Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
22:12:38 (2817426): wrapper (7.7.26015): starting
22:12:38 (2817426): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 22:12:38] Arguments: --nthreads 8
[2025-11-22 22:12:38] Threads: 8
[2025-11-22 22:12:38] Checking for CVMFS
[2025-11-22 22:12:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 22:12:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 22:12:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 22:12:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 22:12:41] 2.11.5.0 6031 1941 161088 153184 2 81 2627159 4194304 19671 130560 0 15347705 99.965 369016 435 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-11-22 22:12:41] CVMFS is ok
[2025-11-22 22:12:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 22:12:41] Checking for apptainer binary...
[2025-11-22 22:12:41] apptainer is not installed, using version from CVMFS
[2025-11-22 22:12:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 22:12:44] mikemint-desktop
[2025-11-22 22:12:44] apptainer works
[2025-11-22 22:12:44] Set ATHENA_PROC_NUMBER=8
[2025-11-22 22:12:44] Set ATHENA_CORE_NUMBER=8
[2025-11-22 22:12:45] Starting ATLAS job with PandaID=6894267759
[2025-11-22 22:12:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 13:42:12]  *** The last 200 lines of the pilot log: ***
[2025-11-23 13:42:12] 2025-11-23 12:41:24,859 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 13:42:12] 2025-11-23 12:41:26,835 | INFO     | time since job start (55569s) is within the limit (172800.0s)
[2025-11-23 13:42:12] 2025-11-23 12:41:27,369 | INFO     | monitor loop #3414: job 0:6894267759 is in state 'finished'
[2025-11-23 13:42:12] 2025-11-23 12:41:27,370 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 13:42:12] 2025-11-23 12:41:29,460 | INFO     | PID=2822523 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 13:42:12] 2025-11-23 12:41:29,460 | INFO     | .. there are 25 such processes running
[2025-11-23 13:42:12] 2025-11-23 12:41:29,895 | INFO     | monitor loop #3415: job 0:6894267759 is in state 'finished'
[2025-11-23 13:42:12] 2025-11-23 12:41:29,895 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 13:42:12] 2025-11-23 12:41:30,461 | INFO     | time since job start (55573s) is within the limit (172800.0s)
[2025-11-23 13:42:12] 2025-11-23 12:41:32,407 | INFO     | monitor loop #3416: job 0:6894267759 is in state 'finished'
[2025-11-23 13:42:12] 2025-11-23 12:41:32,407 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 13:42:12] 2025-11-23 12:41:32,467 | INFO     | time since job start (55575s) is within the limit (172800.0s)
[2025-11-23 13:42:12] 2025-11-23 12:41:34,475 | INFO     | time since job start (55577s) is within the limit (172800.0s)
[2025-11-23 13:42:12] 2025-11-23 12:41:34,915 | INFO     | monitor loop #3417: job 0:6894267759 is in state 'finished'
[2025-11-23 13:42:12] 2025-11-23 12:41:34,915 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 13:42:12] 2025-11-23 12:41:35,126 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 13:42:12] 2025-11-23 12:41:35,164 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2350.830765625
[2025-11-23 13:42:12] 2025-11-23 12:41:35,196 | INFO     | using path: /var/lib/boinc-client/slots/13/PanDA_Pilot-6894267759/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 13:42:12] 2025-11-23 12:41:35,197 | INFO     | extracted standard info from prmon json
