Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:41:28 (2624120): wrapper (7.7.26015): starting
13:41:28 (2624120): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 13:41:28] Arguments: --nthreads 8
[2025-11-22 13:41:28] Threads: 8
[2025-11-22 13:41:28] Checking for CVMFS
[2025-11-22 13:41:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 13:41:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 13:41:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 13:41:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 13:41:29] 2.13.2.0 3557600 17461 179148 153181 0 470 36248543 40960001 25340 16776704 0 176394774 99.720 129289957 48576 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 13:41:29] CVMFS is ok
[2025-11-22 13:41:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 13:41:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 13:41:29] Further information can be found at the LHC@home message board.
[2025-11-22 13:41:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 13:41:29] Checking for apptainer binary...
[2025-11-22 13:41:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 13:41:29] Running /usr/bin/apptainer --version
[2025-11-22 13:41:29] apptainer version 1.4.4-1.el9
[2025-11-22 13:41:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 13:41:30] c-208-40.aglt2.org
[2025-11-22 13:41:30] apptainer works
[2025-11-22 13:41:30] Set ATHENA_PROC_NUMBER=8
[2025-11-22 13:41:30] Set ATHENA_CORE_NUMBER=8
[2025-11-22 13:41:30] Starting ATLAS job with PandaID=6894258272
[2025-11-22 13:41:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 23:21:20]  *** The last 200 lines of the pilot log: ***
[2025-11-22 23:21:20] 2025-11-23 04:20:02,430 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:21:20] 2025-11-23 04:20:03,965 | INFO     | time since job start (34672s) is within the limit (172800.0s)
[2025-11-22 23:21:20] 2025-11-23 04:20:04,941 | INFO     | monitor loop #2079: job 0:6894258272 is in state 'finished'
[2025-11-22 23:21:20] 2025-11-23 04:20:04,941 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:21:20] 2025-11-23 04:20:05,973 | INFO     | time since job start (34674s) is within the limit (172800.0s)
[2025-11-22 23:21:20] 2025-11-23 04:20:07,448 | INFO     | monitor loop #2080: job 0:6894258272 is in state 'finished'
[2025-11-22 23:21:20] 2025-11-23 04:20:07,449 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:21:20] 2025-11-23 04:20:07,980 | INFO     | time since job start (34676s) is within the limit (172800.0s)
[2025-11-22 23:21:20] 2025-11-23 04:20:09,968 | INFO     | monitor loop #2081: job 0:6894258272 is in state 'finished'
[2025-11-22 23:21:20] 2025-11-23 04:20:09,968 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:21:20] 2025-11-23 04:20:09,987 | INFO     | time since job start (34678s) is within the limit (172800.0s)
[2025-11-22 23:21:20] 2025-11-23 04:20:12,035 | INFO     | time since job start (34681s) is within the limit (172800.0s)
[2025-11-22 23:21:20] 2025-11-23 04:20:12,473 | INFO     | monitor loop #2082: job 0:6894258272 is in state 'finished'
[2025-11-22 23:21:20] 2025-11-23 04:20:12,473 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:21:20] 2025-11-23 04:20:14,048 | INFO     | time since job start (34683s) is within the limit (172800.0s)
[2025-11-22 23:21:20] 2025-11-23 04:20:14,978 | INFO     | monitor loop #2083: job 0:6894258272 is in state 'finished'
[2025-11-22 23:21:20] 2025-11-23 04:20:14,978 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:21:20] 2025-11-23 04:20:15,535 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-22 23:21:20] 2025-11-23 04:20:15,562 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9877421875
