Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:53:52 (29002): wrapper (7.7.26015): starting
14:53:52 (29002): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 14:53:52] Arguments: --nthreads 12
[2025-11-22 14:53:52] Threads: 12
[2025-11-22 14:53:52] Checking for CVMFS
[2025-11-22 14:53:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 14:53:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 14:53:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 14:53:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 14:53:53] 2.11.2.0 2987 282321 95076 153183 1 82 11187893 20275200 1 130560 1 126803160 99.967 16866300 13973 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 14:53:53] CVMFS is ok
[2025-11-22 14:53:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 14:53:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 14:53:53] Further information can be found at the LHC@home message board.
[2025-11-22 14:53:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 14:53:53] Checking for apptainer binary...
[2025-11-22 14:53:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 14:53:53] Running /usr/bin/apptainer --version
[2025-11-22 14:53:53] apptainer version 1.3.2-1.el7
[2025-11-22 14:53:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 14:53:54] c-205-19.aglt2.org
[2025-11-22 14:53:54] apptainer works
[2025-11-22 14:53:54] Set ATHENA_PROC_NUMBER=12
[2025-11-22 14:53:54] Set ATHENA_CORE_NUMBER=12
[2025-11-22 14:53:54] Starting ATLAS job with PandaID=6895330414
[2025-11-22 14:53:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:49:04 (6164): wrapper (7.7.26015): starting
19:49:04 (6164): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 19:49:04] Arguments: --nthreads 12
[2025-11-22 19:49:04] Threads: 12
[2025-11-22 19:49:04] This job has been restarted, cleaning up previous attempt
[2025-11-22 19:49:04] Checking for CVMFS
[2025-11-22 19:49:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 19:49:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 19:49:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 19:49:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 19:49:05] 2.11.2.0 2987 282616 94252 153191 2 56 11559501 20275201 1 130560 1 126938858 99.967 16878132 13980 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 19:49:05] CVMFS is ok
[2025-11-22 19:49:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 19:49:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 19:49:05] Further information can be found at the LHC@home message board.
[2025-11-22 19:49:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 19:49:05] Checking for apptainer binary...
[2025-11-22 19:49:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 19:49:05] Running /usr/bin/apptainer --version
[2025-11-22 19:49:05] apptainer version 1.3.2-1.el7
[2025-11-22 19:49:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 19:49:06] c-205-19.aglt2.org
[2025-11-22 19:49:06] apptainer works
[2025-11-22 19:49:06] Set ATHENA_PROC_NUMBER=12
[2025-11-22 19:49:06] Set ATHENA_CORE_NUMBER=12
[2025-11-22 19:49:06] Starting ATLAS job with PandaID=6895330414
[2025-11-22 19:49:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 03:11:11]  *** The last 200 lines of the pilot log: ***
[2025-11-23 03:11:11] 2025-11-23 08:10:53,442 | INFO     | time since job start (26492s) is within the limit (172800.0s)
[2025-11-23 03:11:11] 2025-11-23 08:10:54,180 | INFO     | monitor loop #1983: job 0:6895330414 is in state 'finished'