[2025-11-23 13:42:12] 2025-11-23 12:41:35,197 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 13:42:12] 2025-11-23 12:41:35,197 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 13:42:12] 2025-11-23 12:41:35,213 | INFO     | fitting pss+swap vs Time
[2025-11-23 13:42:12] 2025-11-23 12:41:35,215 | INFO     | sum of square deviations: 229837644412.40417
[2025-11-23 13:42:12] 2025-11-23 12:41:35,252 | INFO     | sum of deviations: 532744757002.6637
[2025-11-23 13:42:12] 2025-11-23 12:41:35,252 | INFO     | mean x: 1763874010.0419888
[2025-11-23 13:42:12] 2025-11-23 12:41:35,252 | INFO     | mean y: 2774789.7193370163
[2025-11-23 13:42:12] 2025-11-23 12:41:35,252 | INFO     | intersect: -4085740097.6722717
[2025-11-23 13:42:12] 2025-11-23 12:41:35,253 | INFO     | chi2: 29.131286819753974
[2025-11-23 13:42:12] 2025-11-23 12:41:35,255 | INFO     | sum of square deviations: 226049451686.94534
[2025-11-23 13:42:12] 2025-11-23 12:41:35,315 | INFO     | sum of deviations: 828500075244.897
[2025-11-23 13:42:12] 2025-11-23 12:41:35,315 | INFO     | mean x: 1763873857.547778
[2025-11-23 13:42:12] 2025-11-23 12:41:35,315 | INFO     | mean y: 2786693.223333333
[2025-11-23 13:42:12] 2025-11-23 12:41:35,315 | INFO     | intersect: -6462035994.003015
[2025-11-23 13:42:12] 2025-11-23 12:41:35,317 | INFO     | chi2: 25.61015232483713
[2025-11-23 13:42:12] 2025-11-23 12:41:35,317 | INFO     | current chi2=25.61015232483713 (change=12.087123087639082 %)
[2025-11-23 13:42:12] 2025-11-23 12:41:35,317 | INFO     | right removable region: 899
[2025-11-23 13:42:12] 2025-11-23 12:41:35,318 | INFO     | sum of square deviations: 226048876456.94522
[2025-11-23 13:42:12] 2025-11-23 12:41:35,367 | INFO     | sum of deviations: 162921773192.30936
[2025-11-23 13:42:12] 2025-11-23 12:41:35,371 | INFO     | mean x: 1763874162.547778
[2025-11-23 13:42:12] 2025-11-23 12:41:35,371 | INFO     | mean y: 2789674.1555555556
[2025-11-23 13:42:12] 2025-11-23 12:41:35,371 | INFO     | intersect: -1268499574.2345765
[2025-11-23 13:42:12] 2025-11-23 12:41:35,372 | INFO     | chi2: 24.546272578394852
[2025-11-23 13:42:12] 2025-11-23 12:41:35,373 | INFO     | current chi2=24.546272578394852 (change=15.73914077235344 %)
[2025-11-23 13:42:12] 2025-11-23 12:41:35,373 | INFO     | left removable region: 10
[2025-11-23 13:42:12] 2025-11-23 12:41:35,374 | INFO     | sum of square deviations: 217861301382.72015
[2025-11-23 13:42:12] 2025-11-23 12:41:35,430 | INFO     | sum of deviations: 206445831691.25943
[2025-11-23 13:42:12] 2025-11-23 12:41:35,430 | INFO     | mean x: 1763874132.0607424
[2025-11-23 13:42:12] 2025-11-23 12:41:35,430 | INFO     | mean y: 2817477.3655793024
[2025-11-23 13:42:12] 2025-11-23 12:41:35,430 | INFO     | intersect: -1668633394.7297838
[2025-11-23 13:42:12] 2025-11-23 12:41:35,431 | INFO     | chi2: 16.867118932056336
[2025-11-23 13:42:12] 2025-11-23 12:41:35,432 | INFO     | current memory leak: 0.95 B/s (using 889 data points, chi2=16.87)
[2025-11-23 13:42:12] 2025-11-23 12:41:35,433 | INFO     | could have reported an average CPU frequency of 2353 MHz (33 samples)
[2025-11-23 13:42:12] 2025-11-23 12:41:35,433 | INFO     | ..............................
