Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:49:46 (3819739): wrapper (7.7.26015): starting
18:49:46 (3819739): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 18:49:46] Arguments: --nthreads 8
[2025-11-22 18:49:46] Threads: 8
[2025-11-22 18:49:46] Checking for CVMFS
[2025-11-22 18:49:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 18:49:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 18:49:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 18:49:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 18:49:47] 2.13.2.0 6099 29324 300120 153190 2 89 29061826 40960001 10765 16776704 0 30185804 99.750 20598851 36247 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 18:49:47] CVMFS is ok
[2025-11-22 18:49:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 18:49:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 18:49:47] Further information can be found at the LHC@home message board.
[2025-11-22 18:49:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 18:49:47] Checking for apptainer binary...
[2025-11-22 18:49:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 18:49:47] Running /usr/bin/apptainer --version
[2025-11-22 18:49:47] apptainer version 1.4.4-1.el9
[2025-11-22 18:49:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 18:49:47] c-210-31-2.aglt2.org
[2025-11-22 18:49:47] apptainer works
[2025-11-22 18:49:47] Set ATHENA_PROC_NUMBER=8
[2025-11-22 18:49:47] Set ATHENA_CORE_NUMBER=8
[2025-11-22 18:49:47] Starting ATLAS job with PandaID=6893876603
[2025-11-22 18:49:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:00:10 (3819739): BOINC client no longer exists - exiting
14:00:10 (3819739): timer handler: client dead, exiting
14:10:13 (3193800): wrapper (7.7.26015): starting
14:10:13 (3193800): wrapper: running run_atlas (--nthreads 10)
[2025-11-24 14:10:13] Arguments: --nthreads 10
[2025-11-24 14:10:13] Threads: 10
[2025-11-24 14:10:13] This job has been restarted, cleaning up previous attempt
[2025-11-24 14:10:14] Checking for CVMFS
[2025-11-24 14:10:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 14:10:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 14:10:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 14:10:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 14:10:17] 2.13.2.0 6099 31924 293256 153256 1 13 37518225 40960001 10251 16776704 0 34450395 99.753 22396002 36199 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 14:10:17] CVMFS is ok
[2025-11-24 14:10:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 14:10:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 14:10:17] Further information can be found at the LHC@home message board.
[2025-11-24 14:10:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 14:10:17] Checking for apptainer binary...
[2025-11-24 14:10:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 14:10:17] Running /usr/bin/apptainer --version
[2025-11-24 14:10:17] apptainer version 1.4.4-1.el9
[2025-11-24 14:10:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 14:10:18] c-210-31-2.aglt2.org
[2025-11-24 14:10:18] apptainer works
[2025-11-24 14:10:18] Set ATHENA_PROC_NUMBER=10
[2025-11-24 14:10:18] Set ATHENA_CORE_NUMBER=10
[2025-11-24 14:10:18] Starting ATLAS job with PandaID=6893876603
[2025-11-24 14:10:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 12:41:47]  *** The last 200 lines of the pilot log: ***
[2025-11-25 12:41:47] 2025-11-25 17:41:00,859 | INFO     | time since job start (81014s) is within the limit (172800.0s)
[2025-11-25 12:41:47] 2025-11-25 17:41:01,626 | INFO     | monitor loop #4795: job 0:6893876603 is in state 'finished'
[2025-11-25 12:41:47] 2025-11-25 17:41:01,627 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:41:47] 2025-11-25 17:41:02,874 | INFO     | time since job start (81016s) is within the limit (172800.0s)
[2025-11-25 12:41:47] 2025-11-25 17:41:04,148 | INFO     | monitor loop #4796: job 0:6893876603 is in state 'finished'
[2025-11-25 12:41:47] 2025-11-25 17:41:04,150 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:41:47] 2025-11-25 17:41:04,881 | INFO     | time since job start (81018s) is within the limit (172800.0s)
[2025-11-25 12:41:47] 2025-11-25 17:41:06,670 | INFO     | monitor loop #4797: job 0:6893876603 is in state 'finished'