[2025-11-22 23:21:20] 2025-11-23 04:20:15,708 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894258272/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 23:21:20] 2025-11-23 04:20:15,709 | INFO     | extracted standard info from prmon json
[2025-11-22 23:21:20] 2025-11-23 04:20:15,709 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 23:21:20] 2025-11-23 04:20:15,709 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 23:21:20] 2025-11-23 04:20:15,721 | INFO     | fitting pss+swap vs Time
[2025-11-22 23:21:20] 2025-11-23 04:20:15,747 | INFO     | sum of square deviations: 56224099541.300476
[2025-11-22 23:21:20] 2025-11-23 04:20:15,758 | INFO     | sum of deviations: 3442812071763.3896
[2025-11-22 23:21:20] 2025-11-23 04:20:15,759 | INFO     | mean x: 1763854273.7385159
[2025-11-22 23:21:20] 2025-11-23 04:20:15,759 | INFO     | mean y: 3560098.867491166
[2025-11-22 23:21:20] 2025-11-23 04:20:15,759 | INFO     | intersect: -108003839503.81804
[2025-11-22 23:21:20] 2025-11-23 04:20:15,759 | INFO     | chi2: 61.368142519509654
[2025-11-22 23:21:20] 2025-11-23 04:20:15,760 | INFO     | sum of square deviations: 54747555933.52229
[2025-11-22 23:21:20] 2025-11-23 04:20:15,774 | INFO     | sum of deviations: 3686667617153.1665
[2025-11-22 23:21:20] 2025-11-23 04:20:15,775 | INFO     | mean x: 1763854121.258467
[2025-11-22 23:21:20] 2025-11-23 04:20:15,775 | INFO     | mean y: 3585281.7023172905
[2025-11-22 23:21:20] 2025-11-23 04:20:15,775 | INFO     | intersect: -118773294514.02335
[2025-11-22 23:21:20] 2025-11-23 04:20:15,775 | INFO     | chi2: 55.18356164708056
[2025-11-22 23:21:20] 2025-11-23 04:20:15,775 | INFO     | current chi2=55.18356164708056 (change=10.077836184243223 %)
[2025-11-22 23:21:20] 2025-11-23 04:20:15,775 | INFO     | right removable region: 560
[2025-11-22 23:21:20] 2025-11-23 04:20:15,780 | INFO     | sum of square deviations: 54746783063.52227
[2025-11-22 23:21:20] 2025-11-23 04:20:15,791 | INFO     | sum of deviations: 3157780634413.5483
[2025-11-22 23:21:20] 2025-11-23 04:20:15,792 | INFO     | mean x: 1763854426.258467
[2025-11-22 23:21:20] 2025-11-23 04:20:15,792 | INFO     | mean y: 3589519.568627451
[2025-11-22 23:21:20] 2025-11-23 04:20:15,792 | INFO     | intersect: -101735088764.0656
[2025-11-22 23:21:20] 2025-11-23 04:20:15,792 | INFO     | chi2: 57.89113006481736
[2025-11-22 23:21:20] 2025-11-23 04:20:15,792 | INFO     | current chi2=57.89113006481736 (change=5.665826456433662 %)
[2025-11-22 23:21:20] 2025-11-23 04:20:15,792 | INFO     | left removable region: 10
[2025-11-22 23:21:20] 2025-11-23 04:20:15,793 | INFO     | sum of square deviations: 51589135970.792694
[2025-11-22 23:21:20] 2025-11-23 04:20:15,798 | INFO     | sum of deviations: 3185356770375.5967
[2025-11-22 23:21:20] 2025-11-23 04:20:15,798 | INFO     | mean x: 1763854395.8036363
[2025-11-22 23:21:20] 2025-11-23 04:20:15,798 | INFO     | mean y: 3648780.098181818
[2025-11-22 23:21:20] 2025-11-23 04:20:15,798 | INFO     | intersect: -108905047516.16855
[2025-11-22 23:21:20] 2025-11-23 04:20:15,798 | INFO     | chi2: 47.677938254451135
[2025-11-22 23:21:20] 2025-11-23 04:20:15,798 | INFO     | current memory leak: 61.74 B/s (using 550 data points, chi2=47.68)
[2025-11-22 23:21:20] 2025-11-23 04:20:15,799 | INFO     | could have reported an average CPU frequency of 3796 MHz (22 samples)
[2025-11-22 23:21:20] 2025-11-23 04:20:15,799 | INFO     | ..............................
