Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:23:09 (26681): wrapper (7.7.26015): starting
14:23:09 (26681): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 14:23:09] Arguments: --nthreads 8
[2025-11-22 14:23:09] Threads: 8
[2025-11-22 14:23:09] Checking for CVMFS
[2025-11-22 14:23:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 14:23:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 14:23:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 14:23:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 14:23:09] 2.11.2.0 3838 137119 126372 153183 3 90 12506471 18432001 1725 130560 0 112772946 99.988 4876267 26937 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 14:23:09] CVMFS is ok
[2025-11-22 14:23:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 14:23:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 14:23:09] Further information can be found at the LHC@home message board.
[2025-11-22 14:23:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 14:23:09] Checking for apptainer binary...
[2025-11-22 14:23:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 14:23:09] Running /usr/bin/apptainer --version
[2025-11-22 14:23:09] apptainer version 1.3.2-1.el7
[2025-11-22 14:23:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 14:23:10] c-206-4.aglt2.org
[2025-11-22 14:23:10] apptainer works
[2025-11-22 14:23:10] Set ATHENA_PROC_NUMBER=8
[2025-11-22 14:23:10] Set ATHENA_CORE_NUMBER=8
[2025-11-22 14:23:10] Starting ATLAS job with PandaID=6893876885
[2025-11-22 14:23:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 09:29:23]  *** The last 200 lines of the pilot log: ***
[2025-11-23 09:29:23] 2025-11-23 14:28:51,243 | INFO     | PID=30445 has CPU usage=10.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-23 09:29:23] 2025-11-23 14:28:51,243 | INFO     | .. there are 3 such processes running
[2025-11-23 09:29:23] 2025-11-23 14:28:51,591 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 09:29:23] 2025-11-23 14:28:51,596 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2111.8333333333335
[2025-11-23 09:29:23] 2025-11-23 14:28:51,599 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893876885/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 09:29:23] 2025-11-23 14:28:51,600 | INFO     | extracted standard info from prmon json
[2025-11-23 09:29:23] 2025-11-23 14:28:51,600 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 09:29:23] 2025-11-23 14:28:51,600 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 09:29:23] 2025-11-23 14:28:51,615 | INFO     | fitting pss+swap vs Time
[2025-11-23 09:29:23] 2025-11-23 14:28:51,616 | INFO     | sum of square deviations: 443863334990.0708
[2025-11-23 09:29:23] 2025-11-23 14:28:51,639 | INFO     | sum of deviations: 2189199572621.263
[2025-11-23 09:29:23] 2025-11-23 14:28:51,639 | INFO     | mean x: 1763873771.538598
[2025-11-23 09:29:23] 2025-11-23 14:28:51,639 | INFO     | mean y: 3070207.2812777283
[2025-11-23 09:29:23] 2025-11-23 14:28:51,639 | INFO     | intersect: -8696615940.249998
[2025-11-23 09:29:23] 2025-11-23 14:28:51,640 | INFO     | chi2: 5.80078491799597
[2025-11-23 09:29:23] 2025-11-23 14:28:51,641 | INFO     | sum of square deviations: 437982005196.1143
[2025-11-23 09:29:23] 2025-11-23 14:28:51,663 | INFO     | sum of deviations: 2579775967336.7397
[2025-11-23 09:29:23] 2025-11-23 14:28:51,664 | INFO     | mean x: 1763873619.0409982