[2025-11-25 12:41:47] 2025-11-25 17:41:06,670 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:41:47] 2025-11-25 17:41:06,888 | INFO     | time since job start (81020s) is within the limit (172800.0s)
[2025-11-25 12:41:47] 2025-11-25 17:41:08,894 | INFO     | time since job start (81022s) is within the limit (172800.0s)
[2025-11-25 12:41:47] 2025-11-25 17:41:09,216 | INFO     | monitor loop #4798: job 0:6893876603 is in state 'finished'
[2025-11-25 12:41:47] 2025-11-25 17:41:09,217 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:41:47] 2025-11-25 17:41:10,280 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 12:41:47] 2025-11-25 17:41:10,291 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2811.349714285715
[2025-11-25 12:41:47] 2025-11-25 17:41:10,316 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893876603/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 12:41:47] 2025-11-25 17:41:10,317 | INFO     | extracted standard info from prmon json
[2025-11-25 12:41:47] 2025-11-25 17:41:10,326 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 12:41:47] 2025-11-25 17:41:10,326 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 12:41:47] 2025-11-25 17:41:10,383 | INFO     | fitting pss+swap vs Time
[2025-11-25 12:41:47] 2025-11-25 17:41:10,393 | INFO     | sum of square deviations: 724611257069.1307
[2025-11-25 12:41:47] 2025-11-25 17:41:10,474 | INFO     | sum of deviations: 3718482872973.4146
[2025-11-25 12:41:47] 2025-11-25 17:41:10,474 | INFO     | mean x: 1764051972.3880935
[2025-11-25 12:41:47] 2025-11-25 17:41:10,475 | INFO     | mean y: 3245087.760361718
[2025-11-25 12:41:47] 2025-11-25 17:41:10,475 | INFO     | intersect: -9049328940.542768
[2025-11-25 12:41:47] 2025-11-25 17:41:10,484 | INFO     | chi2: 17.7989818894829
[2025-11-25 12:41:47] 2025-11-25 17:41:10,486 | INFO     | sum of square deviations: 716454954493.4998
[2025-11-25 12:41:47] 2025-11-25 17:41:10,548 | INFO     | sum of deviations: 4249047056547.8516
[2025-11-25 12:41:47] 2025-11-25 17:41:10,548 | INFO     | mean x: 1764051819.9198184
[2025-11-25 12:41:47] 2025-11-25 17:41:10,553 | INFO     | mean y: 3255003.5363086234
[2025-11-25 12:41:47] 2025-11-25 17:41:10,553 | INFO     | intersect: -10458727492.386526
[2025-11-25 12:41:47] 2025-11-25 17:41:10,554 | INFO     | chi2: 14.115737505115758
[2025-11-25 12:41:47] 2025-11-25 17:41:10,555 | INFO     | current chi2=14.115737505115758 (change=20.693567796388983 %)
[2025-11-25 12:41:47] 2025-11-25 17:41:10,555 | INFO     | right removable region: 1321
[2025-11-25 12:41:47] 2025-11-25 17:41:10,556 | INFO     | sum of square deviations: 716448164583.501
[2025-11-25 12:41:47] 2025-11-25 17:41:10,682 | INFO     | sum of deviations: 3194089775315.165
[2025-11-25 12:41:47] 2025-11-25 17:41:10,683 | INFO     | mean x: 1764052124.9198184
[2025-11-25 12:41:47] 2025-11-25 17:41:10,683 | INFO     | mean y: 3254882.8600605144
[2025-11-25 12:41:47] 2025-11-25 17:41:10,683 | INFO     | intersect: -7861292943.296991
[2025-11-25 12:41:47] 2025-11-25 17:41:10,684 | INFO     | chi2: 14.709705879543463
[2025-11-25 12:41:47] 2025-11-25 17:41:10,684 | INFO     | current chi2=14.709705879543463 (change=17.356475944081016 %)
[2025-11-25 12:41:47] 2025-11-25 17:41:10,685 | INFO     | left removable region: 10
[2025-11-25 12:41:47] 2025-11-25 17:41:10,686 | INFO     | sum of square deviations: 698715470772.7878
[2025-11-25 12:41:47] 2025-11-25 17:41:10,716 | INFO     | sum of deviations: 3619771101598.384
[2025-11-25 12:41:47] 2025-11-25 17:41:10,717 | INFO     | mean x: 1764052094.4729214
[2025-11-25 12:41:47] 2025-11-25 17:41:10,717 | INFO     | mean y: 3270481.3348588864
[2025-11-25 12:41:47] 2025-11-25 17:41:10,717 | INFO     | intersect: -9135592275.23869
[2025-11-25 12:41:47] 2025-11-25 17:41:10,718 | INFO     | chi2: 10.042236677229134
[2025-11-25 12:41:47] 2025-11-25 17:41:10,719 | INFO     | current memory leak: 5.18 B/s (using 1311 data points, chi2=10.04)
[2025-11-25 12:41:47] 2025-11-25 17:41:10,720 | INFO     | could have reported an average CPU frequency of 2725 MHz (47 samples)
[2025-11-25 12:41:47] 2025-11-25 17:41:10,720 | INFO     | ..............................
