Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:29:03 (2028149): wrapper (7.7.26015): starting
14:29:03 (2028149): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 14:29:03] Arguments: --nthreads 8
[2025-11-22 14:29:03] Threads: 8
[2025-11-22 14:29:03] Checking for CVMFS
[2025-11-22 14:29:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 14:29:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 14:29:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 14:29:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 14:29:05] 2.13.3.0 14328 24689 242256 153183 3 196 25727260 40960000 27604 16776704 0 314403477 99.731 215749254 50567 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 14:29:05] CVMFS is ok
[2025-11-22 14:29:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 14:29:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 14:29:05] Further information can be found at the LHC@home message board.
[2025-11-22 14:29:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 14:29:05] Checking for apptainer binary...
[2025-11-22 14:29:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 14:29:05] Running /usr/bin/apptainer --version
[2025-11-22 14:29:05] apptainer version 1.4.4-1.el9
[2025-11-22 14:29:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 14:29:06] c8-16-2.aglt2.org
[2025-11-22 14:29:06] apptainer works
[2025-11-22 14:29:06] Set ATHENA_PROC_NUMBER=8
[2025-11-22 14:29:06] Set ATHENA_CORE_NUMBER=8
[2025-11-22 14:29:06] Starting ATLAS job with PandaID=6894265342
[2025-11-22 14:29:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 02:03:10]  *** The last 200 lines of the pilot log: ***
[2025-11-23 02:03:10] 2025-11-23 07:02:00,560 | INFO     | time since job start (41495s) is within the limit (172800.0s)
[2025-11-23 02:03:10] 2025-11-23 07:02:02,110 | INFO     | monitor loop #2482: job 0:6894265342 is in state 'finished'
[2025-11-23 02:03:10] 2025-11-23 07:02:02,110 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 02:03:10] 2025-11-23 07:02:02,567 | INFO     | time since job start (41497s) is within the limit (172800.0s)
[2025-11-23 02:03:10] 2025-11-23 07:02:04,574 | INFO     | time since job start (41499s) is within the limit (172800.0s)
[2025-11-23 02:03:10] 2025-11-23 07:02:04,629 | INFO     | monitor loop #2483: job 0:6894265342 is in state 'finished'
[2025-11-23 02:03:10] 2025-11-23 07:02:04,629 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 02:03:10] 2025-11-23 07:02:06,584 | INFO     | time since job start (41501s) is within the limit (172800.0s)
[2025-11-23 02:03:10] 2025-11-23 07:02:07,134 | INFO     | monitor loop #2484: job 0:6894265342 is in state 'finished'
[2025-11-23 02:03:10] 2025-11-23 07:02:07,134 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 02:03:10] 2025-11-23 07:02:08,596 | INFO     | time since job start (41503s) is within the limit (172800.0s)
[2025-11-23 02:03:10] 2025-11-23 07:02:09,646 | INFO     | monitor loop #2485: job 0:6894265342 is in state 'finished'
[2025-11-23 02:03:10] 2025-11-23 07:02:09,646 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 02:03:10] 2025-11-23 07:02:10,620 | INFO     | time since job start (41505s) is within the limit (172800.0s)
[2025-11-23 02:03:10] 2025-11-23 07:02:12,151 | INFO     | monitor loop #2486: job 0:6894265342 is in state 'finished'
[2025-11-23 02:03:10] 2025-11-23 07:02:12,151 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 02:03:10] 2025-11-23 07:02:12,638 | INFO     | time since job start (41507s) is within the limit (172800.0s)