[2025-11-23 09:29:23] 2025-11-23 14:28:51,664 | INFO     | mean y: 3080330.201426025
[2025-11-23 09:29:23] 2025-11-23 14:28:51,664 | INFO     | intersect: -10386384802.695356
[2025-11-23 09:29:23] 2025-11-23 14:28:51,665 | INFO     | chi2: 2.7820425260641235
[2025-11-23 09:29:23] 2025-11-23 14:28:51,665 | INFO     | current chi2=2.7820425260641235 (change=52.04023997798471 %)
[2025-11-23 09:29:23] 2025-11-23 14:28:51,666 | INFO     | sum of square deviations: 432152862427.1427
[2025-11-23 09:29:23] 2025-11-23 14:28:51,688 | INFO     | sum of deviations: 2662768300435.594
[2025-11-23 09:29:23] 2025-11-23 14:28:51,688 | INFO     | mean x: 1763873466.5434198
[2025-11-23 09:29:23] 2025-11-23 14:28:51,688 | INFO     | mean y: 3082497.781557744
[2025-11-23 09:29:23] 2025-11-23 14:28:51,688 | INFO     | intersect: -10865262389.053713
[2025-11-23 09:29:23] 2025-11-23 14:28:51,689 | INFO     | chi2: 2.5091918628154635
[2025-11-23 09:29:23] 2025-11-23 14:28:51,690 | INFO     | current chi2=2.5091918628154635 (change=9.80756622849593 %)
[2025-11-23 09:29:23] 2025-11-23 14:28:51,690 | INFO     | right removable region: 1116
[2025-11-23 09:29:23] 2025-11-23 14:28:51,691 | INFO     | sum of square deviations: 437981634926.1144
[2025-11-23 09:29:23] 2025-11-23 14:28:51,712 | INFO     | sum of deviations: 1858837546179.0059
[2025-11-23 09:29:23] 2025-11-23 14:28:51,713 | INFO     | mean x: 1763873924.0409982
[2025-11-23 09:29:23] 2025-11-23 14:28:51,713 | INFO     | mean y: 3078763.891265597
[2025-11-23 09:29:23] 2025-11-23 14:28:51,713 | INFO     | intersect: -7482977306.21454
[2025-11-23 09:29:23] 2025-11-23 14:28:51,714 | INFO     | chi2: 3.572448916750484
[2025-11-23 09:29:23] 2025-11-23 14:28:51,714 | INFO     | current chi2=3.572448916750484 (change=38.41438758283287 %)
[2025-11-23 09:29:23] 2025-11-23 14:28:51,715 | INFO     | sum of square deviations: 432152121887.1437
[2025-11-23 09:29:23] 2025-11-23 14:28:51,737 | INFO     | sum of deviations: 1773366710218.5674
[2025-11-23 09:29:23] 2025-11-23 14:28:51,737 | INFO     | mean x: 1763874076.5434198
[2025-11-23 09:29:23] 2025-11-23 14:28:51,737 | INFO     | mean y: 3080999.410922113
[2025-11-23 09:29:23] 2025-11-23 14:28:51,737 | INFO     | intersect: -7235100673.052305
[2025-11-23 09:29:23] 2025-11-23 14:28:51,738 | INFO     | chi2: 3.5048585821718126
[2025-11-23 09:29:23] 2025-11-23 14:28:51,738 | INFO     | current chi2=3.5048585821718126 (change=1.8919888332553667 %)
[2025-11-23 09:29:23] 2025-11-23 14:28:51,738 | INFO     | left removable region: 20
[2025-11-23 09:29:23] 2025-11-23 14:28:51,739 | INFO     | sum of square deviations: 408233615559.82404
[2025-11-23 09:29:23] 2025-11-23 14:28:51,760 | INFO     | sum of deviations: 2126249068702.3054
[2025-11-23 09:29:23] 2025-11-23 14:28:51,760 | INFO     | mean x: 1763874046.053832
[2025-11-23 09:29:23] 2025-11-23 14:28:51,760 | INFO     | mean y: 3096530.045620438
[2025-11-23 09:29:23] 2025-11-23 14:28:51,760 | INFO     | intersect: -9183887110.65
[2025-11-23 09:29:23] 2025-11-23 14:28:51,761 | INFO     | chi2: 0.16336801978365653
[2025-11-23 09:29:23] 2025-11-23 14:28:51,761 | INFO     | current memory leak: 5.21 B/s (using 1096 data points, chi2=0.16)
[2025-11-23 09:29:23] 2025-11-23 14:28:51,762 | INFO     | could have reported an average CPU frequency of 2611 MHz (41 samples)
[2025-11-23 09:29:23] 2025-11-23 14:28:51,762 | INFO     | ..............................