[2025-11-23 13:42:12] 2025-11-23 12:41:35,433 | INFO     | . Timing measurements:
[2025-11-23 13:42:12] 2025-11-23 12:41:35,433 | INFO     | . get job = 0 s
[2025-11-23 13:42:12] 2025-11-23 12:41:35,433 | INFO     | . initial setup = 6 s
[2025-11-23 13:42:12] 2025-11-23 12:41:35,433 | INFO     | . payload setup = 113 s
[2025-11-23 13:42:12] 2025-11-23 12:41:35,433 | INFO     | . stage-in = 0 s
[2025-11-23 13:42:12] 2025-11-23 12:41:35,433 | INFO     | . payload execution = 55226 s
[2025-11-23 13:42:12] 2025-11-23 12:41:35,434 | INFO     | . stage-out = 5 s
[2025-11-23 13:42:12] 2025-11-23 12:41:35,434 | INFO     | . log creation = 1 s
[2025-11-23 13:42:12] 2025-11-23 12:41:35,434 | INFO     | ..............................
[2025-11-23 13:42:12] 2025-11-23 12:41:35,667 | INFO     | 
[2025-11-23 13:42:12] 2025-11-23 12:41:35,667 | INFO     | job summary report
[2025-11-23 13:42:12] 2025-11-23 12:41:35,668 | INFO     | --------------------------------------------------
[2025-11-23 13:42:12] 2025-11-23 12:41:35,668 | INFO     | PanDA job id: 6894267759
[2025-11-23 13:42:12] 2025-11-23 12:41:35,668 | INFO     | task id: 47533967
[2025-11-23 13:42:12] 2025-11-23 12:41:35,668 | INFO     | errors: (none)
[2025-11-23 13:42:12] 2025-11-23 12:41:35,668 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 13:42:12] 2025-11-23 12:41:35,668 | INFO     | pilot state: finished 
[2025-11-23 13:42:12] 2025-11-23 12:41:35,668 | INFO     | transexitcode: 0
[2025-11-23 13:42:12] 2025-11-23 12:41:35,668 | INFO     | exeerrorcode: 0
[2025-11-23 13:42:12] 2025-11-23 12:41:35,668 | INFO     | exeerrordiag: 
[2025-11-23 13:42:12] 2025-11-23 12:41:35,669 | INFO     | exitcode: 0
[2025-11-23 13:42:12] 2025-11-23 12:41:35,669 | INFO     | exitmsg: OK
[2025-11-23 13:42:12] 2025-11-23 12:41:35,669 | INFO     | cpuconsumptiontime: 274327 s
[2025-11-23 13:42:12] 2025-11-23 12:41:35,669 | INFO     | nevents: 1000
[2025-11-23 13:42:12] 2025-11-23 12:41:35,669 | INFO     | neventsw: 0
[2025-11-23 13:42:12] 2025-11-23 12:41:35,669 | INFO     | pid: 2843707
[2025-11-23 13:42:12] 2025-11-23 12:41:35,669 | INFO     | pgrp: 2843707
[2025-11-23 13:42:12] 2025-11-23 12:41:35,669 | INFO     | corecount: 8
[2025-11-23 13:42:12] 2025-11-23 12:41:35,669 | INFO     | event service: False
[2025-11-23 13:42:12] 2025-11-23 12:41:35,670 | INFO     | sizes: {0: 2297979, 1: 2298672, 2: 2298871, 13: 2298871, 24: 2298927, 34: 2298955, 45: 2299111, 56: 2299139, 61: 2299429, 67: 2299457, 55345: 2350524, 55352: 23595
[2025-11-23 13:42:12] 2025-11-23 12:41:35,670 | INFO     | --------------------------------------------------
[2025-11-23 13:42:12] 2025-11-23 12:41:35,670 | INFO     | 
[2025-11-23 13:42:12] 2025-11-23 12:41:35,670 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/13
[2025-11-23 13:42:12] 2025-11-23 12:41:36,292 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 13:42:12] 2025-11-23 12:41:36,292 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 13:42:12] 2025-11-23 12:41:36,293 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 13:42:12] 2025-11-23 12:41:36,293 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 13:42:12] 2025-11-23 12:41:36,293 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 13:42:12] 2025-11-23 12:41:36,293 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 13:42:12] 2025-11-23 12:41:36,293 