[2025-11-22 23:21:20] 2025-11-23 04:20:15,799 | INFO     | . Timing measurements:
[2025-11-22 23:21:20] 2025-11-23 04:20:15,799 | INFO     | . get job = 0 s
[2025-11-22 23:21:20] 2025-11-23 04:20:15,799 | INFO     | . initial setup = 4 s
[2025-11-22 23:21:20] 2025-11-23 04:20:15,799 | INFO     | . payload setup = 30 s
[2025-11-22 23:21:20] 2025-11-23 04:20:15,799 | INFO     | . stage-in = 0 s
[2025-11-22 23:21:20] 2025-11-23 04:20:15,799 | INFO     | . payload execution = 34540 s
[2025-11-22 23:21:20] 2025-11-23 04:20:15,799 | INFO     | . stage-out = 9 s
[2025-11-22 23:21:20] 2025-11-23 04:20:15,799 | INFO     | . log creation = 2 s
[2025-11-22 23:21:20] 2025-11-23 04:20:15,799 | INFO     | ..............................
[2025-11-22 23:21:20] 2025-11-23 04:20:15,928 | INFO     | 
[2025-11-22 23:21:20] 2025-11-23 04:20:15,929 | INFO     | job summary report
[2025-11-22 23:21:20] 2025-11-23 04:20:15,929 | INFO     | --------------------------------------------------
[2025-11-22 23:21:20] 2025-11-23 04:20:15,929 | INFO     | PanDA job id: 6894258272
[2025-11-22 23:21:20] 2025-11-23 04:20:15,929 | INFO     | task id: 47533967
[2025-11-22 23:21:20] 2025-11-23 04:20:15,929 | INFO     | errors: (none)
[2025-11-22 23:21:20] 2025-11-23 04:20:15,929 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 23:21:20] 2025-11-23 04:20:15,929 | INFO     | pilot state: finished 
[2025-11-22 23:21:20] 2025-11-23 04:20:15,929 | INFO     | transexitcode: 0
[2025-11-22 23:21:20] 2025-11-23 04:20:15,929 | INFO     | exeerrorcode: 0
[2025-11-22 23:21:20] 2025-11-23 04:20:15,929 | INFO     | exeerrordiag: 
[2025-11-22 23:21:20] 2025-11-23 04:20:15,929 | INFO     | exitcode: 0
[2025-11-22 23:21:20] 2025-11-23 04:20:15,929 | INFO     | exitmsg: OK
[2025-11-22 23:21:20] 2025-11-23 04:20:15,929 | INFO     | cpuconsumptiontime: 135833 s
[2025-11-22 23:21:20] 2025-11-23 04:20:15,929 | INFO     | nevents: 1000
[2025-11-22 23:21:20] 2025-11-23 04:20:15,929 | INFO     | neventsw: 0
[2025-11-22 23:21:20] 2025-11-23 04:20:15,929 | INFO     | pid: 2650328
[2025-11-22 23:21:20] 2025-11-23 04:20:15,929 | INFO     | pgrp: 2650328
[2025-11-22 23:21:20] 2025-11-23 04:20:15,929 | INFO     | corecount: 8
[2025-11-22 23:21:20] 2025-11-23 04:20:15,929 | INFO     | event service: False
[2025-11-22 23:21:20] 2025-11-23 04:20:15,929 | INFO     | sizes: {0: 2298585, 1: 2298784, 11: 2298784, 22: 2298812, 24: 2299102, 33: 2299130, 34576: 2340169, 34586: 2349191, 34590: 2349247, 34628: 2349493}
[2025-11-22 23:21:20] 2025-11-23 04:20:15,929 | INFO     | --------------------------------------------------
[2025-11-22 23:21:20] 2025-11-23 04:20:15,929 | INFO     | 
[2025-11-22 23:21:20] 2025-11-23 04:20:15,929 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 23:21:20] 2025-11-23 04:20:16,037 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 23:21:20] 2025-11-23 04:20:16,037 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 23:21:20] 2025-11-23 04:20:16,037 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 23:21:20] 2025-11-23 04:20:16,037 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 23:21:20] 2025-11-23 04:20:16,037 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 23:21:20] 2025-11-23 04:20:16,037 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 23:21:20] 2025-11-23 04:20:16,038 