[2025-11-25 12:41:47] 2025-11-25 17:41:10,720 | INFO     | . Timing measurements:
[2025-11-25 12:41:47] 2025-11-25 17:41:10,720 | INFO     | . get job = 0 s
[2025-11-25 12:41:47] 2025-11-25 17:41:10,720 | INFO     | . initial setup = 3 s
[2025-11-25 12:41:47] 2025-11-25 17:41:10,720 | INFO     | . payload setup = 20 s
[2025-11-25 12:41:47] 2025-11-25 17:41:10,720 | INFO     | . stage-in = 0 s
[2025-11-25 12:41:47] 2025-11-25 17:41:10,720 | INFO     | . payload execution = 80912 s
[2025-11-25 12:41:47] 2025-11-25 17:41:10,720 | INFO     | . stage-out = 10 s
[2025-11-25 12:41:47] 2025-11-25 17:41:10,720 | INFO     | . log creation = 3 s
[2025-11-25 12:41:47] 2025-11-25 17:41:10,721 | INFO     | ..............................
[2025-11-25 12:41:47] 2025-11-25 17:41:10,901 | INFO     | time since job start (81024s) is within the limit (172800.0s)
[2025-11-25 12:41:47] 2025-11-25 17:41:10,975 | INFO     | 
[2025-11-25 12:41:47] 2025-11-25 17:41:10,975 | INFO     | job summary report
[2025-11-25 12:41:47] 2025-11-25 17:41:10,975 | INFO     | --------------------------------------------------
[2025-11-25 12:41:47] 2025-11-25 17:41:10,976 | INFO     | PanDA job id: 6893876603
[2025-11-25 12:41:47] 2025-11-25 17:41:10,976 | INFO     | task id: 47523449
[2025-11-25 12:41:47] 2025-11-25 17:41:10,976 | INFO     | errors: (none)
[2025-11-25 12:41:47] 2025-11-25 17:41:10,976 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 12:41:47] 2025-11-25 17:41:10,976 | INFO     | pilot state: finished 
[2025-11-25 12:41:47] 2025-11-25 17:41:10,976 | INFO     | transexitcode: 0
[2025-11-25 12:41:47] 2025-11-25 17:41:10,976 | INFO     | exeerrorcode: 0
[2025-11-25 12:41:47] 2025-11-25 17:41:10,976 | INFO     | exeerrordiag: 
[2025-11-25 12:41:47] 2025-11-25 17:41:10,976 | INFO     | exitcode: 0
[2025-11-25 12:41:47] 2025-11-25 17:41:10,976 | INFO     | exitmsg: OK
[2025-11-25 12:41:47] 2025-11-25 17:41:10,984 | INFO     | cpuconsumptiontime: 249146 s
[2025-11-25 12:41:47] 2025-11-25 17:41:10,984 | INFO     | nevents: 1000
[2025-11-25 12:41:47] 2025-11-25 17:41:10,984 | INFO     | neventsw: 0
[2025-11-25 12:41:47] 2025-11-25 17:41:10,984 | INFO     | pid: 3213879
[2025-11-25 12:41:47] 2025-11-25 17:41:10,984 | INFO     | pgrp: 3213879
[2025-11-25 12:41:47] 2025-11-25 17:41:10,984 | INFO     | corecount: 10
[2025-11-25 12:41:47] 2025-11-25 17:41:10,984 | INFO     | event service: False
[2025-11-25 12:41:47] 2025-11-25 17:41:10,984 | INFO     | sizes: {0: 2284087, 1: 2284286, 2: 2284314, 13: 2284604, 24: 2284632, 80933: 2347554, 80934: 2347681, 80946: 2356736, 80949: 2356792, 80984: 2357038}
[2025-11-25 12:41:47] 2025-11-25 17:41:10,984 | INFO     | --------------------------------------------------
[2025-11-25 12:41:47] 2025-11-25 17:41:10,984 | INFO     | 
[2025-11-25 12:41:47] 2025-11-25 17:41:10,984 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 12:41:47] 2025-11-25 17:41:11,082 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:41:11,082 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:41:11,082 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:41:11,082 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:41:11,082 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:41:11,083 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:41:11,083 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:41:11,083 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:41:11,083 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:41:11,083 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:41:11,083 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:41:11,083 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:41:11,083 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:41:11,083 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:41:11,083 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:41:11,083 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:41:11,083 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:41:11,083 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 12:41:47] 2025-11-25 17:41:11,084 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:41:11,084 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:41:11,084 | INFO     | job 6893876603 has completed (purged errors)