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 13:42:12] 2025-11-23 12:41:36,293 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 13:42:12] 2025-11-23 12:41:36,293 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 13:42:12] 2025-11-23 12:41:36,293 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 13:42:12] 2025-11-23 12:41:36,293 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 13:42:12] 2025-11-23 12:41:36,294 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 13:42:12] 2025-11-23 12:41:36,294 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 13:42:12] 2025-11-23 12:41:36,294 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 13:42:12] 2025-11-23 12:41:36,294 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 13:42:12] 2025-11-23 12:41:36,294 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 13:42:12] 2025-11-23 12:41:36,294 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 13:42:12] 2025-11-23 12:41:36,294 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 13:42:12] 2025-11-23 12:41:36,294 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 13:42:12] 2025-11-23 12:41:36,294 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 13:42:12] 2025-11-23 12:41:36,295 | INFO     | job 6894267759 has completed (purged errors)
[2025-11-23 13:42:12] 2025-11-23 12:41:36,295 | INFO     | overall cleanup function is called
[2025-11-23 13:42:12] 2025-11-23 12:41:37,335 | INFO     | --- collectZombieJob: --- 10, [2843707]
[2025-11-23 13:42:12] 2025-11-23 12:41:37,335 | INFO     | zombie collector waiting for pid 2843707
[2025-11-23 13:42:12] 2025-11-23 12:41:37,335 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 13:42:12] 2025-11-23 12:41:37,335 | INFO     | collected zombie processes
[2025-11-23 13:42:12] 2025-11-23 12:41:37,335 | INFO     | will attempt to kill all subprocesses of pid=2843707
[2025-11-23 13:42:12] 2025-11-23 12:41:38,766 | INFO     | process IDs to be killed: [2843707] (in reverse order)
[2025-11-23 13:42:12] 2025-11-23 12:41:41,111 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 13:42:12] 2025-11-23 12:41:41,112 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 13:42:12] 2025-11-23 12:41:41,148 | INFO     | did not find any defunct processes belonging to 2843707
[2025-11-23 13:42:12] 2025-11-23 12:41:41,193 | INFO     | did not find any defunct processes belonging to 2843707
[2025-11-23 13:42:12] 2025-11-23 12:41:41,255 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 13:42:12] 2025-11-23 12:41:41,255 | INFO     | ready for new job
[2025-11-23 13:42:12] 2025-11-23 12:41:41,255 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 13:42:12] 2025-11-23 12:41:41,265 | INFO     | ***************************************
[2025-11-23 13:42:12] 2025-11-23 12:41:41,265 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 13:42:12] 2025-11-23 12:41:41,265 | INFO     | ***************************************
[2025-11-23 13:42:12] 2025-11-23 12:41:41,266 | INFO     | 
[2025-11-23 13:42:12] 2025-11-23 12:41:41,290 | INFO     | architecture information:
[2025-11-23 13:42:12] 2025-11-23 12:41:41,307 | INFO     | executing command: cat /etc/os-release
[2025-11-23 13:42:12] 2025-11-23 12:41:41,439 | INFO     | cat /etc/os-release:
[2025-11-23 13:42:12] NAME="CentOS Linux"
[2025-11-23 13:42:12] VERSION="7 (Core)"