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 23:21:20] 2025-11-23 04:20:16,038 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 23:21:20] 2025-11-23 04:20:16,038 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 23:21:20] 2025-11-23 04:20:16,038 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 23:21:20] 2025-11-23 04:20:16,038 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 23:21:20] 2025-11-23 04:20:16,038 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 23:21:20] 2025-11-23 04:20:16,038 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 23:21:20] 2025-11-23 04:20:16,038 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 23:21:20] 2025-11-23 04:20:16,038 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 23:21:20] 2025-11-23 04:20:16,038 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 23:21:20] 2025-11-23 04:20:16,038 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 23:21:20] 2025-11-23 04:20:16,038 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 23:21:20] 2025-11-23 04:20:16,038 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 23:21:20] 2025-11-23 04:20:16,038 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 23:21:20] 2025-11-23 04:20:16,038 | INFO     | job 6894258272 has completed (purged errors)
[2025-11-22 23:21:20] 2025-11-23 04:20:16,038 | INFO     | overall cleanup function is called
[2025-11-22 23:21:20] 2025-11-23 04:20:17,090 | INFO     | --- collectZombieJob: --- 10, [2650328]
[2025-11-22 23:21:20] 2025-11-23 04:20:17,092 | INFO     | zombie collector waiting for pid 2650328
[2025-11-22 23:21:20] 2025-11-23 04:20:17,092 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 23:21:20] 2025-11-23 04:20:17,092 | INFO     | collected zombie processes
[2025-11-22 23:21:20] 2025-11-23 04:20:17,092 | INFO     | will attempt to kill all subprocesses of pid=2650328
[2025-11-22 23:21:20] 2025-11-23 04:20:19,195 | INFO     | process IDs to be killed: [2650328] (in reverse order)
[2025-11-22 23:21:20] 2025-11-23 04:20:19,504 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 23:21:20] 2025-11-23 04:20:19,505 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 23:21:20] 2025-11-23 04:20:19,615 | INFO     | did not find any defunct processes belonging to 2650328
[2025-11-22 23:21:20] 2025-11-23 04:20:19,731 | INFO     | did not find any defunct processes belonging to 2650328
[2025-11-22 23:21:20] 2025-11-23 04:20:19,744 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 23:21:20] 2025-11-23 04:20:19,744 | INFO     | ready for new job
[2025-11-22 23:21:20] 2025-11-23 04:20:19,744 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 23:21:20] 2025-11-23 04:20:19,750 | INFO     | ***************************************
[2025-11-22 23:21:20] 2025-11-23 04:20:19,750 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 23:21:20] 2025-11-23 04:20:19,750 | INFO     | ***************************************
[2025-11-22 23:21:20] 2025-11-23 04:20:19,750 | INFO     | 
[2025-11-22 23:21:20] 2025-11-23 04:20:19,791 | INFO     | architecture information:
[2025-11-22 23:21:20] 2025-11-23 04:20:19,853 | INFO     | executing command: cat /etc/os-release
[2025-11-22 23:21:20] 2025-11-23 04:20:19,951 | INFO     | cat /etc/os-release:
[2025-11-22 23:21:20] NAME="CentOS Linux"
[2025-11-22 23:21:20] VERSION="7 (Core)"
[2025-11-22 23:21:20] ID="centos"
[2025-11-22 23:21:20] ID_LIKE="rhel fedora"
[2025-11-22 23:21:20] VERSION_ID="7"
[2025-11-22 23:21:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 23:21:20] ANSI_COLOR="0;31"
[2025-11-22 23:21:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 23:21:20] HOME_URL="https://www.centos.org/"
[2025-11-22 23:21:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 23:21:20] 
[2025-11-22 23:21:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 23:21:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 23:21:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 23:21:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 23:21:20] 
[2025-11-22 23:21:20] 2025-11-23 04:20:19,951 | INFO     | ***************************************
[2025-11-22 23:21:20] 2025-11-23 04:20:20,471 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 23:21:20] 2025-11-23 04:20:20,678 | INFO     | sufficient remaining disk space (161923203072 B)
[2025-11-22 23:21:20] 2025-11-23 04:20:20,679 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 23:21:20] 2025-11-23 04:20:20,679 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 23:21:20] 2025-11-23 04:20:20,679 | INFO     | update_server=False
[2025-11-22 23:21:20] 2025-11-23 04:20:20,679 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 23:21:20] 2025-11-23 04:20:20,680 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 23:21:20] 2025-11-23 04:20:20,684 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 23:21:20] 2025-11-23 04:20:21,010 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:21:20] 2025-11-23 04:20:21,081 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:21:20] 2025-11-23 04:20:21,081 | INFO     | aborting loop
[2025-11-22 23:21:20] 2025-11-23 04:20:21,107 | INFO     | all data control threads have been joined
[2025-11-22 23:21:20] 2025-11-23 04:20:21,107 | INFO     | all job control threads have been joined
[2025-11-22 23:21:20] 2025-11-23 04:20:21,696 | INFO     | [job] retrieve thread has finished
[2025-11-22 23:21:20] 2025-11-23 04:20:21,721 | INFO     | [payload] failed_post thread has finished
[2025-11-22 23:21:20] 2025-11-23 04:20:21,792 | INFO     | [payload] validate_post thread has finished
[2025-11-22 23:21:20] 2025-11-23 04:20:21,931 | INFO     | all payload control threads have been joined
[2025-11-22 23:21:20] 2025-11-23 04:20:22,016 | INFO     | [job] queue monitor thread has finished
[2025-11-22 23:21:20] 2025-11-23 04:20:22,056 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 23:21:20] 2025-11-23 04:20:22,080 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 23:21:20] 2025-11-23 04:20:22,097 | INFO     | [job] job monitor thread has finished
[2025-11-22 23:21:20] 2025-11-23 04:20:22,113 | INFO     | [data] control thread has finished
[2025-11-22 23:21:20] 2025-11-23 04:20:22,113 | INFO     | [job] control thread has finished
[2025-11-22 23:21:20] 2025-11-23 04:20:22,343 | INFO     | [data] copytool_in thread has finished
[2025-11-22 23:21:20] 2025-11-23 04:20:22,686 | INFO     | [data] copytool_out thread has finished
[2025-11-22 23:21:20] 2025-11-23 04:20:22,821 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 23:21:20] 2025-11-23 04:20:22,937 | INFO     | [payload] control thread has finished
[2025-11-22 23:21:20] 2025-11-23 04:20:23,114 | INFO     | [job] validate thread has finished
[2025-11-22 23:21:20] 2025-11-23 04:20:23,114 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 23:21:20] 2025-11-23 04:20:24,712 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 23:21:20] 2025-11-23 04:20:51,388 | INFO     | PID=2630789 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 23:21:20] 2025-11-23 04:20:51,388 | INFO     | .. there are 44 such processes running
[2025-11-22 23:21:20] 2025-11-23 04:20:51,389 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 23:21:20] 2025-11-23 04:20:51,389 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 23:21:20] 2025-11-23 04:20:51,389 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 23:21:20] 2025-11-23 04:21:11,669 | INFO     | [monitor] cgroup control has ended
[2025-11-22 23:21:20] 2025-11-23 04:21:12,682 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140304358254400)>', '<ExcThread(monitor, started 140303881197312)>']
[2025-11-22 23:21:20] 2025-11-23 04:21:13,556 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 23:21:20] 2025-11-23 04:21:13,556 | INFO     | [monitor] control thread has ended
[2025-11-22 23:21:20] 2025-11-23 04:21:17,709 | INFO     | all workflow threads have been joined
[2025-11-22 23:21:20] 2025-11-23 04:21:17,709 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 23:21:20] 2025-11-23 04:21:17,713 | INFO     | traces error code: 0
[2025-11-22 23:21:20] 2025-11-23 04:21:17,713 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 23:21:20] 2025-11-23 04:21:19,197 [wrapper] ==== pilot stdout END ====
[2025-11-22 23:21:20] 2025-11-23 04:21:19,257 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 23:21:20] 2025-11-23 04:21:19,314 [wrapper] pilotpid: 2630789
[2025-11-22 23:21:20] 2025-11-23 04:21:19,458 [wrapper] Pilot exit status: 0
[2025-11-22 23:21:20] 2025-11-23 04:21:19,639 [wrapper] pandaids: 6894258272
[2025-11-22 23:21:20] 2025-11-23 04:21:19,965 [wrapper] cleanup supervisor_pilot 2597754 2630790
[2025-11-22 23:21:20] 2025-11-23 04:21:20,009 [wrapper] Test setup, not cleaning
[2025-11-22 23:21:20] 2025-11-23 04:21:20,058 [wrapper] apfmon messages muted
[2025-11-22 23:21:20] 2025-11-23 04:21:20,095 [wrapper] ==== wrapper stdout END ====
[2025-11-22 23:21:20] 2025-11-23 04:21:20,145 [wrapper] ==== wrapper stderr END ====
[2025-11-22 23:21:20]  *** Error codes and diagnostics ***
[2025-11-22 23:21:20]     "exeErrorCode": 0,
[2025-11-22 23:21:20]     "exeErrorDiag": "",
[2025-11-22 23:21:20]     "pilotErrorCode": 0,
[2025-11-22 23:21:20]     "pilotErrorDiag": "",
[2025-11-22 23:21:20]  *** Listing of results directory ***
[2025-11-22 23:21:20] total 1306540
[2025-11-22 23:21:20] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 22:09 pilot3.tar.gz
[2025-11-22 23:21:20] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 22:54 queuedata.json
[2025-11-22 23:21:20] -rwx------. 1 boincer umatlas     36292 Nov 20 22:55 runpilot2-wrapper.sh
[2025-11-22 23:21:20] -rw-r--r--. 1 boincer umatlas       100 Nov 22 13:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 23:21:20] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 13:41 run_atlas
[2025-11-22 23:21:20] -rw-r--r--. 1 boincer umatlas       105 Nov 22 13:41 job.xml
[2025-11-22 23:21:20] -rw-r--r--. 2 boincer umatlas 411176860 Nov 22 13:41 EVNT.47493127._002174.pool.root.1