[2025-11-23 09:29:23] 2025-11-23 14:28:51,762 | INFO     | . Timing measurements:
[2025-11-23 09:29:23] 2025-11-23 14:28:51,762 | INFO     | . get job = 0 s
[2025-11-23 09:29:23] 2025-11-23 14:28:51,762 | INFO     | . initial setup = 2 s
[2025-11-23 09:29:23] 2025-11-23 14:28:51,762 | INFO     | . payload setup = 5 s
[2025-11-23 09:29:23] 2025-11-23 14:28:51,762 | INFO     | . stage-in = 0 s
[2025-11-23 09:29:23] 2025-11-23 14:28:51,763 | INFO     | . payload execution = 68696 s
[2025-11-23 09:29:23] 2025-11-23 14:28:51,763 | INFO     | . stage-out = 3 s
[2025-11-23 09:29:23] 2025-11-23 14:28:51,763 | INFO     | . log creation = 0 s
[2025-11-23 09:29:23] 2025-11-23 14:28:51,763 | INFO     | ..............................
[2025-11-23 09:29:23] 2025-11-23 14:28:51,834 | INFO     | 
[2025-11-23 09:29:23] 2025-11-23 14:28:51,835 | INFO     | job summary report
[2025-11-23 09:29:23] 2025-11-23 14:28:51,835 | INFO     | --------------------------------------------------
[2025-11-23 09:29:23] 2025-11-23 14:28:51,835 | INFO     | PanDA job id: 6893876885
[2025-11-23 09:29:23] 2025-11-23 14:28:51,835 | INFO     | task id: 47523449
[2025-11-23 09:29:23] 2025-11-23 14:28:51,835 | INFO     | errors: (none)
[2025-11-23 09:29:23] 2025-11-23 14:28:51,835 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 09:29:23] 2025-11-23 14:28:51,835 | INFO     | pilot state: finished 
[2025-11-23 09:29:23] 2025-11-23 14:28:51,835 | INFO     | transexitcode: 0
[2025-11-23 09:29:23] 2025-11-23 14:28:51,835 | INFO     | exeerrorcode: 0
[2025-11-23 09:29:23] 2025-11-23 14:28:51,835 | INFO     | exeerrordiag: 
[2025-11-23 09:29:23] 2025-11-23 14:28:51,836 | INFO     | exitcode: 0
[2025-11-23 09:29:23] 2025-11-23 14:28:51,836 | INFO     | exitmsg: OK
[2025-11-23 09:29:23] 2025-11-23 14:28:51,836 | INFO     | cpuconsumptiontime: 530645 s
[2025-11-23 09:29:23] 2025-11-23 14:28:51,836 | INFO     | nevents: 1000
[2025-11-23 09:29:23] 2025-11-23 14:28:51,836 | INFO     | neventsw: 0
[2025-11-23 09:29:23] 2025-11-23 14:28:51,836 | INFO     | pid: 4576
[2025-11-23 09:29:23] 2025-11-23 14:28:51,836 | INFO     | pgrp: 4576
[2025-11-23 09:29:23] 2025-11-23 14:28:51,836 | INFO     | corecount: 8
[2025-11-23 09:29:23] 2025-11-23 14:28:51,836 | INFO     | event service: False
[2025-11-23 09:29:23] 2025-11-23 14:28:51,836 | INFO     | sizes: {0: 2298585, 1: 2298784, 4: 2299046, 12: 2299074, 68705: 2355046, 68708: 2364040, 68709: 2364224, 68714: 2364566}
[2025-11-23 09:29:23] 2025-11-23 14:28:51,836 | INFO     | --------------------------------------------------
[2025-11-23 09:29:23] 2025-11-23 14:28:51,837 | INFO     | 
[2025-11-23 09:29:23] 2025-11-23 14:28:51,837 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 09:29:23] 2025-11-23 14:28:51,851 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 09:29:23] 2025-11-23 14:28:51,851 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 09:29:23] 2025-11-23 14:28:51,851 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 09:29:23] 2025-11-23 14:28:51,851 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 09:29:23] 2025-11-23 14:28:51,851 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 09:29:23] 2025-11-23 14:28:51,851 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 09:29:23] 2025-11-23 14:28:51,852 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 