[2025-11-23 02:03:10] 2025-11-23 07:02:12,839 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-23 02:03:10] 2025-11-23 07:02:12,847 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.0243906250007
[2025-11-23 02:03:10] 2025-11-23 07:02:12,874 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6894265342/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 02:03:10] 2025-11-23 07:02:12,874 | INFO     | extracted standard info from prmon json
[2025-11-23 02:03:10] 2025-11-23 07:02:12,874 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 02:03:10] 2025-11-23 07:02:12,874 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 02:03:10] 2025-11-23 07:02:12,888 | INFO     | fitting pss+swap vs Time
[2025-11-23 02:03:10] 2025-11-23 07:02:12,889 | INFO     | sum of square deviations: 96208118955.81555
[2025-11-23 02:03:10] 2025-11-23 07:02:12,899 | INFO     | sum of deviations: 5991125239585.196
[2025-11-23 02:03:10] 2025-11-23 07:02:12,899 | INFO     | mean x: 1763860595.8552437
[2025-11-23 02:03:10] 2025-11-23 07:02:12,899 | INFO     | mean y: 3581374.8183161006
[2025-11-23 02:03:10] 2025-11-23 07:02:12,899 | INFO     | intersect: -109836522034.6596
[2025-11-23 02:03:10] 2025-11-23 07:02:12,903 | INFO     | chi2: 41.88596316556716
[2025-11-23 02:03:10] 2025-11-23 07:02:12,904 | INFO     | sum of square deviations: 94092406528.47641
[2025-11-23 02:03:10] 2025-11-23 07:02:12,914 | INFO     | sum of deviations: 6289782777908.483
[2025-11-23 02:03:10] 2025-11-23 07:02:12,914 | INFO     | mean x: 1763860443.3690476
[2025-11-23 02:03:10] 2025-11-23 07:02:12,914 | INFO     | mean y: 3602895.3407738097
[2025-11-23 02:03:10] 2025-11-23 07:02:12,914 | INFO     | intersect: -117904945186.90054
[2025-11-23 02:03:10] 2025-11-23 07:02:12,914 | INFO     | chi2: 36.80014299946671
[2025-11-23 02:03:10] 2025-11-23 07:02:12,914 | INFO     | current chi2=36.80014299946671 (change=12.142063311274914 %)
[2025-11-23 02:03:10] 2025-11-23 07:02:12,914 | INFO     | right removable region: 671
[2025-11-23 02:03:10] 2025-11-23 07:02:12,915 | INFO     | sum of square deviations: 94091640368.47635
[2025-11-23 02:03:10] 2025-11-23 07:02:12,929 | INFO     | sum of deviations: 5635603411292.989
[2025-11-23 02:03:10] 2025-11-23 07:02:12,929 | INFO     | mean x: 1763860748.3690476
[2025-11-23 02:03:10] 2025-11-23 07:02:12,929 | INFO     | mean y: 3606990.7782738097
[2025-11-23 02:03:10] 2025-11-23 07:02:12,929 | INFO     | intersect: -105642544055.43903
[2025-11-23 02:03:10] 2025-11-23 07:02:12,930 | INFO     | chi2: 37.73784015161809
[2025-11-23 02:03:10] 2025-11-23 07:02:12,930 | INFO     | current chi2=37.73784015161809 (change=9.903372634771085 %)
[2025-11-23 02:03:10] 2025-11-23 07:02:12,930 | INFO     | left removable region: 10
[2025-11-23 02:03:10] 2025-11-23 07:02:12,930 | INFO     | sum of square deviations: 89546001947.41055
[2025-11-23 02:03:10] 2025-11-23 07:02:12,941 | INFO     | sum of deviations: 5668443701896.753
[2025-11-23 02:03:10] 2025-11-23 07:02:12,941 | INFO     | mean x: 1763860717.9001513
[2025-11-23 02:03:10] 2025-11-23 07:02:12,941 | INFO     | mean y: 3657268.511346445
[2025-11-23 02:03:10] 2025-11-23 07:02:12,941 | INFO     | intersect: -111652306816.58676
[2025-11-23 02:03:10] 2025-11-23 07:02:12,942 | INFO     | chi2: 28.493792886189432
[2025-11-23 02:03:10] 2025-11-23 07:02:12,942 | INFO     | current memory leak: 63.30 B/s (using 661 data points, chi2=28.49)
[2025-11-23 02:03:10] 2025-11-23 07:02:12,946 | INFO     | could have reported an average CPU frequency of 3785 MHz (26 samples)
[2025-11-23 02:03:10] 2025-11-23 07:02:12,947 | INFO     | ..............................