[2025-11-22 23:21:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 13:41 start_atlas.sh
[2025-11-22 23:21:20] drwxrwx--x. 2 boincer umatlas      4096 Nov 22 13:41 shared
[2025-11-22 23:21:20] -rw-r--r--. 2 boincer umatlas    590107 Nov 22 13:41 input.tar.gz
[2025-11-22 23:21:20] -rw-r--r--. 1 boincer umatlas         0 Nov 22 13:41 boinc_lockfile
[2025-11-22 23:21:20] -rw-r--r--. 1 boincer umatlas      2785 Nov 22 13:41 pandaJob.out
[2025-11-22 23:21:20] -rw-------. 1 boincer umatlas        57 Nov 22 13:41 setup.sh.local
[2025-11-22 23:21:20] -rw-------. 1 boincer umatlas    989784 Nov 22 13:42 agis_schedconf.cvmfs.json
[2025-11-22 23:21:20] drwx------. 5 boincer umatlas      4096 Nov 22 13:42 pilot3
[2025-11-22 23:21:20] -rw-r--r--. 1 boincer umatlas       533 Nov 22 22:35 boinc_task_state.xml
[2025-11-22 23:21:20] -rw-------. 1 boincer umatlas 910427974 Nov 22 23:18 HITS.47533967._001452.pool.root.1
[2025-11-22 23:21:20] -rw-------. 1 boincer umatlas      1079 Nov 22 23:19 memory_monitor_summary.json
[2025-11-22 23:21:20] -rw-------. 1 boincer umatlas   1526164 Nov 22 23:19 agis_ddmendpoints.agis.ALL.json
[2025-11-22 23:21:20] -rw-------. 1 boincer umatlas   1809233 Nov 22 23:19 log.47533967._001452.job.log.tgz.1
[2025-11-22 23:21:20] -rw-r--r--. 1 boincer umatlas      7175 Nov 22 23:20 init_data.xml
[2025-11-22 23:21:20] -rw-------. 1 boincer umatlas      8663 Nov 22 23:20 heartbeat.json
[2025-11-22 23:21:20] -rw-------. 1 boincer umatlas        95 Nov 22 23:20 pilot_heartbeat.json
[2025-11-22 23:21:20] -rw-------. 1 boincer umatlas      4825 Nov 22 23:21 pilotlog.txt
[2025-11-22 23:21:20] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 23:21 boinc_mmap_file
[2025-11-22 23:21:20] -rw-r--r--. 1 boincer umatlas        29 Nov 22 23:21 wrapper_checkpoint.txt
[2025-11-22 23:21:20] -rw-------. 1 boincer umatlas   4372814 Nov 22 23:21 log.47533967._001452.job.log.1
[2025-11-22 23:21:20] -rw-------. 1 boincer umatlas       353 Nov 22 23:21 output.list
[2025-11-22 23:21:20] -rw-r--r--. 1 boincer umatlas       620 Nov 22 23:21 runtime_log
[2025-11-22 23:21:20] -rw-------. 1 boincer umatlas   6205440 Nov 22 23:21 result.tar.gz
[2025-11-22 23:21:20] -rw-------. 1 boincer umatlas       666 Nov 22 23:21 tyVMDmUQXg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmOIHKDmM6eMxm.diag
[2025-11-22 23:21:20] -rw-r--r--. 1 boincer umatlas      9343 Nov 22 23:21 runtime_log.err
[2025-11-22 23:21:20] -rw-r--r--. 1 boincer umatlas     21822 Nov 22 23:21 stderr.txt
[2025-11-22 23:21:20] HITS file was successfully produced:
[2025-11-22 23:21:20] -rw-------. 1 boincer umatlas 910427974 Nov 22 23:18 shared/HITS.pool.root.1
[2025-11-22 23:21:20]  *** Contents of shared directory: ***
[2025-11-22 23:21:20] total 1297296
[2025-11-22 23:21:20] -rw-r--r--. 2 boincer umatlas 411176860 Nov 22 13:41 ATLAS.root_0
[2025-11-22 23:21:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 13:41 start_atlas.sh
[2025-11-22 23:21:20] -rw-r--r--. 2 boincer umatlas    590107 Nov 22 13:41 input.tar.gz
[2025-11-22 23:21:20] -rw-------. 1 boincer umatlas 910427974 Nov 22 23:18 HITS.pool.root.1
[2025-11-22 23:21:20] -rw-------. 1 boincer umatlas   6205440 Nov 22 23:21 result.tar.gz
23:21:43 (2624120): run_atlas exited; CPU time 136248.326928
23:21:43 (2624120): called boinc_finish(0)

</stderr_txt>
]]>

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