[2025-11-23 03:11:11] 2025-11-23 08:10:54,180 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 03:11:11] 2025-11-23 08:10:55,000 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 03:11:11] 2025-11-23 08:10:55,004 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-11-23 03:11:11] 2025-11-23 08:10:55,007 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895330414/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 03:11:11] 2025-11-23 08:10:55,007 | INFO     | extracted standard info from prmon json
[2025-11-23 03:11:11] 2025-11-23 08:10:55,007 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 03:11:11] 2025-11-23 08:10:55,008 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 03:11:11] 2025-11-23 08:10:55,015 | INFO     | fitting pss+swap vs Time
[2025-11-23 03:11:11] 2025-11-23 08:10:55,015 | INFO     | sum of square deviations: 25348078167.2532
[2025-11-23 03:11:11] 2025-11-23 08:10:55,019 | INFO     | sum of deviations: 421386362579.1059
[2025-11-23 03:11:11] 2025-11-23 08:10:55,019 | INFO     | mean x: 1763872197.815668
[2025-11-23 03:11:11] 2025-11-23 08:10:55,019 | INFO     | mean y: 3439707.013824885
[2025-11-23 03:11:11] 2025-11-23 08:10:55,020 | INFO     | intersect: -29319165525.132687
[2025-11-23 03:11:11] 2025-11-23 08:10:55,020 | INFO     | chi2: 5.615154380850105
[2025-11-23 03:11:11] 2025-11-23 08:10:55,021 | INFO     | sum of square deviations: 24482085109.249203
[2025-11-23 03:11:11] 2025-11-23 08:10:55,024 | INFO     | sum of deviations: 573288276046.4355
[2025-11-23 03:11:11] 2025-11-23 08:10:55,024 | INFO     | mean x: 1763872045.3193474
[2025-11-23 03:11:11] 2025-11-23 08:10:55,025 | INFO     | mean y: 3466425.128205128
[2025-11-23 03:11:11] 2025-11-23 08:10:55,025 | INFO     | intersect: -41300497657.80035
[2025-11-23 03:11:11] 2025-11-23 08:10:55,025 | INFO     | chi2: 3.0402826294032734
[2025-11-23 03:11:11] 2025-11-23 08:10:55,025 | INFO     | current chi2=3.0402826294032734 (change=45.85576062215068 %)
[2025-11-23 03:11:11] 2025-11-23 08:10:55,026 | INFO     | sum of square deviations: 23636019988.377438
[2025-11-23 03:11:11] 2025-11-23 08:10:55,030 | INFO     | sum of deviations: 607312465476.3118
[2025-11-23 03:11:11] 2025-11-23 08:10:55,030 | INFO     | mean x: 1763871892.8207548
[2025-11-23 03:11:11] 2025-11-23 08:10:55,030 | INFO     | mean y: 3472503.7146226414
[2025-11-23 03:11:11] 2025-11-23 08:10:55,030 | INFO     | intersect: -45318091301.87084
[2025-11-23 03:11:11] 2025-11-23 08:10:55,030 | INFO     | chi2: 2.623125262520938
[2025-11-23 03:11:11] 2025-11-23 08:10:55,031 | INFO     | current chi2=2.623125262520938 (change=13.721006160674362 %)
[2025-11-23 03:11:11] 2025-11-23 08:10:55,031 | INFO     | right removable region: 423
[2025-11-23 03:11:11] 2025-11-23 08:10:55,031 | INFO     | sum of square deviations: 24482001539.249203
[2025-11-23 03:11:11] 2025-11-23 08:10:55,035 | INFO     | sum of deviations: 271456606514.86957
[2025-11-23 03:11:11] 2025-11-23 08:10:55,035 | INFO     | mean x: 1763872350.3193474
[2025-11-23 03:11:11] 2025-11-23 08:10:55,035 | INFO     | mean y: 3466036.5337995337
[2025-11-23 03:11:11] 2025-11-23 08:10:55,035 | INFO     | intersect: -19554363080.31631
[2025-11-23 03:11:11] 2025-11-23 08:10:55,036 | INFO     | chi2: 3.153493399720566
[2025-11-23 03:11:11] 2025-11-23 08:10:55,036 | INFO     | current chi2=3.153493399720566 (change=43.83959574690903 %)
[2025-11-23 03:11:11] 2025-11-23 08:10:55,036 | INFO     | sum of square deviations: 23635931111.01644
[2025-11-23 03:11:11] 2025-11-23 08:10:55,040 | INFO     | sum of deviations: 236820792951.91507
[2025-11-23 03:11:11] 2025-11-23 08:10:55,040 | INFO     | mean x: 1763872502.8183963