09:29:23] 2025-11-23 14:28:51,852 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 09:29:23] 2025-11-23 14:28:51,852 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 09:29:23] 2025-11-23 14:28:51,852 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 09:29:23] 2025-11-23 14:28:51,852 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 09:29:23] 2025-11-23 14:28:51,852 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 09:29:23] 2025-11-23 14:28:51,852 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 09:29:23] 2025-11-23 14:28:51,852 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 09:29:23] 2025-11-23 14:28:51,852 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 09:29:23] 2025-11-23 14:28:51,853 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 09:29:23] 2025-11-23 14:28:51,853 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 09:29:23] 2025-11-23 14:28:51,853 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 09:29:23] 2025-11-23 14:28:51,853 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 09:29:23] 2025-11-23 14:28:51,853 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 09:29:23] 2025-11-23 14:28:51,853 | INFO     | job 6893876885 has completed (purged errors)
[2025-11-23 09:29:23] 2025-11-23 14:28:51,853 | INFO     | overall cleanup function is called
[2025-11-23 09:29:23] 2025-11-23 14:28:52,865 | INFO     | --- collectZombieJob: --- 10, [4576]
[2025-11-23 09:29:23] 2025-11-23 14:28:52,865 | INFO     | zombie collector waiting for pid 4576
[2025-11-23 09:29:23] 2025-11-23 14:28:52,865 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 09:29:23] 2025-11-23 14:28:52,865 | INFO     | collected zombie processes
[2025-11-23 09:29:23] 2025-11-23 14:28:52,865 | INFO     | will attempt to kill all subprocesses of pid=4576
[2025-11-23 09:29:23] 2025-11-23 14:28:52,977 | INFO     | process IDs to be killed: [4576] (in reverse order)
[2025-11-23 09:29:23] 2025-11-23 14:28:53,018 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 09:29:23] 2025-11-23 14:28:53,018 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 09:29:23] 2025-11-23 14:28:53,021 | INFO     | did not find any defunct processes belonging to 4576
[2025-11-23 09:29:23] 2025-11-23 14:28:53,023 | INFO     | did not find any defunct processes belonging to 4576
[2025-11-23 09:29:23] 2025-11-23 14:28:53,024 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 09:29:23] 2025-11-23 14:28:53,025 | INFO     | ready for new job
[2025-11-23 09:29:23] 2025-11-23 14:28:53,025 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 09:29:23] 2025-11-23 14:28:53,028 | INFO     | ***************************************
[2025-11-23 09:29:23] 2025-11-23 14:28:53,029 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 09:29:23] 2025-11-23 14:28:53,029 | INFO     | ***************************************
[2025-11-23 09:29:23] 2025-11-23 14:28:53,029 | INFO     | 
[2025-11-23 09:29:23] 2025-11-23 14:28:53,030 | INFO     | architecture information:
[2025-11-23 09:29:23] 2025-11-23 14:28:53,030 | INFO     | executing command: cat /etc/os-release
[2025-11-23 09:29:23] 2025-11-23 14:28:53,043 | INFO     | cat /etc/os-release:
[2025-11-23 09:29:23] NAME="CentOS Linux"
[2025-11-23 09:29:23] VERSION="7 (Core)"
[2025-11-23 09:29:23] ID="centos"
[2025-11-23 09:29:23] ID_LIKE="rhel fedora"