[2025-11-23 02:03:10] 2025-11-23 07:02:12,947 | INFO     | . Timing measurements:
[2025-11-23 02:03:10] 2025-11-23 07:02:12,947 | INFO     | . get job = 0 s
[2025-11-23 02:03:10] 2025-11-23 07:02:12,947 | INFO     | . initial setup = 4 s
[2025-11-23 02:03:10] 2025-11-23 07:02:12,947 | INFO     | . payload setup = 42 s
[2025-11-23 02:03:10] 2025-11-23 07:02:12,947 | INFO     | . stage-in = 0 s
[2025-11-23 02:03:10] 2025-11-23 07:02:12,947 | INFO     | . payload execution = 41319 s
[2025-11-23 02:03:10] 2025-11-23 07:02:12,947 | INFO     | . stage-out = 6 s
[2025-11-23 02:03:10] 2025-11-23 07:02:12,947 | INFO     | . log creation = 2 s
[2025-11-23 02:03:10] 2025-11-23 07:02:12,947 | INFO     | ..............................
[2025-11-23 02:03:10] 2025-11-23 07:02:13,084 | INFO     | 
[2025-11-23 02:03:10] 2025-11-23 07:02:13,085 | INFO     | job summary report
[2025-11-23 02:03:10] 2025-11-23 07:02:13,085 | INFO     | --------------------------------------------------
[2025-11-23 02:03:10] 2025-11-23 07:02:13,085 | INFO     | PanDA job id: 6894265342
[2025-11-23 02:03:10] 2025-11-23 07:02:13,085 | INFO     | task id: 47533967
[2025-11-23 02:03:10] 2025-11-23 07:02:13,085 | INFO     | errors: (none)
[2025-11-23 02:03:10] 2025-11-23 07:02:13,085 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 02:03:10] 2025-11-23 07:02:13,085 | INFO     | pilot state: finished 
[2025-11-23 02:03:10] 2025-11-23 07:02:13,085 | INFO     | transexitcode: 0
[2025-11-23 02:03:10] 2025-11-23 07:02:13,085 | INFO     | exeerrorcode: 0
[2025-11-23 02:03:10] 2025-11-23 07:02:13,085 | INFO     | exeerrordiag: 
[2025-11-23 02:03:10] 2025-11-23 07:02:13,085 | INFO     | exitcode: 0
[2025-11-23 02:03:10] 2025-11-23 07:02:13,085 | INFO     | exitmsg: OK
[2025-11-23 02:03:10] 2025-11-23 07:02:13,085 | INFO     | cpuconsumptiontime: 134778 s
[2025-11-23 02:03:10] 2025-11-23 07:02:13,085 | INFO     | nevents: 1000
[2025-11-23 02:03:10] 2025-11-23 07:02:13,085 | INFO     | neventsw: 0
[2025-11-23 02:03:10] 2025-11-23 07:02:13,085 | INFO     | pid: 2077678
[2025-11-23 02:03:10] 2025-11-23 07:02:13,085 | INFO     | pgrp: 2077678
[2025-11-23 02:03:10] 2025-11-23 07:02:13,085 | INFO     | corecount: 8
[2025-11-23 02:03:10] 2025-11-23 07:02:13,085 | INFO     | event service: False
[2025-11-23 02:03:10] 2025-11-23 07:02:13,085 | INFO     | sizes: {0: 2298807, 11: 2298807, 22: 2298835, 29: 2299125, 32: 2299153, 41366: 2343159, 41373: 2352153, 41374: 2352209, 41437: 2352455}
[2025-11-23 02:03:10] 2025-11-23 07:02:13,085 | INFO     | --------------------------------------------------
[2025-11-23 02:03:10] 2025-11-23 07:02:13,085 | INFO     | 
[2025-11-23 02:03:10] 2025-11-23 07:02:13,085 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-11-23 02:03:10] 2025-11-23 07:02:13,405 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 02:03:10] 2025-11-23 07:02:13,406 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 02:03:10] 2025-11-23 07:02:13,406 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 02:03:10] 2025-11-23 07:02:13,406 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 02:03:10] 2025-11-23 07:02:13,406 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 02:03:10] 2025-11-23 07:02:13,406 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 02:03:10] 2025-11-23 07:02:13,406 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 