[2025-11-23 03:11:11] 2025-11-23 08:10:55,040 | INFO     | mean y: 3472272.933962264
[2025-11-23 03:11:11] 2025-11-23 08:10:55,041 | INFO     | intersect: -17669691641.003674
[2025-11-23 03:11:11] 2025-11-23 08:10:55,041 | INFO     | chi2: 3.0958802693734784
[2025-11-23 03:11:11] 2025-11-23 08:10:55,041 | INFO     | current chi2=3.0958802693734784 (change=1.8269621351417082 %)
[2025-11-23 03:11:11] 2025-11-23 08:10:55,041 | INFO     | left removable region: 20
[2025-11-23 03:11:11] 2025-11-23 08:10:55,042 | INFO     | sum of square deviations: 20295097320.416904
[2025-11-23 03:11:11] 2025-11-23 08:10:55,045 | INFO     | sum of deviations: 380417807694.73694
[2025-11-23 03:11:11] 2025-11-23 08:10:55,045 | INFO     | mean x: 1763872472.325062
[2025-11-23 03:11:11] 2025-11-23 08:10:55,045 | INFO     | mean y: 3514084.5210918114
[2025-11-23 03:11:11] 2025-11-23 08:10:55,046 | INFO     | intersect: -33059076765.92829
[2025-11-23 03:11:11] 2025-11-23 08:10:55,046 | INFO     | chi2: 0.05915412645807074
[2025-11-23 03:11:11] 2025-11-23 08:10:55,046 | INFO     | current memory leak: 18.74 B/s (using 403 data points, chi2=0.06)
[2025-11-23 03:11:11] 2025-11-23 08:10:55,047 | INFO     | could have reported an average CPU frequency of 2405 MHz (18 samples)
[2025-11-23 03:11:11] 2025-11-23 08:10:55,047 | INFO     | ..............................
[2025-11-23 03:11:11] 2025-11-23 08:10:55,047 | INFO     | . Timing measurements:
[2025-11-23 03:11:11] 2025-11-23 08:10:55,047 | INFO     | . get job = 0 s
[2025-11-23 03:11:11] 2025-11-23 08:10:55,047 | INFO     | . initial setup = 2 s
[2025-11-23 03:11:11] 2025-11-23 08:10:55,047 | INFO     | . payload setup = 7 s
[2025-11-23 03:11:11] 2025-11-23 08:10:55,047 | INFO     | . stage-in = 0 s
[2025-11-23 03:11:11] 2025-11-23 08:10:55,047 | INFO     | . payload execution = 26454 s
[2025-11-23 03:11:11] 2025-11-23 08:10:55,047 | INFO     | . stage-out = 3 s
[2025-11-23 03:11:11] 2025-11-23 08:10:55,047 | INFO     | . log creation = 0 s
[2025-11-23 03:11:11] 2025-11-23 08:10:55,048 | INFO     | ..............................
[2025-11-23 03:11:11] 2025-11-23 08:10:55,440 | INFO     | 
[2025-11-23 03:11:11] 2025-11-23 08:10:55,441 | INFO     | job summary report
[2025-11-23 03:11:11] 2025-11-23 08:10:55,441 | INFO     | --------------------------------------------------
[2025-11-23 03:11:11] 2025-11-23 08:10:55,441 | INFO     | PanDA job id: 6895330414
[2025-11-23 03:11:11] 2025-11-23 08:10:55,441 | INFO     | task id: 47556137
[2025-11-23 03:11:11] 2025-11-23 08:10:55,441 | INFO     | errors: (none)
[2025-11-23 03:11:11] 2025-11-23 08:10:55,441 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 03:11:11] 2025-11-23 08:10:55,442 | INFO     | pilot state: finished 
[2025-11-23 03:11:11] 2025-11-23 08:10:55,442 | INFO     | transexitcode: 0
[2025-11-23 03:11:11] 2025-11-23 08:10:55,442 | INFO     | exeerrorcode: 0
[2025-11-23 03:11:11] 2025-11-23 08:10:55,442 | INFO     | exeerrordiag: 
[2025-11-23 03:11:11] 2025-11-23 08:10:55,442 | INFO     | exitcode: 0
[2025-11-23 03:11:11] 2025-11-23 08:10:55,442 | INFO     | exitmsg: OK
[2025-11-23 03:11:11] 2025-11-23 08:10:55,443 | INFO     | cpuconsumptiontime: 304446 s
[2025-11-23 03:11:11] 2025-11-23 08:10:55,443 | INFO     | nevents: 1000
[2025-11-23 03:11:11] 2025-11-23 08:10:55,443 | INFO     | neventsw: 0
[2025-11-23 03:11:11] 2025-11-23 08:10:55,443 | INFO     | pid: 16302
[2025-11-23 03:11:11] 2025-11-23 08:10:55,443 | INFO     | pgrp: 16302
[2025-11-23 03:11:11] 2025-11-23 08:10:55,443 | INFO     | corecount: 12
[2025-11-23 03:11:11] 2025-11-23 08:10:55,443 | INFO     | event service: False