[2025-11-25 12:41:47] 2025-11-25 17:41:11,084 | INFO     | overall cleanup function is called
[2025-11-25 12:41:47] 2025-11-25 17:41:12,121 | INFO     | --- collectZombieJob: --- 10, [3213879]
[2025-11-25 12:41:47] 2025-11-25 17:41:12,122 | INFO     | zombie collector waiting for pid 3213879
[2025-11-25 12:41:47] 2025-11-25 17:41:12,122 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 12:41:47] 2025-11-25 17:41:12,122 | INFO     | collected zombie processes
[2025-11-25 12:41:47] 2025-11-25 17:41:12,122 | INFO     | will attempt to kill all subprocesses of pid=3213879
[2025-11-25 12:41:47] 2025-11-25 17:41:13,013 | INFO     | process IDs to be killed: [3213879] (in reverse order)
[2025-11-25 12:41:47] 2025-11-25 17:41:13,191 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 12:41:47] 2025-11-25 17:41:13,191 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 12:41:47] 2025-11-25 17:41:13,241 | INFO     | did not find any defunct processes belonging to 3213879
[2025-11-25 12:41:47] 2025-11-25 17:41:13,259 | INFO     | did not find any defunct processes belonging to 3213879
[2025-11-25 12:41:47] 2025-11-25 17:41:13,263 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 12:41:47] 2025-11-25 17:41:13,264 | INFO     | ready for new job
[2025-11-25 12:41:47] 2025-11-25 17:41:13,264 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 12:41:47] 2025-11-25 17:41:13,274 | INFO     | ***************************************
[2025-11-25 12:41:47] 2025-11-25 17:41:13,274 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 12:41:47] 2025-11-25 17:41:13,274 | INFO     | ***************************************
[2025-11-25 12:41:47] 2025-11-25 17:41:13,274 | INFO     | 
[2025-11-25 12:41:47] 2025-11-25 17:41:13,282 | INFO     | architecture information:
[2025-11-25 12:41:47] 2025-11-25 17:41:13,286 | INFO     | executing command: cat /etc/os-release
[2025-11-25 12:41:47] 2025-11-25 17:41:13,433 | INFO     | cat /etc/os-release:
[2025-11-25 12:41:47] NAME="CentOS Linux"
[2025-11-25 12:41:47] VERSION="7 (Core)"
[2025-11-25 12:41:47] ID="centos"
[2025-11-25 12:41:47] ID_LIKE="rhel fedora"
[2025-11-25 12:41:47] VERSION_ID="7"
[2025-11-25 12:41:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 12:41:47] ANSI_COLOR="0;31"
[2025-11-25 12:41:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 12:41:47] HOME_URL="https://www.centos.org/"
[2025-11-25 12:41:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 12:41:47] 
[2025-11-25 12:41:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 12:41:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 12:41:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 12:41:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 12:41:47] 
[2025-11-25 12:41:47] 2025-11-25 17:41:13,433 | INFO     | ***************************************
[2025-11-25 12:41:47] 2025-11-25 17:41:13,937 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 12:41:47] 2025-11-25 17:41:13,980 | INFO     | sufficient remaining disk space (69310873600 B)
[2025-11-25 12:41:47] 2025-11-25 17:41:13,980 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 12:41:47] 2025-11-25 17:41:13,980 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 12:41:47] 2025-11-25 17:41:13,980 | INFO     | update_server=False
[2025-11-25 12:41:47] 2025-11-25 17:41:13,980 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 12:41:47] 2025-11-25 17:41:13,981 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 12:41:47] 2025-11-25 17:41:13,990 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 12:41:47] 2025-11-25 17:41:14,040 | INFO     | [monitor] cgroup control has ended
[2025-11-25 12:41:47] 2025-11-25 17:41:14,231 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 12:41:47] 2025-11-25 17:41:14,232 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 12:41:47] 2025-11-25 17:41:14,232 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:41:47] 2025-11-25 17:41:14,232 | INFO     | will abort loop
[2025-11-25 12:41:47] 2025-11-25 17:41:14,407 | INFO     | all data control threads have been joined