[2025-11-23 13:42:12] ID="centos"
[2025-11-23 13:42:12] ID_LIKE="rhel fedora"
[2025-11-23 13:42:12] VERSION_ID="7"
[2025-11-23 13:42:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 13:42:12] ANSI_COLOR="0;31"
[2025-11-23 13:42:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 13:42:12] HOME_URL="https://www.centos.org/"
[2025-11-23 13:42:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 13:42:12] 
[2025-11-23 13:42:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 13:42:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 13:42:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 13:42:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 13:42:12] 
[2025-11-23 13:42:12] 2025-11-23 12:41:41,440 | INFO     | ***************************************
[2025-11-23 13:42:12] 2025-11-23 12:41:41,943 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/13
[2025-11-23 13:42:12] 2025-11-23 12:41:42,191 | INFO     | sufficient remaining disk space (92775907328 B)
[2025-11-23 13:42:12] 2025-11-23 12:41:42,192 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 13:42:12] 2025-11-23 12:41:42,192 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 13:42:12] 2025-11-23 12:41:42,192 | INFO     | update_server=False
[2025-11-23 13:42:12] 2025-11-23 12:41:42,192 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 13:42:12] 2025-11-23 12:41:42,195 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 13:42:12] 2025-11-23 12:41:42,463 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 13:42:12] 2025-11-23 12:41:42,463 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 13:42:12] 2025-11-23 12:41:42,463 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 13:42:12] 2025-11-23 12:41:42,464 | INFO     | will abort loop
[2025-11-23 13:42:12] 2025-11-23 12:41:42,783 | INFO     | all data control threads have been joined
[2025-11-23 13:42:12] 2025-11-23 12:41:43,203 | INFO     | [job] retrieve thread has finished
[2025-11-23 13:42:12] 2025-11-23 12:41:43,373 | INFO     | all payload control threads have been joined
[2025-11-23 13:42:12] 2025-11-23 12:41:43,395 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 13:42:12] 2025-11-23 12:41:43,467 | INFO     | [job] job monitor thread has finished
[2025-11-23 13:42:12] 2025-11-23 12:41:43,579 | INFO     | [data] copytool_in thread has finished
[2025-11-23 13:42:12] 2025-11-23 12:41:43,589 | INFO     | all job control threads have been joined
[2025-11-23 13:42:12] 2025-11-23 12:41:43,595 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 13:42:12] 2025-11-23 12:41:43,791 | INFO     | [data] control thread has finished
[2025-11-23 13:42:12] 2025-11-23 12:41:43,843 | INFO     | [job] validate thread has finished
[2025-11-23 13:42:12] 2025-11-23 12:41:44,051 | INFO     | [payload] validate_post thread has finished
[2025-11-23 13:42:12] 2025-11-23 12:41:44,059 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 13:42:12] 2025-11-23 12:41:44,203 | INFO     | [data] copytool_out thread has finished
[2025-11-23 13:42:12] 2025-11-23 12:41:44,375 | INFO     | [payload] control thread has finished
[2025-11-23 13:42:12] 2025-11-23 12:41:44,399 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 13:42:12] 2025-11-23 12:41:44,591 | INFO     | [job] control thread has finished
[2025-11-23 13:42:12] 2025-11-23 12:41:44,679 | INFO     | [payload] failed_post thread has finished
[2025-11-23 13:42:12] 2025-11-23 12:41:44,707 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 13:42:12] 2025-11-23 12:41:45,009 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 13:42:12] 2025-11-23 12:41:45,715 | INFO     | [job] queue monitor thread has finished
[2025-11-23 13:42:12] 2025-11-23 12:41:49,023 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 13:42:12] 2025-11-23 12:41:51,595 | INFO     | [monitor] cgroup control has ended
[2025-11-23 13:42:12] 2025-11-23 12:41:52,467 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139781677451072)>', '<ExcThread(monitor, started 139781077968640)>']
[2025-11-23 13:42:12] 2025-11-23 12:41:57,495 | INFO     | all workflow threads have been joined
[2025-11-23 13:42:12] 2025-11-23 12:41:57,495 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 13:42:12] 2025-11-23 12:41:57,496 | INFO     | traces error code: 0
[2025-11-23 13:42:12] 2025-11-23 12:41:57,496 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 13:42:12] 2025-11-23 12:42:08,978 | INFO     | PID=2822523 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 13:42:12] 2025-11-23 12:42:08,979 | INFO     | .. there are 25 such processes running
[2025-11-23 13:42:12] 2025-11-23 12:42:08,984 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 13:42:12] 2025-11-23 12:42:08,984 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 13:42:12] 2025-11-23 12:42:08,984 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 13:42:12] 2025-11-23 12:42:08,984 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 13:42:12] 2025-11-23 12:42:08,984 | INFO     | [monitor] control thread has ended
[2025-11-23 13:42:12] 2025-11-23 12:42:09,379 [wrapper] ==== pilot stdout END ====
[2025-11-23 13:42:12] 2025-11-23 12:42:09,447 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 13:42:12] 2025-11-23 12:42:09,519 [wrapper] pilotpid: 2822523
[2025-11-23 13:42:12] 2025-11-23 12:42:09,591 [wrapper] Pilot exit status: 0
[2025-11-23 13:42:12] 2025-11-23 12:42:09,820 [wrapper] pandaids: 6894267759
[2025-11-23 13:42:12] 2025-11-23 12:42:10,293 [wrapper] cleanup supervisor_pilot 1080574 2822524
[2025-11-23 13:42:12] 2025-11-23 12:42:10,375 [wrapper] Test setup, not cleaning
[2025-11-23 13:42:12] 2025-11-23 12:42:10,451 [wrapper] apfmon messages muted
[2025-11-23 13:42:12] 2025-11-23 12:42:10,535 [wrapper] ==== wrapper stdout END ====
[2025-11-23 13:42:12] 2025-11-23 12:42:10,615 [wrapper] ==== wrapper stderr END ====
[2025-11-23 13:42:12]  *** Error codes and diagnostics ***
[2025-11-23 13:42:12]     "exeErrorCode": 0,
[2025-11-23 13:42:12]     "exeErrorDiag": "",
[2025-11-23 13:42:12]     "pilotErrorCode": 0,
[2025-11-23 13:42:12]     "pilotErrorDiag": "",
[2025-11-23 13:42:12]  *** Listing of results directory ***
[2025-11-23 13:42:12] insgesamt 1323832
[2025-11-23 13:42:12] -rw-r--r-- 1 boinc boinc    576529 Nov 21 06:09 pilot3.tar.gz
[2025-11-23 13:42:12] -rwx------ 1 boinc boinc     36292 Nov 21 06:32 runpilot2-wrapper.sh
[2025-11-23 13:42:12] -rw-r--r-- 1 boinc boinc      5112 Nov 21 06:32 queuedata.json
[2025-11-23 13:42:12] -rw-r--r-- 1 boinc boinc       100 Nov 22 22:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 13:42:12] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 22:12 run_atlas
[2025-11-23 13:42:12] -rw-r--r-- 1 boinc boinc       105 Nov 22 22:12 job.xml
[2025-11-23 13:42:12] -rw-r--r-- 2 boinc boinc     15847 Nov 22 22:12 start_atlas.sh
[2025-11-23 13:42:12] drwxrwx--x 2 boinc boinc      4096 Nov 22 22:12 shared
[2025-11-23 13:42:12] -rw-r--r-- 2 boinc boinc    590100 Nov 22 22:12 input.tar.gz
[2025-11-23 13:42:12] -rw-r--r-- 1 boinc boinc      6666 Nov 22 22:12 init_data.xml
[2025-11-23 13:42:12] -rw-r--r-- 2 boinc boinc 410429969 Nov 22 22:12 EVNT.47493127._002252.pool.root.1
[2025-11-23 13:42:12] -rw-r--r-- 1 boinc boinc         0 Nov 22 22:12 boinc_lockfile
[2025-11-23 13:42:12] -rw-r--r-- 1 boinc boinc      2786 Nov 22 22:12 pandaJob.out
[2025-11-23 13:42:12] -rw------- 1 boinc boinc        46 Nov 22 22:12 setup.sh.local
[2025-11-23 13:42:12] -rw------- 1 boinc boinc    989768 Nov 22 22:15 agis_schedconf.cvmfs.json
[2025-11-23 13:42:12] drwx------ 5 boinc boinc      4096 Nov 22 22:15 pilot3
[2025-11-23 13:42:12] -rw-r--r-- 1 boinc boinc       533 Nov 23 13:05 boinc_task_state.xml
[2025-11-23 13:42:12] -rw------- 1 boinc boinc 922711600 Nov 23 13:39 HITS.47533967._002238.pool.root.1
[2025-11-23 13:42:12] -rw------- 1 boinc boinc      1041 Nov 23 13:40 memory_monitor_summary.json
[2025-11-23 13:42:12] -rw------- 1 boinc boinc   1526164 Nov 23 13:40 agis_ddmendpoints.agis.ALL.json
[2025-11-23 13:42:12] -rw------- 1 boinc boinc   2065054 Nov 23 13:40 log.47533967._002238.job.log.tgz.1
[2025-11-23 13:42:12] -rw------- 1 boinc boinc      8573 Nov 23 13:41 heartbeat.json
[2025-11-23 13:42:12] -rw------- 1 boinc boinc       823 Nov 23 13:42 pilotlog.txt
[2025-11-23 13:42:12] -rw------- 1 boinc boinc        95 Nov 23 13:42 pilot_heartbeat.json
[2025-11-23 13:42:12] -rw-r--r-- 1 boinc boinc      8192 Nov 23 13:42 boinc_mmap_file
[2025-11-23 13:42:12] -rw-r--r-- 1 boinc boinc        29 Nov 23 13:42 wrapper_checkpoint.txt
[2025-11-23 13:42:12] -rw------- 1 boinc boinc   7200420 Nov 23 13:42 log.47533967._002238.job.log.1
[2025-11-23 13:42:12] -rw------- 1 boinc boinc       353 Nov 23 13:42 output.list
[2025-11-23 13:42:12] -rw-r--r-- 1 boinc boinc       620 Nov 23 13:42 runtime_log
[2025-11-23 13:42:12] -rw------- 1 boinc boinc   9287680 Nov 23 13:42 result.tar.gz
[2025-11-23 13:42:12] -rw-r--r-- 1 boinc boinc      9473 Nov 23 13:42 runtime_log.err
[2025-11-23 13:42:12] -rw------- 1 boinc boinc       673 Nov 23 13:42 depLDmbwYg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmV7IKDmXlpJpm.diag
[2025-11-23 13:42:12] -rw-r--r-- 1 boinc boinc     21615 Nov 23 13:42 stderr.txt
[2025-11-23 13:42:12] HITS file was successfully produced:
[2025-11-23 13:42:12] -rw------- 1 boinc boinc 922711600 Nov 23 13:39 shared/HITS.pool.root.1
[2025-11-23 13:42:12]  *** Contents of shared directory: ***
[2025-11-23 13:42:12] insgesamt 1311576
[2025-11-23 13:42:12] -rw-r--r-- 2 boinc boinc     15847 Nov 22 22:12 start_atlas.sh
[2025-11-23 13:42:12] -rw-r--r-- 2 boinc boinc    590100 Nov 22 22:12 input.tar.gz
[2025-11-23 13:42:12] -rw-r--r-- 2 boinc boinc 410429969 Nov 22 22:12 ATLAS.root_0
[2025-11-23 13:42:12] -rw------- 1 boinc boinc 922711600 Nov 23 13:39 HITS.pool.root.1
[2025-11-23 13:42:12] -rw------- 1 boinc boinc   9287680 Nov 23 13:42 result.tar.gz
13:42:13 (2817426): run_atlas exited; CPU time 277093.361330
13:42:13 (2817426): called boinc_finish(0)

</stderr_txt>
]]>

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