02:03:10] 2025-11-23 07:02:13,406 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 02:03:10] 2025-11-23 07:02:13,406 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 02:03:10] 2025-11-23 07:02:13,406 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 02:03:10] 2025-11-23 07:02:13,406 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 02:03:10] 2025-11-23 07:02:13,406 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 02:03:10] 2025-11-23 07:02:13,406 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 02:03:10] 2025-11-23 07:02:13,406 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 02:03:10] 2025-11-23 07:02:13,406 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 02:03:10] 2025-11-23 07:02:13,406 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 02:03:10] 2025-11-23 07:02:13,406 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 02:03:10] 2025-11-23 07:02:13,406 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 02:03:10] 2025-11-23 07:02:13,406 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 02:03:10] 2025-11-23 07:02:13,406 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 02:03:10] 2025-11-23 07:02:13,407 | INFO     | job 6894265342 has completed (purged errors)
[2025-11-23 02:03:10] 2025-11-23 07:02:13,407 | INFO     | overall cleanup function is called
[2025-11-23 02:03:10] 2025-11-23 07:02:14,475 | INFO     | --- collectZombieJob: --- 10, [2077678]
[2025-11-23 02:03:10] 2025-11-23 07:02:14,475 | INFO     | zombie collector waiting for pid 2077678
[2025-11-23 02:03:10] 2025-11-23 07:02:14,475 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 02:03:10] 2025-11-23 07:02:14,475 | INFO     | collected zombie processes
[2025-11-23 02:03:10] 2025-11-23 07:02:14,475 | INFO     | will attempt to kill all subprocesses of pid=2077678
[2025-11-23 02:03:10] 2025-11-23 07:02:15,860 | INFO     | process IDs to be killed: [2077678] (in reverse order)
[2025-11-23 02:03:10] 2025-11-23 07:02:16,196 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 02:03:10] 2025-11-23 07:02:16,196 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 02:03:10] 2025-11-23 07:02:16,309 | INFO     | did not find any defunct processes belonging to 2077678
[2025-11-23 02:03:10] 2025-11-23 07:02:16,422 | INFO     | did not find any defunct processes belonging to 2077678
[2025-11-23 02:03:10] 2025-11-23 07:02:16,534 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 02:03:10] 2025-11-23 07:02:16,534 | INFO     | ready for new job
[2025-11-23 02:03:10] 2025-11-23 07:02:16,534 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 02:03:10] 2025-11-23 07:02:16,539 | INFO     | ***************************************
[2025-11-23 02:03:10] 2025-11-23 07:02:16,539 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 02:03:10] 2025-11-23 07:02:16,539 | INFO     | ***************************************
[2025-11-23 02:03:10] 2025-11-23 07:02:16,539 | INFO     | 
[2025-11-23 02:03:10] 2025-11-23 07:02:16,561 | INFO     | architecture information:
[2025-11-23 02:03:10] 2025-11-23 07:02:16,579 | INFO     | executing command: cat /etc/os-release
[2025-11-23 02:03:10] 2025-11-23 07:02:16,688 | INFO     | cat /etc/os-release:
[2025-11-23 02:03:10] NAME="CentOS Linux"
[2025-11-23 02:03:10] VERSION="7 (Core)"
[2025-11-23 02:03:10] ID="centos"