[2025-11-25 12:41:47] 2025-11-25 17:41:14,815 | INFO     | all payload control threads have been joined
[2025-11-25 12:41:47] 2025-11-25 17:41:14,990 | INFO     | [job] retrieve thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:41:15,230 | INFO     | all job control threads have been joined
[2025-11-25 12:41:47] 2025-11-25 17:41:15,255 | INFO     | [job] job monitor thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:41:15,267 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:41:15,316 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:41:15,316 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:41:15,414 | INFO     | [data] control thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:41:15,477 | INFO     | [payload] validate_post thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:41:15,477 | INFO     | [payload] failed_post thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:41:15,614 | INFO     | [job] validate thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:41:15,822 | INFO     | [payload] control thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:41:16,009 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:41:47] 2025-11-25 17:41:16,019 | INFO     | [data] copytool_out thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:41:16,238 | INFO     | [job] control thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:41:16,369 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:41:16,462 | INFO     | [data] copytool_in thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:41:17,051 | INFO     | [job] queue monitor thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:41:18,035 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:41:18,546 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139661181798208)>', '<ExcThread(monitor, started 139660307191552)>']
[2025-11-25 12:41:47] 2025-11-25 17:41:23,571 | INFO     | all workflow threads have been joined
[2025-11-25 12:41:47] 2025-11-25 17:41:23,572 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 12:41:47] 2025-11-25 17:41:23,572 | INFO     | traces error code: 0
[2025-11-25 12:41:47] 2025-11-25 17:41:23,572 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 12:41:47] 2025-11-25 17:41:45,381 | INFO     | PID=3201150 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 12:41:47] 2025-11-25 17:41:45,383 | INFO     | .. there are 11 such processes running
[2025-11-25 12:41:47] 2025-11-25 17:41:45,383 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 12:41:47] 2025-11-25 17:41:45,384 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 12:41:47] 2025-11-25 17:41:45,384 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 12:41:47] 2025-11-25 17:41:45,384 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 12:41:47] 2025-11-25 17:41:45,384 | CRITICAL | thread 'MainThread' is not alive
[2025-11-25 12:41:47] 2025-11-25 17:41:45,384 | INFO     | [monitor] control thread has ended
[2025-11-25 12:41:47] 2025-11-25 17:41:45,751 [wrapper] ==== pilot stdout END ====
[2025-11-25 12:41:47] 2025-11-25 17:41:45,773 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 12:41:47] 2025-11-25 17:41:45,789 [wrapper] pilotpid: 3201150
[2025-11-25 12:41:47] 2025-11-25 17:41:45,831 [wrapper] Pilot exit status: 0
[2025-11-25 12:41:47] 2025-11-25 17:41:45,937 [wrapper] pandaids: 6893876603 6893876603
[2025-11-25 12:41:47] 2025-11-25 17:41:46,130 [wrapper] cleanup supervisor_pilot 1132019 3201151
[2025-11-25 12:41:47] 2025-11-25 17:41:46,134 [wrapper] Test setup, not cleaning
[2025-11-25 12:41:47] 2025-11-25 17:41:46,146 [wrapper] apfmon messages muted
[2025-11-25 12:41:47] 2025-11-25 17:41:46,183 [wrapper] ==== wrapper stdout END ====
[2025-11-25 12:41:47] 2025-11-25 17:41:46,222 [wrapper] ==== wrapper stderr END ====
[2025-11-25 12:41:47]  *** Error codes and diagnostics ***
[2025-11-25 12:41:47]     "exeErrorCode": 0,
[2025-11-25 12:41:47]     "exeErrorDiag": "",
[2025-11-25 12:41:47]     "pilotErrorCode": 0,
[2025-11-25 12:41:47]     "pilotErrorDiag": "",
[2025-11-25 12:41:47]  *** Listing of results directory ***
[2025-11-25 12:41:47] total 1737100