[2025-11-23 09:29:23] VERSION_ID="7"
[2025-11-23 09:29:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 09:29:23] ANSI_COLOR="0;31"
[2025-11-23 09:29:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 09:29:23] HOME_URL="https://www.centos.org/"
[2025-11-23 09:29:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 09:29:23] 
[2025-11-23 09:29:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 09:29:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 09:29:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 09:29:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 09:29:23] 
[2025-11-23 09:29:23] 2025-11-23 14:28:53,043 | INFO     | ***************************************
[2025-11-23 09:29:23] 2025-11-23 14:28:53,546 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 09:29:23] 2025-11-23 14:28:53,563 | INFO     | sufficient remaining disk space (26288848896 B)
[2025-11-23 09:29:23] 2025-11-23 14:28:53,564 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 09:29:23] 2025-11-23 14:28:53,564 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 09:29:23] 2025-11-23 14:28:53,564 | INFO     | update_server=False
[2025-11-23 09:29:23] 2025-11-23 14:28:53,564 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 09:29:23] 2025-11-23 14:28:53,565 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 09:29:23] 2025-11-23 14:28:54,081 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 09:29:23] 2025-11-23 14:28:54,154 | INFO     | all job control threads have been joined
[2025-11-23 09:29:23] 2025-11-23 14:28:54,155 | INFO     | all data control threads have been joined
[2025-11-23 09:29:23] 2025-11-23 14:28:54,262 | INFO     | all payload control threads have been joined
[2025-11-23 09:29:23] 2025-11-23 14:28:54,525 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 09:29:23] 2025-11-23 14:28:54,525 | INFO     | aborting loop
[2025-11-23 09:29:23] 2025-11-23 14:28:54,570 | INFO     | [job] queue monitor thread has finished
[2025-11-23 09:29:23] 2025-11-23 14:28:54,571 | INFO     | [job] retrieve thread has finished
[2025-11-23 09:29:23] 2025-11-23 14:28:55,004 | INFO     | [payload] validate_post thread has finished
[2025-11-23 09:29:23] 2025-11-23 14:28:55,095 | INFO     | [data] copytool_in thread has finished
[2025-11-23 09:29:23] 2025-11-23 14:28:55,159 | INFO     | [job] control thread has finished
[2025-11-23 09:29:23] 2025-11-23 14:28:55,161 | INFO     | [data] control thread has finished
[2025-11-23 09:29:23] 2025-11-23 14:28:55,267 | INFO     | [payload] control thread has finished
[2025-11-23 09:29:23] 2025-11-23 14:28:55,327 | INFO     | [payload] failed_post thread has finished
[2025-11-23 09:29:23] 2025-11-23 14:28:55,530 | INFO     | [job] job monitor thread has finished
[2025-11-23 09:29:23] 2025-11-23 14:28:55,594 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 09:29:23] 2025-11-23 14:28:55,596 | INFO     | [job] validate thread has finished
[2025-11-23 09:29:23] 2025-11-23 14:28:55,723 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 09:29:23] 2025-11-23 14:28:55,878 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 09:29:23] 2025-11-23 14:28:56,087 | INFO     | [data] copytool_out thread has finished