[2025-11-23 02:03:10] ID_LIKE="rhel fedora"
[2025-11-23 02:03:10] VERSION_ID="7"
[2025-11-23 02:03:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 02:03:10] ANSI_COLOR="0;31"
[2025-11-23 02:03:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 02:03:10] HOME_URL="https://www.centos.org/"
[2025-11-23 02:03:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 02:03:10] 
[2025-11-23 02:03:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 02:03:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 02:03:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 02:03:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 02:03:10] 
[2025-11-23 02:03:10] 2025-11-23 07:02:16,688 | INFO     | ***************************************
[2025-11-23 02:03:10] 2025-11-23 07:02:17,191 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-11-23 02:03:10] 2025-11-23 07:02:17,285 | INFO     | sufficient remaining disk space (155132624896 B)
[2025-11-23 02:03:10] 2025-11-23 07:02:17,286 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 02:03:10] 2025-11-23 07:02:17,286 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 02:03:10] 2025-11-23 07:02:17,286 | INFO     | update_server=False
[2025-11-23 02:03:10] 2025-11-23 07:02:17,286 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 02:03:10] 2025-11-23 07:02:17,649 | INFO     | all job control threads have been joined
[2025-11-23 02:03:10] 2025-11-23 07:02:17,889 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 02:03:10] 2025-11-23 07:02:18,098 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 02:03:10] 2025-11-23 07:02:18,190 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 02:03:10] 2025-11-23 07:02:18,190 | INFO     | aborting loop
[2025-11-23 02:03:10] 2025-11-23 07:02:18,293 | INFO     | [job] retrieve thread has finished
[2025-11-23 02:03:10] 2025-11-23 07:02:18,349 | INFO     | [data] copytool_in thread has finished
[2025-11-23 02:03:10] 2025-11-23 07:02:18,373 | INFO     | [payload] failed_post thread has finished
[2025-11-23 02:03:10] 2025-11-23 07:02:18,376 | INFO     | all data control threads have been joined
[2025-11-23 02:03:10] 2025-11-23 07:02:18,398 | INFO     | [job] validate thread has finished
[2025-11-23 02:03:10] 2025-11-23 07:02:18,461 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 02:03:10] 2025-11-23 07:02:18,671 | INFO     | [job] control thread has finished
[2025-11-23 02:03:10] 2025-11-23 07:02:18,720 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 02:03:10] 2025-11-23 07:02:18,833 | INFO     | all payload control threads have been joined
[2025-11-23 02:03:10] 2025-11-23 07:02:18,936 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 02:03:10] 2025-11-23 07:02:18,975 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 02:03:10] 2025-11-23 07:02:19,103 | INFO     | [job] queue monitor thread has finished
[2025-11-23 02:03:10] 2025-11-23 07:02:19,196 | INFO     | [job] job monitor thread has finished
[2025-11-23 02:03:10] 2025-11-23 07:02:19,373 | INFO     | [payload] validate_post thread has finished
[2025-11-23 02:03:10] 2025-11-23 07:02:19,388 | INFO     | [data] control thread has finished
[2025-11-23 02:03:10] 2025-11-23 07:02:19,724 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 02:03:10] 2025-11-23 07:02:19,845 | INFO     | [payload] control thread has finished
[2025-11-23 02:03:10] 2025-11-23 07:02:19,924 | INFO     | [data] copytool_out thread has finished
[2025-11-23 02:03:10] 2025-11-23 07:02:22,985 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 02:03:10] 2025-11-23 07:02:37,612 | INFO     | [monitor] cgroup control has ended
[2025-11-23 02:03:10] 2025-11-23 07:02:38,129 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139967776356160)>', '<ExcThread(monitor, started 139967128917760)>']
[2025-11-23 02:03:10] 2025-11-23 07:02:43,155 | INFO     | all workflow threads have been joined
[2025-11-23 02:03:10] 2025-11-23 07:02:43,155 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 02:03:10] 2025-11-23 07:02:43,155 | INFO     | traces error code: 0
[2025-11-23 02:03:10] 2025-11-23 07:02:43,156 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 02:03:10] 2025-11-23 07:02:47,591 | INFO     | PID=2044099 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 02:03:10] 2025-11-23 07:02:47,592 | INFO     | .. there are 59 such processes running
[2025-11-23 02:03:10] 2025-11-23 07:02:47,592 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 02:03:10] 2025-11-23 07:02:47,592 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 02:03:10] 2025-11-23 07:02:47,592 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 02:03:10] 2025-11-23 07:02:47,592 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 02:03:10] 2025-11-23 07:02:47,592 | INFO     | [monitor] control thread has ended
[2025-11-23 02:03:10] 2025-11-23 07:02:48,357 [wrapper] ==== pilot stdout END ====
[2025-11-23 02:03:10] 2025-11-23 07:02:48,381 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 02:03:10] 2025-11-23 07:02:48,403 [wrapper] pilotpid: 2044099
[2025-11-23 02:03:10] 2025-11-23 07:02:48,452 [wrapper] Pilot exit status: 0
[2025-11-23 02:03:10] 2025-11-23 07:02:48,593 [wrapper] pandaids: 6894265342
[2025-11-23 02:03:10] 2025-11-23 07:02:49,026 [wrapper] cleanup supervisor_pilot 2804841 2044100
[2025-11-23 02:03:10] 2025-11-23 07:02:49,062 [wrapper] Test setup, not cleaning
[2025-11-23 02:03:10] 2025-11-23 07:02:49,185 [wrapper] apfmon messages muted
[2025-11-23 02:03:10] 2025-11-23 07:02:49,212 [wrapper] ==== wrapper stdout END ====
[2025-11-23 02:03:10] 2025-11-23 07:02:49,246 [wrapper] ==== wrapper stderr END ====
[2025-11-23 02:03:10]  *** Error codes and diagnostics ***
[2025-11-23 02:03:10]     "exeErrorCode": 0,
[2025-11-23 02:03:10]     "exeErrorDiag": "",
[2025-11-23 02:03:10]     "pilotErrorCode": 0,
[2025-11-23 02:03:10]     "pilotErrorDiag": "",
[2025-11-23 02:03:10]  *** Listing of results directory ***
[2025-11-23 02:03:11] total 1307996
[2025-11-23 02:03:11] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 23:56 pilot3.tar.gz
[2025-11-23 02:03:11] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 23:59 queuedata.json
[2025-11-23 02:03:11] -rwx------. 1 boincer umatlas     36292 Nov 21 00:00 runpilot2-wrapper.sh
[2025-11-23 02:03:11] -rw-r--r--. 1 boincer umatlas       100 Nov 22 14:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 02:03:11] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 14:29 run_atlas
[2025-11-23 02:03:11] -rw-r--r--. 1 boincer umatlas       105 Nov 22 14:29 job.xml
[2025-11-23 02:03:11] -rw-r--r--. 2 boincer umatlas 409778635 Nov 22 14:29 EVNT.47493127._002212.pool.root.1