[2025-11-23 03:11:11] 2025-11-23 08:10:55,444 | INFO     | sizes: {0: 2298636, 1: 2298835, 6: 2299097, 11: 2299125, 26466: 2336614, 26470: 2345608, 26472: 2345792, 26477: 2346038}
[2025-11-23 03:11:11] 2025-11-23 08:10:55,444 | INFO     | --------------------------------------------------
[2025-11-23 03:11:11] 2025-11-23 08:10:55,444 | INFO     | 
[2025-11-23 03:11:11] 2025-11-23 08:10:55,444 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 03:11:11] 2025-11-23 08:10:55,448 | INFO     | time since job start (26494s) is within the limit (172800.0s)
[2025-11-23 03:11:11] 2025-11-23 08:10:55,467 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 03:11:11] 2025-11-23 08:10:55,467 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 03:11:11] 2025-11-23 08:10:55,468 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 03:11:11] 2025-11-23 08:10:55,468 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 03:11:11] 2025-11-23 08:10:55,468 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 03:11:11] 2025-11-23 08:10:55,468 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 03:11:11] 2025-11-23 08:10:55,468 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 03:11:11] 2025-11-23 08:10:55,469 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 03:11:11] 2025-11-23 08:10:55,469 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 03:11:11] 2025-11-23 08:10:55,469 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 03:11:11] 2025-11-23 08:10:55,469 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 03:11:11] 2025-11-23 08:10:55,469 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 03:11:11] 2025-11-23 08:10:55,469 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 03:11:11] 2025-11-23 08:10:55,470 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 03:11:11] 2025-11-23 08:10:55,470 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 03:11:11] 2025-11-23 08:10:55,470 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 03:11:11] 2025-11-23 08:10:55,470 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 03:11:11] 2025-11-23 08:10:55,470 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 03:11:11] 2025-11-23 08:10:55,470 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 03:11:11] 2025-11-23 08:10:55,471 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 03:11:11] 2025-11-23 08:10:55,471 | INFO     | job 6895330414 has completed (purged errors)
[2025-11-23 03:11:11] 2025-11-23 08:10:55,471 | INFO     | overall cleanup function is called
[2025-11-23 03:11:11] 2025-11-23 08:10:56,488 | INFO     | --- collectZombieJob: --- 10, [16302]
[2025-11-23 03:11:11] 2025-11-23 08:10:56,488 | INFO     | zombie collector waiting for pid 16302
[2025-11-23 03:11:11] 2025-11-23 08:10:56,488 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 03:11:11] 2025-11-23 08:10:56,488 | INFO     | collected zombie processes
[2025-11-23 03:11:11] 2025-11-23 08:10:56,488 | INFO     | will attempt to kill all subprocesses of pid=16302
[2025-11-23 03:11:11] 2025-11-23 08:10:56,581 | INFO     | process IDs to be killed: [16302] (in reverse order)
[2025-11-23 03:11:11] 2025-11-23 08:10:56,632 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 03:11:11] 2025-11-23 08:10:56,633 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 03:11:11] 2025-11-23 08:10:56,637 | INFO     | did not find any defunct processes belonging to 16302
[2025-11-23 03:11:11] 2025-11-23 08:10:56,639 | INFO     | did not find any defunct processes belonging to 16302
[2025-11-23 03:11:11] 2025-11-23 08:10:56,641 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 03:11:11] 2025-11-23 08:10:56,641 | INFO     | ready for new job