[2025-11-25 12:41:47] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-25 12:41:47] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 12:21 pilot3.tar.gz
[2025-11-25 12:41:47] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 12:24 queuedata.json
[2025-11-25 12:41:47] -rwx------. 1 boincer umatlas     36292 Nov 20 12:24 runpilot2-wrapper.sh
[2025-11-25 12:41:47] -rw-r--r--. 1 boincer umatlas       100 Nov 22 18:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 12:41:47] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 18:49 run_atlas
[2025-11-25 12:41:47] -rw-r--r--. 1 boincer umatlas       105 Nov 22 18:49 job.xml
[2025-11-25 12:41:47] -rw-r--r--. 3 boincer umatlas 409008000 Nov 22 18:49 EVNT.47493127._000762.pool.root.1
[2025-11-25 12:41:47] -rw-r--r--. 3 boincer umatlas 409008000 Nov 22 18:49 ATLAS.root_0
[2025-11-25 12:41:47] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 18:49 start_atlas.sh
[2025-11-25 12:41:47] drwxrwx--x. 2 boincer umatlas      4096 Nov 22 18:49 shared
[2025-11-25 12:41:47] -rw-r--r--. 2 boincer umatlas    590098 Nov 22 18:49 input.tar.gz
[2025-11-25 12:41:47] -rw-r--r--. 1 boincer umatlas         0 Nov 22 18:49 boinc_lockfile
[2025-11-25 12:41:47] -rw-r--r--. 1 boincer umatlas      2784 Nov 24 14:10 pandaJob.out
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas        57 Nov 24 14:10 setup.sh.local
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas    991801 Nov 24 14:10 agis_schedconf.cvmfs.json
[2025-11-25 12:41:47] -rw-r--r--. 1 boincer umatlas       534 Nov 25 12:04 boinc_task_state.xml
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas 931372559 Nov 25 12:38 HITS.47523449._007618.pool.root.1
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas      1068 Nov 25 12:40 memory_monitor_summary.json
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas   1516240 Nov 25 12:40 agis_ddmendpoints.agis.ALL.json
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas   2604995 Nov 25 12:40 log.47523449._007618.job.log.tgz.1
[2025-11-25 12:41:47] -rw-r--r--. 1 boincer umatlas      6845 Nov 25 12:40 init_data.xml
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas      8658 Nov 25 12:41 heartbeat.json
[2025-11-25 12:41:47] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 12:41 boinc_mmap_file
[2025-11-25 12:41:47] -rw-r--r--. 1 boincer umatlas        30 Nov 25 12:41 wrapper_checkpoint.txt
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas        96 Nov 25 12:41 pilot_heartbeat.json
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas       893 Nov 25 12:41 pilotlog.txt
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas  10135635 Nov 25 12:41 log.47523449._007618.job.log.1
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas       353 Nov 25 12:41 output.list
[2025-11-25 12:41:47] -rw-r--r--. 1 boincer umatlas       620 Nov 25 12:41 runtime_log
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas  12759040 Nov 25 12:41 result.tar.gz
[2025-11-25 12:41:47] -rw-r--r--. 1 boincer umatlas      9440 Nov 25 12:41 runtime_log.err
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas       791 Nov 25 12:41 lM7LDmuZNg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMMIKDmSrOoqn.diag
[2025-11-25 12:41:47] -rw-r--r--. 1 boincer umatlas     24034 Nov 25 12:41 stderr.txt
[2025-11-25 12:41:47] HITS file was successfully produced:
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas 931372559 Nov 25 12:38 shared/HITS.pool.root.1
[2025-11-25 12:41:47]  *** Contents of shared directory: ***
[2025-11-25 12:41:47] total 1322032
[2025-11-25 12:41:47] -rw-r--r--. 3 boincer umatlas 409008000 Nov 22 18:49 ATLAS.root_0
[2025-11-25 12:41:47] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 18:49 start_atlas.sh
[2025-11-25 12:41:47] -rw-r--r--. 2 boincer umatlas    590098 Nov 22 18:49 input.tar.gz
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas 931372559 Nov 25 12:38 HITS.pool.root.1
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas  12759040 Nov 25 12:41 result.tar.gz
12:41:48 (3193800): run_atlas exited; CPU time 250105.378037
12:41:48 (3193800): called boinc_finish(0)

</stderr_txt>
]]>

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