[2025-11-23 02:03:11] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 14:29 start_atlas.sh
[2025-11-23 02:03:11] drwxrwx--x. 2 boincer umatlas      4096 Nov 22 14:29 shared
[2025-11-23 02:03:11] -rw-r--r--. 2 boincer umatlas    590108 Nov 22 14:29 input.tar.gz
[2025-11-23 02:03:11] -rw-r--r--. 1 boincer umatlas         0 Nov 22 14:29 boinc_lockfile
[2025-11-23 02:03:11] -rw-r--r--. 1 boincer umatlas      2786 Nov 22 14:29 pandaJob.out
[2025-11-23 02:03:11] -rw-------. 1 boincer umatlas        57 Nov 22 14:29 setup.sh.local
[2025-11-23 02:03:11] -rw-------. 1 boincer umatlas    989768 Nov 22 14:30 agis_schedconf.cvmfs.json
[2025-11-23 02:03:11] drwx------. 5 boincer umatlas      4096 Nov 22 14:30 pilot3
[2025-11-23 02:03:11] -rw-r--r--. 1 boincer umatlas       533 Nov 23 01:31 boinc_task_state.xml
[2025-11-23 02:03:11] -rw-r--r--. 1 boincer umatlas      7175 Nov 23 01:56 init_data.xml
[2025-11-23 02:03:11] -rw-------. 1 boincer umatlas 911490132 Nov 23 01:59 HITS.47533967._001838.pool.root.1
[2025-11-23 02:03:11] -rw-------. 1 boincer umatlas      1079 Nov 23 02:00 memory_monitor_summary.json
[2025-11-23 02:03:11] -rw-------. 1 boincer umatlas   1526164 Nov 23 02:01 agis_ddmendpoints.agis.ALL.json
[2025-11-23 02:03:11] -rw-------. 1 boincer umatlas   1891540 Nov 23 02:01 log.47533967._001838.job.log.tgz.1
[2025-11-23 02:03:11] -rw-------. 1 boincer umatlas        95 Nov 23 02:01 pilot_heartbeat.json
[2025-11-23 02:03:11] -rw-------. 1 boincer umatlas      8667 Nov 23 02:02 heartbeat.json
[2025-11-23 02:03:11] -rw-------. 1 boincer umatlas       823 Nov 23 02:02 pilotlog.txt
[2025-11-23 02:03:11] -rw-------. 1 boincer umatlas   5210108 Nov 23 02:02 log.47533967._001838.job.log.1
[2025-11-23 02:03:11] -rw-------. 1 boincer umatlas       353 Nov 23 02:02 output.list
[2025-11-23 02:03:11] -rw-r--r--. 1 boincer umatlas       620 Nov 23 02:02 runtime_log
[2025-11-23 02:03:11] -rw-------. 1 boincer umatlas   7116800 Nov 23 02:02 result.tar.gz
[2025-11-23 02:03:11] -rw-r--r--. 1 boincer umatlas      9338 Nov 23 02:02 runtime_log.err
[2025-11-23 02:03:11] -rw-------. 1 boincer umatlas       665 Nov 23 02:02 0ySNDmaRYg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm3JHKDmfMubnn.diag
[2025-11-23 02:03:11] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 02:03 boinc_mmap_file
[2025-11-23 02:03:11] -rw-r--r--. 1 boincer umatlas        29 Nov 23 02:03 wrapper_checkpoint.txt
[2025-11-23 02:03:11] -rw-r--r--. 1 boincer umatlas     21789 Nov 23 02:03 stderr.txt
[2025-11-23 02:03:11] HITS file was successfully produced:
[2025-11-23 02:03:11] -rw-------. 1 boincer umatlas 911490132 Nov 23 01:59 shared/HITS.pool.root.1
[2025-11-23 02:03:11]  *** Contents of shared directory: ***
[2025-11-23 02:03:11] total 1297860
[2025-11-23 02:03:11] -rw-r--r--. 2 boincer umatlas 409778635 Nov 22 14:29 ATLAS.root_0
[2025-11-23 02:03:11] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 14:29 start_atlas.sh
[2025-11-23 02:03:11] -rw-r--r--. 2 boincer umatlas    590108 Nov 22 14:29 input.tar.gz
[2025-11-23 02:03:11] -rw-------. 1 boincer umatlas 911490132 Nov 23 01:59 HITS.pool.root.1
[2025-11-23 02:03:11] -rw-------. 1 boincer umatlas   7116800 Nov 23 02:02 result.tar.gz
02:03:12 (2028149): run_atlas exited; CPU time 135338.547629
02:03:12 (2028149): called boinc_finish(0)

</stderr_txt>
]]>

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