[2025-11-23 03:11:11] 2025-11-23 08:10:56,641 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 03:11:11] 2025-11-23 08:10:56,643 | INFO     | ***************************************
[2025-11-23 03:11:11] 2025-11-23 08:10:56,643 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 03:11:11] 2025-11-23 08:10:56,644 | INFO     | ***************************************
[2025-11-23 03:11:11] 2025-11-23 08:10:56,644 | INFO     | 
[2025-11-23 03:11:11] 2025-11-23 08:10:56,644 | INFO     | architecture information:
[2025-11-23 03:11:11] 2025-11-23 08:10:56,645 | INFO     | executing command: cat /etc/os-release
[2025-11-23 03:11:11] 2025-11-23 08:10:56,660 | INFO     | cat /etc/os-release:
[2025-11-23 03:11:11] NAME="CentOS Linux"
[2025-11-23 03:11:11] VERSION="7 (Core)"
[2025-11-23 03:11:11] ID="centos"
[2025-11-23 03:11:11] ID_LIKE="rhel fedora"
[2025-11-23 03:11:11] VERSION_ID="7"
[2025-11-23 03:11:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 03:11:11] ANSI_COLOR="0;31"
[2025-11-23 03:11:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 03:11:11] HOME_URL="https://www.centos.org/"
[2025-11-23 03:11:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 03:11:11] 
[2025-11-23 03:11:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 03:11:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 03:11:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 03:11:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 03:11:11] 
[2025-11-23 03:11:11] 2025-11-23 08:10:56,661 | INFO     | ***************************************
[2025-11-23 03:11:11] 2025-11-23 08:10:57,164 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 03:11:11] 2025-11-23 08:10:57,182 | INFO     | sufficient remaining disk space (27815575552 B)
[2025-11-23 03:11:11] 2025-11-23 08:10:57,183 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 03:11:11] 2025-11-23 08:10:57,183 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 03:11:11] 2025-11-23 08:10:57,183 | INFO     | update_server=False
[2025-11-23 03:11:11] 2025-11-23 08:10:57,183 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 03:11:11] 2025-11-23 08:10:57,183 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-23 03:11:11] 2025-11-23 08:10:57,184 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 03:11:11] 2025-11-23 08:10:57,184 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 03:11:11] 2025-11-23 08:10:57,184 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 03:11:11] 2025-11-23 08:10:57,595 | INFO     | all payload control threads have been joined
[2025-11-23 03:11:11] 2025-11-23 08:10:57,687 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 03:11:11] 2025-11-23 08:10:57,687 | INFO     | aborting loop
[2025-11-23 03:11:11] 2025-11-23 08:10:57,937 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 03:11:11] 2025-11-23 08:10:57,999 | INFO     | all data control threads have been joined
[2025-11-23 03:11:11] 2025-11-23 08:10:58,189 | INFO     | [job] retrieve thread has finished
[2025-11-23 03:11:11] 2025-11-23 08:10:58,601 | INFO     | [payload] control thread has finished
[2025-11-23 03:11:11] 2025-11-23 08:10:58,692 | INFO     | [job] job monitor thread has finished
[2025-11-23 03:11:11] 2025-11-23 08:10:58,827 | INFO     | [payload] failed_post thread has finished
[2025-11-23 03:11:11] 2025-11-23 08:10:58,878 | INFO     | all job control threads have been joined
[2025-11-23 03:11:11] 2025-11-23 08:10:58,896 | INFO     | [data] copytool_in thread has finished
[2025-11-23 03:11:11] 2025-11-23 08:10:58,957 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 03:11:11] 2025-11-23 08:10:59,005 | INFO     | [data] control thread has finished
[2025-11-23 03:11:11] 2025-11-23 08:10:59,306 | INFO     | [job] validate thread has finished
[2025-11-23 03:11:11] 2025-11-23 08:10:59,441 | INFO     | [payload] validate_post thread has finished
[2025-11-23 03:11:11] 2025-11-23 08:10:59,514 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 03:11:11] 2025-11-23 08:10:59,625 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 03:11:11] 2025-11-23 08:10:59,648 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 03:11:11] 2025-11-23 08:10:59,884 | INFO     | [job] control thread has finished
[2025-11-23 03:11:11] 2025-11-23 08:10:59,943 | INFO     | [data] copytool_out thread has finished
[2025-11-23 03:11:11] 2025-11-23 08:11:00,138 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 03:11:11] 2025-11-23 08:11:00,258 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 03:11:11] 2025-11-23 08:11:01,143 | INFO     | [job] queue monitor thread has finished
[2025-11-23 03:11:11] 2025-11-23 08:11:04,264 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 03:11:11] 2025-11-23 08:11:04,793 | INFO     | [monitor] cgroup control has ended
[2025-11-23 03:11:11] 2025-11-23 08:11:06,435 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140228809713472)>', '<ExcThread(monitor, started 140227905570560)>']
[2025-11-23 03:11:11] 2025-11-23 08:11:07,235 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 03:11:11] 2025-11-23 08:11:07,235 | INFO     | [monitor] control thread has ended
[2025-11-23 03:11:11] 2025-11-23 08:11:11,460 | INFO     | all workflow threads have been joined
[2025-11-23 03:11:11] 2025-11-23 08:11:11,460 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 03:11:11] 2025-11-23 08:11:11,461 | INFO     | traces error code: 0
[2025-11-23 03:11:11] 2025-11-23 08:11:11,461 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 03:11:11] 2025-11-23 08:11:11,553 [wrapper] ==== pilot stdout END ====
[2025-11-23 03:11:11] 2025-11-23 08:11:11,556 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 03:11:11] 2025-11-23 08:11:11,561 [wrapper] pilotpid: 9934
[2025-11-23 03:11:11] 2025-11-23 08:11:11,565 [wrapper] Pilot exit status: 0
[2025-11-23 03:11:11] 2025-11-23 08:11:11,580 [wrapper] pandaids: 6895330414 6895330414
[2025-11-23 03:11:11] 2025-11-23 08:11:11,620 [wrapper] cleanup supervisor_pilot 16011 9935
[2025-11-23 03:11:11] 2025-11-23 08:11:11,624 [wrapper] Test setup, not cleaning
[2025-11-23 03:11:11] 2025-11-23 08:11:11,628 [wrapper] apfmon messages muted
[2025-11-23 03:11:11] 2025-11-23 08:11:11,632 [wrapper] ==== wrapper stdout END ====
[2025-11-23 03:11:11] 2025-11-23 08:11:11,636 [wrapper] ==== wrapper stderr END ====
[2025-11-23 03:11:11]  *** Error codes and diagnostics ***
[2025-11-23 03:11:11]     "exeErrorCode": 0,
[2025-11-23 03:11:11]     "exeErrorDiag": "",
[2025-11-23 03:11:11]     "pilotErrorCode": 0,
[2025-11-23 03:11:11]     "pilotErrorDiag": "",
[2025-11-23 03:11:11]  *** Listing of results directory ***
[2025-11-23 03:11:11] total 1735604
[2025-11-23 03:11:11] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-23 03:11:11] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 15:30 pilot3.tar.gz
[2025-11-23 03:11:11] -rwx------ 1 boincer umatlas     36292 Nov 21 15:52 runpilot2-wrapper.sh
[2025-11-23 03:11:11] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 15:52 queuedata.json
[2025-11-23 03:11:11] -rw-r--r-- 1 boincer umatlas       100 Nov 22 14:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 03:11:11] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 14:53 run_atlas
[2025-11-23 03:11:11] -rw-r--r-- 1 boincer umatlas       105 Nov 22 14:53 job.xml
[2025-11-23 03:11:11] -rw-r--r-- 3 boincer umatlas 411646002 Nov 22 14:53 EVNT.47483658._000137.pool.root.1
[2025-11-23 03:11:11] -rw-r--r-- 3 boincer umatlas 411646002 Nov 22 14:53 ATLAS.root_0
[2025-11-23 03:11:11] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 14:53 start_atlas.sh
[2025-11-23 03:11:11] drwxrwx--x 2 boincer umatlas      4096 Nov 22 14:53 shared
[2025-11-23 03:11:11] -rw-r--r-- 2 boincer umatlas    590099 Nov 22 14:53 input.tar.gz
[2025-11-23 03:11:11] -rw-r--r-- 1 boincer umatlas         0 Nov 22 14:53 boinc_lockfile
[2025-11-23 03:11:11] -rw-r--r-- 1 boincer umatlas      2786 Nov 22 19:49 pandaJob.out
[2025-11-23 03:11:11] -rw------- 1 boincer umatlas        57 Nov 22 19:49 setup.sh.local
[2025-11-23 03:11:11] -rw------- 1 boincer umatlas    989784 Nov 22 19:49 agis_schedconf.cvmfs.json
[2025-11-23 03:11:11] -rw-r--r-- 1 boincer umatlas       533 Nov 23 03:02 boinc_task_state.xml
[2025-11-23 03:11:11] -rw-r--r-- 1 boincer umatlas      5955 Nov 23 03:02 init_data.xml
[2025-11-23 03:11:11] -rw------- 1 boincer umatlas 938257396 Nov 23 03:10 HITS.47556137._001365.pool.root.1
[2025-11-23 03:11:11] -rw-r--r-- 1 boincer umatlas        29 Nov 23 03:10 wrapper_checkpoint.txt
[2025-11-23 03:11:11] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 03:10 boinc_mmap_file
[2025-11-23 03:11:11] -rw------- 1 boincer umatlas        96 Nov 23 03:10 pilot_heartbeat.json
[2025-11-23 03:11:11] -rw------- 1 boincer umatlas      1059 Nov 23 03:10 memory_monitor_summary.json
[2025-11-23 03:11:11] -rw------- 1 boincer umatlas   1526164 Nov 23 03:10 agis_ddmendpoints.agis.ALL.json
[2025-11-23 03:11:11] -rw------- 1 boincer umatlas   2186995 Nov 23 03:10 log.47556137._001365.job.log.tgz.1
[2025-11-23 03:11:11] -rw------- 1 boincer umatlas      8665 Nov 23 03:10 heartbeat.json
[2025-11-23 03:11:11] -rw------- 1 boincer umatlas      4552 Nov 23 03:11 pilotlog.txt
[2025-11-23 03:11:11] -rw------- 1 boincer umatlas   3700267 Nov 23 03:11 log.47556137._001365.job.log.1
[2025-11-23 03:11:11] -rw------- 1 boincer umatlas       353 Nov 23 03:11 output.list
[2025-11-23 03:11:11] -rw-r--r-- 1 boincer umatlas       620 Nov 23 03:11 runtime_log
[2025-11-23 03:11:11] -rw------- 1 boincer umatlas   5908480 Nov 23 03:11 result.tar.gz
[2025-11-23 03:11:11] -rw-r--r-- 1 boincer umatlas      9430 Nov 23 03:11 runtime_log.err
[2025-11-23 03:11:11] -rw------- 1 boincer umatlas       795 Nov 23 03:11 o0vNDmfIng8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmdoHKDmKdo7Vo.diag
[2025-11-23 03:11:11] -rw-r--r-- 1 boincer umatlas     23402 Nov 23 03:11 stderr.txt
[2025-11-23 03:11:11] HITS file was successfully produced:
[2025-11-23 03:11:11] -rw------- 1 boincer umatlas 938257396 Nov 23 03:10 shared/HITS.pool.root.1
[2025-11-23 03:11:11]  *** Contents of shared directory: ***
[2025-11-23 03:11:11] total 1324644
[2025-11-23 03:11:11] -rw-r--r-- 3 boincer umatlas 411646002 Nov 22 14:53 ATLAS.root_0
[2025-11-23 03:11:11] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 14:53 start_atlas.sh
[2025-11-23 03:11:11] -rw-r--r-- 2 boincer umatlas    590099 Nov 22 14:53 input.tar.gz
[2025-11-23 03:11:11] -rw------- 1 boincer umatlas 938257396 Nov 23 03:10 HITS.pool.root.1
[2025-11-23 03:11:11] -rw------- 1 boincer umatlas   5908480 Nov 23 03:11 result.tar.gz
03:11:13 (6164): run_atlas exited; CPU time 297696.503489
03:11:13 (6164): called boinc_finish(0)

</stderr_txt>
]]>

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