json
[2025-11-23 09:25:05] 2025-11-23 14:24:33,046 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 09:25:05] 2025-11-23 14:24:33,046 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 09:25:05] 2025-11-23 14:24:33,061 | INFO     | fitting pss+swap vs Time
[2025-11-23 09:25:05] 2025-11-23 14:24:33,061 | INFO     | monitor loop #4801: job 0:6894278654 is in state 'finished'
[2025-11-23 09:25:05] 2025-11-23 14:24:33,062 | INFO     | sum of square deviations: 413845889628.9662
[2025-11-23 09:25:05] 2025-11-23 14:24:33,062 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 09:25:05] 2025-11-23 14:24:33,085 | INFO     | sum of deviations: 2233290364726.0195
[2025-11-23 09:25:05] 2025-11-23 14:24:33,087 | INFO     | mean x: 1763874264.5867393
[2025-11-23 09:25:05] 2025-11-23 14:24:33,087 | INFO     | mean y: 3188815.905540418
[2025-11-23 09:25:05] 2025-11-23 14:24:33,087 | INFO     | intersect: -9515435141.484709
[2025-11-23 09:25:05] 2025-11-23 14:24:33,088 | INFO     | chi2: 5.049452973090383
[2025-11-23 09:25:05] 2025-11-23 14:24:33,090 | INFO     | sum of square deviations: 408233404677.23694
[2025-11-23 09:25:05] 2025-11-23 14:24:33,111 | INFO     | sum of deviations: 2564423534612.691
[2025-11-23 09:25:05] 2025-11-23 14:24:33,111 | INFO     | mean x: 1763874112.089416
[2025-11-23 09:25:05] 2025-11-23 14:24:33,111 | INFO     | mean y: 3197808.533759124
[2025-11-23 09:25:05] 2025-11-23 14:24:33,111 | INFO     | intersect: -11077032847.045372
[2025-11-23 09:25:05] 2025-11-23 14:24:33,112 | INFO     | chi2: 2.8874669144870215
[2025-11-23 09:25:05] 2025-11-23 14:24:33,112 | INFO     | current chi2=2.8874669144870215 (change=42.81624306880465 %)
[2025-11-23 09:25:05] 2025-11-23 14:24:33,113 | INFO     | sum of square deviations: 402671897425.5022
[2025-11-23 09:25:05] 2025-11-23 14:24:33,134 | INFO     | sum of deviations: 2645062803629.324
[2025-11-23 09:25:05] 2025-11-23 14:24:33,134 | INFO     | mean x: 1763873959.5921173
[2025-11-23 09:25:05] 2025-11-23 14:24:33,134 | INFO     | mean y: 3200016.6883593034
[2025-11-23 09:25:05] 2025-11-23 14:24:33,135 | INFO     | intersect: -11583298645.465364
[2025-11-23 09:25:05] 2025-11-23 14:24:33,136 | INFO     | chi2: 2.6533252252566806
[2025-11-23 09:25:05] 2025-11-23 14:24:33,136 | INFO     | current chi2=2.6533252252566806 (change=8.108896003469459 %)
[2025-11-23 09:25:05] 2025-11-23 14:24:33,136 | INFO     | right removable region: 1090
[2025-11-23 09:25:05] 2025-11-23 14:24:33,137 | INFO     | sum of square deviations: 408233010617.237
[2025-11-23 09:25:05] 2025-11-23 14:24:33,158 | INFO     | sum of deviations: 1889363473749.0115
[2025-11-23 09:25:05] 2025-11-23 14:24:33,158 | INFO     | mean x: 1763874417.089416