[2025-11-23 09:29:23] 2025-11-23 14:28:56,982 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 09:29:23] 2025-11-23 14:29:00,987 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 09:29:23] 2025-11-23 14:29:03,695 | INFO     | job.realtimelogging is not enabled
[2025-11-23 09:29:23] 2025-11-23 14:29:04,700 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 09:29:23] 2025-11-23 14:29:16,522 | INFO     | [monitor] cgroup control has ended
[2025-11-23 09:29:23] 2025-11-23 14:29:17,829 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139633119250240)>', '<ExcThread(monitor, started 139632540907264)>']
[2025-11-23 09:29:23] 2025-11-23 14:29:22,856 | INFO     | all workflow threads have been joined
[2025-11-23 09:29:23] 2025-11-23 14:29:22,856 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 09:29:23] 2025-11-23 14:29:22,856 | INFO     | traces error code: 0
[2025-11-23 09:29:23] 2025-11-23 14:29:22,857 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 09:29:23] 2025-11-23 14:29:23,449 | INFO     | PID=30445 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 09:29:23] 2025-11-23 14:29:23,449 | INFO     | .. there are 3 such processes running
[2025-11-23 09:29:23] 2025-11-23 14:29:23,450 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 09:29:23] 2025-11-23 14:29:23,450 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 09:29:23] 2025-11-23 14:29:23,451 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 09:29:23] 2025-11-23 14:29:23,451 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 09:29:23] 2025-11-23 14:29:23,451 | INFO     | [monitor] control thread has ended
[2025-11-23 09:29:23] 2025-11-23 14:29:23,571 [wrapper] ==== pilot stdout END ====
[2025-11-23 09:29:23] 2025-11-23 14:29:23,574 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 09:29:23] 2025-11-23 14:29:23,576 [wrapper] pilotpid: 30445
[2025-11-23 09:29:23] 2025-11-23 14:29:23,579 [wrapper] Pilot exit status: 0
[2025-11-23 09:29:23] 2025-11-23 14:29:23,588 [wrapper] pandaids: 6893876885
[2025-11-23 09:29:23] 2025-11-23 14:29:23,628 [wrapper] cleanup supervisor_pilot  1777 30446
[2025-11-23 09:29:23] 2025-11-23 14:29:23,631 [wrapper] Test setup, not cleaning
[2025-11-23 09:29:23] 2025-11-23 14:29:23,634 [wrapper] apfmon messages muted
[2025-11-23 09:29:23] 2025-11-23 14:29:23,636 [wrapper] ==== wrapper stdout END ====
[2025-11-23 09:29:23] 2025-11-23 14:29:23,639 [wrapper] ==== wrapper stderr END ====
[2025-11-23 09:29:23]  *** Error codes and diagnostics ***
[2025-11-23 09:29:23]     "exeErrorCode": 0,
[2025-11-23 09:29:23]     "exeErrorDiag": "",
[2025-11-23 09:29:23]     "pilotErrorCode": 0,
[2025-11-23 09:29:23]     "pilotErrorDiag": "",
[2025-11-23 09:29:23]  *** Listing of results directory ***
[2025-11-23 09:29:23] total 1329740
[2025-11-23 09:29:23] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 12:52 pilot3.tar.gz
[2025-11-23 09:29:23] -rwx------ 1 boincer umatlas     36292 Nov 20 13:01 runpilot2-wrapper.sh
[2025-11-23 09:29:23] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 13:01 queuedata.json
[2025-11-23 09:29:23] -rw-r--r-- 1 boincer umatlas       100 Nov 22 14:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 09:29:23] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 14:23 run_atlas
[2025-11-23 09:29:23] -rw-r--r-- 1 boincer umatlas       105 Nov 22 14:23 job.xml
[2025-11-23 09:29:23] -rw-r--r-- 2 boincer umatlas 411067994 Nov 22 14:23 EVNT.47493127._000781.pool.root.1