[2025-11-23 09:25:05] 2025-11-23 14:24:33,158 | INFO     | mean y: 3198150.673357664
[2025-11-23 09:25:05] 2025-11-23 14:24:33,158 | INFO     | intersect: -8160276652.332584
[2025-11-23 09:25:05] 2025-11-23 14:24:33,159 | INFO     | chi2: 2.715203992941553
[2025-11-23 09:25:05] 2025-11-23 14:24:33,160 | INFO     | current chi2=2.715203992941553 (change=46.22775957293876 %)
[2025-11-23 09:25:05] 2025-11-23 14:24:33,161 | INFO     | sum of square deviations: 402671309752.0365
[2025-11-23 09:25:05] 2025-11-23 14:24:33,182 | INFO     | sum of deviations: 1796483172737.2651
[2025-11-23 09:25:05] 2025-11-23 14:24:33,182 | INFO     | mean x: 1763874569.5893676
[2025-11-23 09:25:05] 2025-11-23 14:24:33,182 | INFO     | mean y: 3200697.022914757
[2025-11-23 09:25:05] 2025-11-23 14:24:33,182 | INFO     | intersect: -7866172924.449652
[2025-11-23 09:25:05] 2025-11-23 14:24:33,183 | INFO     | chi2: 2.6324198736748894
[2025-11-23 09:25:05] 2025-11-23 14:24:33,183 | INFO     | current chi2=2.6324198736748894 (change=3.0489097497598374 %)
[2025-11-23 09:25:05] 2025-11-23 14:24:33,183 | INFO     | left removable region: 20
[2025-11-23 09:25:05] 2025-11-23 14:24:33,184 | INFO     | sum of square deviations: 379864080471.8402
[2025-11-23 09:25:05] 2025-11-23 14:24:33,205 | INFO     | sum of deviations: 2074683442468.6206
[2025-11-23 09:25:05] 2025-11-23 14:24:33,205 | INFO     | mean x: 1763874539.0925233
[2025-11-23 09:25:05] 2025-11-23 14:24:33,205 | INFO     | mean y: 3215669.114953271
[2025-11-23 09:25:05] 2025-11-23 14:24:33,206 | INFO     | intersect: -9630444076.501635
[2025-11-23 09:25:05] 2025-11-23 14:24:33,206 | INFO     | chi2: 0.1766633547365421
[2025-11-23 09:25:05] 2025-11-23 14:24:33,207 | INFO     | current memory leak: 5.46 B/s (using 1070 data points, chi2=0.18)
[2025-11-23 09:25:05] 2025-11-23 14:24:33,208 | INFO     | could have reported an average CPU frequency of 2623 MHz (40 samples)
[2025-11-23 09:25:05] 2025-11-23 14:24:33,208 | INFO     | ..............................
[2025-11-23 09:25:05] 2025-11-23 14:24:33,208 | INFO     | . Timing measurements:
[2025-11-23 09:25:05] 2025-11-23 14:24:33,208 | INFO     | . get job = 0 s
[2025-11-23 09:25:05] 2025-11-23 14:24:33,209 | INFO     | . initial setup = 2 s
[2025-11-23 09:25:05] 2025-11-23 14:24:33,209 | INFO     | . payload setup = 5 s
[2025-11-23 09:25:05] 2025-11-23 14:24:33,209 | INFO     | . stage-in = 0 s
[2025-11-23 09:25:05] 2025-11-23 14:24:33,209 | INFO     | . payload execution = 67149 s
[2025-11-23 09:25:05] 2025-11-23 14:24:33,209 | INFO     | . stage-out = 3 s
[2025-11-23 09:25:05] 2025-11-23 14:24:33,209 | INFO     | . log creation = 0 s
[2025-11-23 09:25:05] 2025-11-23 14:24:33,209 | INFO     | ..............................
[2025-11-23 09:25:05] 2025-11-23 14:24:33,339 | INFO     | PID=4570 has CPU usage=13.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 09:25:05] 2025-11-23 14:24:33,339 | INFO     | .. there are 3 such processes running
[2025-11-23 09:25:05] 2025-11-23 14:24:33,383 | INFO     | 
[2025-11-23 09:25:05] 2025-11-23 14:24:33,383 | INFO     | job summary report
[2025-11-23 09:25:05] 2025-11-23 14:24:33,383 | INFO     | --------------------------------------------------
[2025-11-23 09:25:05] 2025-11-23 14:24:33,383 | INFO     | PanDA job id: 6894278654
[2025-11-23 09:25:05] 2025-11-23 14:24:33,383 | INFO     | task id: 47533967
[2025-11-23 09:25:05] 2025-11-23 14:24:33,384 | INFO     | errors: (none)
[2025-11-23 09:25:05] 2025-11-23 14:24:33,384 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 09:25:05] 2025-11-23 14:24:33,384 | INFO     | pilot state: finished 
[2025-11-23 09:25:05] 2025-11-23 14:24:33,384 | INFO     | transexitcode: 0
[2025-11-23 09:25:05] 2025-11-23 14:24:33,384 | INFO     | exeerrorcode: 0
[2025-11-23 09:25:05] 2025-11-23 14:24:33,384 | INFO     | exeerrordiag: 
[2025-11-23 09:25:05] 2025-11-23 14:24:33,384 | INFO     | exitcode: 0
[2025-11-23 09:25:05] 2025-11-23 14:24:33,384 | INFO     | exitmsg: OK
[2025-11-23 09:25:05] 2025-11-23 14:24:33,384 | INFO     | cpuconsumptiontime: 516843 s
[2025-11-23 09:25:05] 2025-11-23 14:24:33,384 | INFO     | nevents: 1000
[2025-11-23 09:25:05] 2025-11-23 14:24:33,385 | INFO     | neventsw: 0
[2025-11-23 09:25:05] 2025-11-23 14:24:33,385 | INFO     | pid: 11196
[2025-11-23 09:25:05] 2025-11-23 14:24:33,385 | INFO     | pgrp: 11196
[2025-11-23 09:25:05] 2025-11-23 14:24:33,385 | INFO     | corecount: 8
[2025-11-23 09:25:05] 2025-11-23 14:24:33,385 | INFO     | event service: False
[2025-11-23 09:25:05] 2025-11-23 14:24:33,385 | INFO     | sizes: {0: 2298529, 1: 2298784, 2: 2298784, 4: 2299074, 12: 2299102, 67158: 2354675, 67163: 2363669, 67166: 2363725, 67169: 2363971}
[2025-11-23 09:25:05] 2025-11-23 14:24:33,385 | INFO     | --------------------------------------------------
[2025-11-23 09:25:05] 2025-11-23 14:24:33,385 | INFO     | 
[2025-11-23 09:25:05] 2025-11-23 14:24:33,385 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-23 09:25:05] 2025-11-23 14:24:33,399 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 09:25:05] 2025-11-23 14:24:33,400 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 09:25:05] 2025-11-23 14:24:33,400 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 09:25:05] 2025-11-23 14:24:33,400 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 09:25:05] 2025-11-23 14:24:33,400 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 09:25:05] 2025-11-23 14:24:33,400 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 09:25:05] 2025-11-23 14:24:33,400 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 09:25:05] 2025-11-23 14:24:33,400 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 09:25:05] 2025-11-23 14:24:33,400 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 09:25:05] 2025-11-23 14:24:33,400 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 09:25:05] 2025-11-23 14:24:33,400 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 09:25:05] 2025-11-23 14:24:33,401 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 09:25:05] 2025-11-23 14:24:33,401 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 09:25:05] 2025-11-23 14:24:33,401 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 09:25:05] 2025-11-23 14:24:33,401 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 09:25:05] 2025-11-23 14:24:33,401 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 09:25:05] 2025-11-23 14:24:33,401 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 09:25:05] 2025-11-23 14:24:33,401 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 09:25:05] 2025-11-23 14:24:33,401 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 09:25:05] 2025-11-23 14:24:33,401 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 09:25:05] 2025-11-23 14:24:33,402 | INFO     | job 6894278654 has completed (purged errors)
[2025-11-23 09:25:05] 2025-11-23 14:24:33,402 | INFO     | overall cleanup function is called
[2025-11-23 09:25:05] 2025-11-23 14:24:34,414 | INFO     | --- collectZombieJob: --- 10, [11196]
[2025-11-23 09:25:05] 2025-11-23 14:24:34,414 | INFO     | zombie collector waiting for pid 11196
[2025-11-23 09:25:05] 2025-11-23 14:24:34,415 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 09:25:05] 2025-11-23 14:24:34,415 | INFO     | collected zombie processes
[2025-11-23 09:25:05] 2025-11-23 14:24:34,415 | INFO     | will attempt to kill all subprocesses of pid=11196
[2025-11-23 09:25:05] 2025-11-23 14:24:34,531 | INFO     | process IDs to be killed: [11196] (in reverse order)
[2025-11-23 09:25:05] 2025-11-23 14:24:34,571 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 09:25:05] 2025-11-23 14:24:34,572 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 09:25:05] 2025-11-23 14:24:34,574 | INFO     | did not find any defunct processes belonging to 11196
[2025-11-23 09:25:05] 2025-11-23 14:24:34,577 | INFO     | did not find any defunct processes belonging to 11196
[2025-11-23 09:25:05] 2025-11-23 14:24:34,578 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 09:25:05] 2025-11-23 14:24:34,578 | INFO     | ready for new job
[2025-11-23 09:25:05] 2025-11-23 14:24:34,578 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 09:25:05] 2025-11-23 14:24:34,582 | INFO     | ***************************************
[2025-11-23 09:25:05] 2025-11-23 14:24:34,582 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 09:25:05] 2025-11-23 14:24:34,582 | INFO     | ***************************************
[2025-11-23 09:25:05] 2025-11-23 14:24:34,582 | INFO     | 
[2025-11-23 09:25:05] 2025-11-23 14:24:34,583 | INFO     | architecture information:
[2025-11-23 09:25:05] 2025-11-23 14:24:34,583 | INFO     | executing command: cat /etc/os-release
[2025-11-23 09:25:05] 2025-11-23 14:24:34,594 | INFO     | cat /etc/os-release:
[2025-11-23 09:25:05] NAME="CentOS Linux"
[2025-11-23 09:25:05] VERSION="7 (Core)"
[2025-11-23 09:25:05] ID="centos"
[2025-11-23 09:25:05] ID_LIKE="rhel fedora"
[2025-11-23 09:25:05] VERSION_ID="7"
[2025-11-23 09:25:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 09:25:05] ANSI_COLOR="0;31"
[2025-11-23 09:25:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 09:25:05] HOME_URL="https://www.centos.org/"
[2025-11-23 09:25:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 09:25:05] 
[2025-11-23 09:25:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 09:25:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 09:25:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 09:25:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 09:25:05] 
[2025-11-23 09:25:05] 2025-11-23 14:24:34,594 | INFO     | ***************************************
[2025-11-23 09:25:05] 2025-11-23 14:24:35,097 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-23 09:25:05] 2025-11-23 14:24:35,112 | INFO     | sufficient remaining disk space (25782386688 B)
[2025-11-23 09:25:05] 2025-11-23 14:24:35,112 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 09:25:05] 2025-11-23 14:24:35,113 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 09:25:05] 2025-11-23 14:24:35,113 | INFO     | update_server=False
[2025-11-23 09:25:05] 2025-11-23 14:24:35,113 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 09:25:05] 2025-11-23 14:24:35,113 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 09:25:05] 2025-11-23 14:24:35,114 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 09:25:05] 2025-11-23 14:24:35,418 | INFO     | all job control threads have been joined
[2025-11-23 09:25:05] 2025-11-23 14:24:35,581 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 09:25:05] 2025-11-23 14:24:35,581 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 09:25:05] 2025-11-23 14:24:35,581 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 09:25:05] 2025-11-23 14:24:35,581 | INFO     | will abort loop
[2025-11-23 09:25:05] 2025-11-23 14:24:35,705 | INFO     | all payload control threads have been joined
[2025-11-23 09:25:05] 2025-11-23 14:24:35,845 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 09:25:05] 2025-11-23 14:24:35,988 | INFO     | all data control threads have been joined
[2025-11-23 09:25:05] 2025-11-23 14:24:36,119 | INFO     | [job] retrieve thread has finished
[2025-11-23 09:25:05] 2025-11-23 14:24:36,120 | INFO     | [job] queue monitor thread has finished
[2025-11-23 09:25:05] 2025-11-23 14:24:36,134 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 09:25:05] 2025-11-23 14:24:36,343 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 09:25:05] 2025-11-23 14:24:36,421 | INFO     | [job] control thread has finished
[2025-11-23 09:25:05] 2025-11-23 14:24:36,570 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 09:25:05] 2025-11-23 14:24:36,587 | INFO     | [job] job monitor thread has finished
[2025-11-23 09:25:05] 2025-11-23 14:24:36,679 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 09:25:05] 2025-11-23 14:24:36,711 | INFO     | [payload] control thread has finished
[2025-11-23 09:25:05] 2025-11-23 14:24:36,947 | INFO     | [job] validate thread has finished
[2025-11-23 09:25:05] 2025-11-23 14:24:36,963 | INFO     | [data] copytool_in thread has finished
[2025-11-23 09:25:05] 2025-11-23 14:24:36,994 | INFO     | [data] control thread has finished
[2025-11-23 09:25:05] 2025-11-23 14:24:37,092 | INFO     | [payload] failed_post thread has finished
[2025-11-23 09:25:05] 2025-11-23 14:24:37,119 | INFO     | [data] copytool_out thread has finished
[2025-11-23 09:25:05] 2025-11-23 14:24:37,665 | INFO     | [payload] validate_post thread has finished
[2025-11-23 09:25:05] 2025-11-23 14:24:38,855 | INFO     | [monitor] cgroup control has ended
[2025-11-23 09:25:05] 2025-11-23 14:24:39,851 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 09:25:05] 2025-11-23 14:24:41,435 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139919228970816)>', '<ExcThread(monitor, started 139918776964864)>']
[2025-11-23 09:25:05] 2025-11-23 14:24:46,460 | INFO     | all workflow threads have been joined
[2025-11-23 09:25:05] 2025-11-23 14:24:46,461 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 09:25:05] 2025-11-23 14:24:46,462 | INFO     | traces error code: 0
[2025-11-23 09:25:05] 2025-11-23 14:24:46,462 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 09:25:05] 2025-11-23 14:25:05,638 | INFO     | PID=4570 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 09:25:05] 2025-11-23 14:25:05,639 | INFO     | .. there are 3 such processes running
[2025-11-23 09:25:05] 2025-11-23 14:25:05,640 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 09:25:05] 2025-11-23 14:25:05,640 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 09:25:05] 2025-11-23 14:25:05,640 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 09:25:05] 2025-11-23 14:25:05,641 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 09:25:05] 2025-11-23 14:25:05,641 | INFO     | [monitor] control thread has ended
[2025-11-23 09:25:05] 2025-11-23 14:25:05,740 [wrapper] ==== pilot stdout END ====
[2025-11-23 09:25:05] 2025-11-23 14:25:05,742 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 09:25:05] 2025-11-23 14:25:05,744 [wrapper] pilotpid: 4570
[2025-11-23 09:25:05] 2025-11-23 14:25:05,747 [wrapper] Pilot exit status: 0
[2025-11-23 09:25:05] 2025-11-23 14:25:05,756 [wrapper] pandaids: 6894278654
[2025-11-23 09:25:05] 2025-11-23 14:25:05,797 [wrapper] cleanup supervisor_pilot 26533 4571
[2025-11-23 09:25:05] 2025-11-23 14:25:05,799 [wrapper] Test setup, not cleaning
[2025-11-23 09:25:05] 2025-11-23 14:25:05,801 [wrapper] apfmon messages muted
[2025-11-23 09:25:05] 2025-11-23 14:25:05,804 [wrapper] ==== wrapper stdout END ====
[2025-11-23 09:25:05] 2025-11-23 14:25:05,807 [wrapper] ==== wrapper stderr END ====
[2025-11-23 09:25:05]  *** Error codes and diagnostics ***
[2025-11-23 09:25:05]     "exeErrorCode": 0,
[2025-11-23 09:25:05]     "exeErrorDiag": "",
[2025-11-23 09:25:05]     "pilotErrorCode": 0,
[2025-11-23 09:25:05]     "pilotErrorDiag": "",
[2025-11-23 09:25:05]  *** Listing of results directory ***
[2025-11-23 09:25:05] total 1303976
[2025-11-23 09:25:05] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 03:27 pilot3.tar.gz
[2025-11-23 09:25:05] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 03:40 queuedata.json
[2025-11-23 09:25:05] -rwx------ 1 boincer umatlas     36292 Nov 21 03:40 runpilot2-wrapper.sh
[2025-11-23 09:25:05] -rw-r--r-- 1 boincer umatlas       100 Nov 22 14:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 09:25:05] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 14:44 run_atlas
[2025-11-23 09:25:05] -rw-r--r-- 1 boincer umatlas       105 Nov 22 14:44 job.xml
[2025-11-23 09:25:05] -rw-r--r-- 2 boincer umatlas 410792864 Nov 22 14:44 EVNT.47493127._002326.pool.root.1
[2025-11-23 09:25:05] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 14:44 start_atlas.sh
[2025-11-23 09:25:05] drwxrwx--x 2 boincer umatlas      4096 Nov 22 14:44 shared
[2025-11-23 09:25:05] -rw-r--r-- 2 boincer umatlas    590103 Nov 22 14:44 input.tar.gz
[2025-11-23 09:25:05] -rw-r--r-- 1 boincer umatlas         0 Nov 22 14:44 boinc_lockfile
[2025-11-23 09:25:05] -rw-r--r-- 1 boincer umatlas      2785 Nov 22 14:44 pandaJob.out
[2025-11-23 09:25:05] -rw------- 1 boincer umatlas        57 Nov 22 14:44 setup.sh.local
[2025-11-23 09:25:05] -rw------- 1 boincer umatlas    989768 Nov 22 14:44 agis_schedconf.cvmfs.json
[2025-11-23 09:25:05] drwx------ 5 boincer umatlas      4096 Nov 22 14:44 pilot3
[2025-11-23 09:25:05] -rw-r--r-- 1 boincer umatlas       533 Nov 23 09:13 boinc_task_state.xml
[2025-11-23 09:25:05] -rw-r--r-- 1 boincer umatlas      5953 Nov 23 09:21 init_data.xml
[2025-11-23 09:25:05] -rw------- 1 boincer umatlas 897382709 Nov 23 09:23 HITS.47533967._002974.pool.root.1
[2025-11-23 09:25:05] -rw------- 1 boincer umatlas      1076 Nov 23 09:24 memory_monitor_summary.json
[2025-11-23 09:25:05] -rw------- 1 boincer umatlas   1526164 Nov 23 09:24 agis_ddmendpoints.agis.ALL.json
[2025-11-23 09:25:05] -rw------- 1 boincer umatlas   2282069 Nov 23 09:24 log.47533967._002974.job.log.tgz.1
[2025-11-23 09:25:05] -rw------- 1 boincer umatlas      8674 Nov 23 09:24 heartbeat.json
[2025-11-23 09:25:05] -rw-r--r-- 1 boincer umatlas        29 Nov 23 09:24 wrapper_checkpoint.txt
[2025-11-23 09:25:05] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 09:24 boinc_mmap_file
[2025-11-23 09:25:05] -rw------- 1 boincer umatlas        95 Nov 23 09:25 pilot_heartbeat.json
[2025-11-23 09:25:05] -rw------- 1 boincer umatlas       819 Nov 23 09:25 pilotlog.txt
[2025-11-23 09:25:05] -rw------- 1 boincer umatlas   9302871 Nov 23 09:25 log.47533967._002974.job.log.1
[2025-11-23 09:25:05] -rw------- 1 boincer umatlas       353 Nov 23 09:25 output.list
[2025-11-23 09:25:05] -rw-r--r-- 1 boincer umatlas       620 Nov 23 09:25 runtime_log
[2025-11-23 09:25:05] -rw------- 1 boincer umatlas  11601920 Nov 23 09:25 result.tar.gz
[2025-11-23 09:25:05] -rw-r--r-- 1 boincer umatlas      9338 Nov 23 09:25 runtime_log.err
[2025-11-23 09:25:05] -rw------- 1 boincer umatlas       667 Nov 23 09:25 llxMDmKsbg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmOTHKDmO2QL7n.diag
[2025-11-23 09:25:05] -rw-r--r-- 1 boincer umatlas     21347 Nov 23 09:25 stderr.txt
[2025-11-23 09:25:05] HITS file was successfully produced:
[2025-11-23 09:25:05] -rw------- 1 boincer umatlas 897382709 Nov 23 09:23 shared/HITS.pool.root.1
[2025-11-23 09:25:05]  *** Contents of shared directory: ***
[2025-11-23 09:25:05] total 1289456
[2025-11-23 09:25:05] -rw-r--r-- 2 boincer umatlas 410792864 Nov 22 14:44 ATLAS.root_0
[2025-11-23 09:25:05] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 14:44 start_atlas.sh
[2025-11-23 09:25:05] -rw-r--r-- 2 boincer umatlas    590103 Nov 22 14:44 input.tar.gz
[2025-11-23 09:25:05] -rw------- 1 boincer umatlas 897382709 Nov 23 09:23 HITS.pool.root.1
[2025-11-23 09:25:05] -rw------- 1 boincer umatlas  11601920 Nov 23 09:25 result.tar.gz
09:25:07 (715): run_atlas exited; CPU time 515943.753592
09:25:07 (715): called boinc_finish(0)

</stderr_txt>
]]>

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