[2025-11-23 09:29:23] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 14:23 start_atlas.sh
[2025-11-23 09:29:23] drwxrwx--x 2 boincer umatlas      4096 Nov 22 14:23 shared
[2025-11-23 09:29:23] -rw-r--r-- 2 boincer umatlas    590098 Nov 22 14:23 input.tar.gz
[2025-11-23 09:29:23] -rw-r--r-- 1 boincer umatlas         0 Nov 22 14:23 boinc_lockfile
[2025-11-23 09:29:23] -rw-r--r-- 1 boincer umatlas      2785 Nov 22 14:23 pandaJob.out
[2025-11-23 09:29:23] -rw------- 1 boincer umatlas        57 Nov 22 14:23 setup.sh.local
[2025-11-23 09:29:23] -rw------- 1 boincer umatlas    989768 Nov 22 14:23 agis_schedconf.cvmfs.json
[2025-11-23 09:29:23] drwx------ 5 boincer umatlas      4096 Nov 22 14:23 pilot3
[2025-11-23 09:29:23] -rw-r--r-- 1 boincer umatlas       533 Nov 23 09:19 boinc_task_state.xml
[2025-11-23 09:29:23] -rw-r--r-- 1 boincer umatlas      5953 Nov 23 09:27 init_data.xml
[2025-11-23 09:29:23] -rw------- 1 boincer umatlas 923038757 Nov 23 09:28 HITS.47523449._007803.pool.root.1
[2025-11-23 09:29:23] -rw------- 1 boincer umatlas      1068 Nov 23 09:28 memory_monitor_summary.json
[2025-11-23 09:29:23] -rw------- 1 boincer umatlas   1526164 Nov 23 09:28 agis_ddmendpoints.agis.ALL.json
[2025-11-23 09:29:23] -rw------- 1 boincer umatlas   2293866 Nov 23 09:28 log.47523449._007803.job.log.tgz.1
[2025-11-23 09:29:23] -rw------- 1 boincer umatlas      8649 Nov 23 09:28 heartbeat.json
[2025-11-23 09:29:23] -rw-r--r-- 1 boincer umatlas        29 Nov 23 09:29 wrapper_checkpoint.txt
[2025-11-23 09:29:23] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 09:29 boinc_mmap_file
[2025-11-23 09:29:23] -rw------- 1 boincer umatlas        95 Nov 23 09:29 pilot_heartbeat.json
[2025-11-23 09:29:23] -rw------- 1 boincer umatlas       820 Nov 23 09:29 pilotlog.txt
[2025-11-23 09:29:23] -rw------- 1 boincer umatlas   9516865 Nov 23 09:29 log.47523449._007803.job.log.1
[2025-11-23 09:29:23] -rw------- 1 boincer umatlas       353 Nov 23 09:29 output.list
[2025-11-23 09:29:23] -rw-r--r-- 1 boincer umatlas       620 Nov 23 09:29 runtime_log
[2025-11-23 09:29:23] -rw------- 1 boincer umatlas  11827200 Nov 23 09:29 result.tar.gz
[2025-11-23 09:29:23] -rw-r--r-- 1 boincer umatlas      9338 Nov 23 09:29 runtime_log.err
[2025-11-23 09:29:23] -rw------- 1 boincer umatlas       667 Nov 23 09:29 0elMDmd9Ng8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQwGKDmVLR73m.diag
[2025-11-23 09:29:23] -rw-r--r-- 1 boincer umatlas     21329 Nov 23 09:29 stderr.txt
[2025-11-23 09:29:23] HITS file was successfully produced:
[2025-11-23 09:29:23] -rw------- 1 boincer umatlas 923038757 Nov 23 09:28 shared/HITS.pool.root.1
[2025-11-23 09:29:23]  *** Contents of shared directory: ***
[2025-11-23 09:29:23] total 1315000
[2025-11-23 09:29:23] -rw-r--r-- 2 boincer umatlas 411067994 Nov 22 14:23 ATLAS.root_0
[2025-11-23 09:29:23] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 14:23 start_atlas.sh
[2025-11-23 09:29:23] -rw-r--r-- 2 boincer umatlas    590098 Nov 22 14:23 input.tar.gz
[2025-11-23 09:29:23] -rw------- 1 boincer umatlas 923038757 Nov 23 09:28 HITS.pool.root.1
[2025-11-23 09:29:23] -rw------- 1 boincer umatlas  11827200 Nov 23 09:29 result.tar.gz
09:29:25 (26681): run_atlas exited; CPU time 529846.979009
09:29:25 (26681): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN