Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:11:43 (2516549): wrapper (7.7.26015): starting
07:11:43 (2516549): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 07:11:43] Arguments: --nthreads 12
[2025-11-23 07:11:43] Threads: 12
[2025-11-23 07:11:43] Checking for CVMFS
[2025-11-23 07:11:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 07:11:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 07:11:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 07:11:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 07:11:44] 2.13.3.0 9060 21651 391972 153198 0 131 24612040 46080000 7301 130560 0 124246620 99.871 44919480 26072 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-11-23 07:11:44] CVMFS is ok
[2025-11-23 07:11:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 07:11:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 07:11:44] Further information can be found at the LHC@home message board.
[2025-11-23 07:11:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 07:11:44] Checking for apptainer binary...
[2025-11-23 07:11:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 07:11:44] Running /usr/bin/apptainer --version
[2025-11-23 07:11:44] apptainer version 1.4.3-1.el9
[2025-11-23 07:11:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 07:11:44] mff2104.farm.particle.cz
[2025-11-23 07:11:44] apptainer works
[2025-11-23 07:11:44] Set ATHENA_PROC_NUMBER=12
[2025-11-23 07:11:44] Set ATHENA_CORE_NUMBER=12
[2025-11-23 07:11:44] Starting ATLAS job with PandaID=6894290513
[2025-11-23 07:11:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 12:44:34]  *** The last 200 lines of the pilot log: ***
[2025-11-23 12:44:35] 2025-11-23 11:44:14,242 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 12:44:35] 2025-11-23 11:44:14,398 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 12:44:35] 2025-11-23 11:44:14,418 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2730.8854374999996
[2025-11-23 12:44:35] 2025-11-23 11:44:14,436 | INFO     | using path: /scratch/.boinc/slots/3/PanDA_Pilot-6894290513/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 12:44:35] 2025-11-23 11:44:14,437 | INFO     | extracted standard info from prmon json
[2025-11-23 12:44:35] 2025-11-23 11:44:14,437 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 12:44:35] 2025-11-23 11:44:14,437 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 12:44:35] 2025-11-23 11:44:14,444 | INFO     | fitting pss+swap vs Time
[2025-11-23 12:44:35] 2025-11-23 11:44:14,444 | INFO     | sum of square deviations: 10842120248.85026
[2025-11-23 12:44:35] 2025-11-23 11:44:14,447 | INFO     | sum of deviations: 209328430870.5291
[2025-11-23 12:44:35] 2025-11-23 11:44:14,447 | INFO     | mean x: 1763888289.9785933
[2025-11-23 12:44:35] 2025-11-23 11:44:14,447 | INFO     | mean y: 3429009.9327217126
[2025-11-23 12:44:35] 2025-11-23 11:44:14,448 | INFO     | intersect: -34051899606.37501
[2025-11-23 12:44:35] 2025-11-23 11:44:14,448 | INFO     | chi2: 5.92927815252443
[2025-11-23 12:44:35] 2025-11-23 11:44:14,449 | INFO     | sum of square deviations: 10352431916.487492
[2025-11-23 12:44:35] 2025-11-23 11:44:14,451 | INFO     | sum of deviations: 336514296672.2985
[2025-11-23 12:44:35] 2025-11-23 11:44:14,451 | INFO     | mean x: 1763888137.4937887
[2025-11-23 12:44:35] 2025-11-23 11:44:14,452 | INFO     | mean y: 3468564.149068323
[2025-11-23 12:44:35] 2025-11-23 11:44:14,452 | INFO     | intersect: -57333163136.07933
[2025-11-23 12:44:35] 2025-11-23 11:44:14,452 | INFO     | chi2: 2.8111818173320033
[2025-11-23 12:44:35] 2025-11-23 11:44:14,452 | INFO     | current chi2=2.8111818173320033 (change=52.588127171346756 %)
[2025-11-23 12:44:35] 2025-11-23 11:44:14,453 | INFO     | sum of square deviations: 9877662052.0
[2025-11-23 12:44:35] 2025-11-23 11:44:14,456 | INFO     | sum of deviations: 371678269275.99994
[2025-11-23 12:44:35] 2025-11-23 11:44:14,456 | INFO     | mean x: 1763887985.0
[2025-11-23 12:44:35] 2025-11-23 11:44:14,456 | INFO     | mean y: 3479768.239747634
[2025-11-23 12:44:35] 2025-11-23 11:44:14,456 | INFO     | intersect: -66368383331.570114
[2025-11-23 12:44:35] 2025-11-23 11:44:14,456 | INFO     | chi2: 2.2873766670125675
[2025-11-23 12:44:35] 2025-11-23 11:44:14,457 | INFO     | current chi2=2.2873766670125675 (change=18.63291613121493 %)
[2025-11-23 12:44:35] 2025-11-23 11:44:14,457 | INFO     | right removable region: 316
[2025-11-23 12:44:35] 2025-11-23 11:44:14,457 | INFO     | sum of square deviations: 10352276246.450352
[2025-11-23 12:44:35] 2025-11-23 11:44:14,460 | INFO     | sum of deviations: 108164433918.55902
[2025-11-23 12:44:35] 2025-11-23 11:44:14,460 | INFO     | mean x: 1763888442.4875777
[2025-11-23 12:44:35] 2025-11-23 11:44:14,460 | INFO     | mean y: 3460369.6397515526
[2025-11-23 12:44:35] 2025-11-23 11:44:14,460 | INFO     | intersect: -18426302354.53183
[2025-11-23 12:44:35] 2025-11-23 11:44:14,461 | INFO     | chi2: 3.8210934456200785
[2025-11-23 12:44:35] 2025-11-23 11:44:14,461 | INFO     | current chi2=3.8210934456200785 (change=35.55550359881122 %)
[2025-11-23 12:44:35] 2025-11-23 11:44:14,461 | INFO     | sum of square deviations: 9877468563.949482
[2025-11-23 12:44:35] 2025-11-23 11:44:14,464 | INFO     | sum of deviations: 79964314604.54567
[2025-11-23 12:44:35] 2025-11-23 11:44:14,464 | INFO     | mean x: 1763888594.9873817
[2025-11-23 12:44:35] 2025-11-23 11:44:14,464 | INFO     | mean y: 3469413.8864353313
[2025-11-23 12:44:35] 2025-11-23 11:44:14,464 | INFO     | intersect: -14276317114.793064
[2025-11-23 12:44:35] 2025-11-23 11:44:14,464 | INFO     | chi2: 3.741335168337322
[2025-11-23 12:44:35] 2025-11-23 11:44:14,465 | INFO     | current chi2=3.741335168337322 (change=2.087315539853627 %)
[2025-11-23 12:44:35] 2025-11-23 11:44:14,465 | INFO     | left removable region: 20
[2025-11-23 12:44:35] 2025-11-23 11:44:14,465 | INFO     | sum of square deviations: 8041704361.9695425
[2025-11-23 12:44:35] 2025-11-23 11:44:14,467 | INFO     | sum of deviations: 201114169478.18588
[2025-11-23 12:44:35] 2025-11-23 11:44:14,468 | INFO     | mean x: 1763888564.5101352
[2025-11-23 12:44:35] 2025-11-23 11:44:14,468 | INFO     | mean y: 3536373.1047297297
[2025-11-23 12:44:35] 2025-11-23 11:44:14,468 | INFO     | intersect: -44109373992.16056
[2025-11-23 12:44:35] 2025-11-23 11:44:14,468 | INFO     | chi2: 0.026503392245622814
[2025-11-23 12:44:35] 2025-11-23 11:44:14,468 | INFO     | current memory leak: 25.01 B/s (using 296 data points, chi2=0.03)
[2025-11-23 12:44:35] 2025-11-23 11:44:14,469 | INFO     | could have reported an average CPU frequency of 2722 MHz (14 samples)
[2025-11-23 12:44:35] 2025-11-23 11:44:14,469 | INFO     | ..............................
[2025-11-23 12:44:35] 2025-11-23 11:44:14,469 | INFO     | . Timing measurements:
[2025-11-23 12:44:35] 2025-11-23 11:44:14,469 | INFO     | . get job = 0 s
[2025-11-23 12:44:35] 2025-11-23 11:44:14,469 | INFO     | . initial setup = 1 s
[2025-11-23 12:44:35] 2025-11-23 11:44:14,469 | INFO     | . payload setup = 7 s
[2025-11-23 12:44:35] 2025-11-23 11:44:14,470 | INFO     | . stage-in = 0 s
[2025-11-23 12:44:35] 2025-11-23 11:44:14,470 | INFO     | . payload execution = 19897 s
[2025-11-23 12:44:35] 2025-11-23 11:44:14,470 | INFO     | . stage-out = 2 s
[2025-11-23 12:44:35] 2025-11-23 11:44:14,470 | INFO     | . log creation = 0 s
[2025-11-23 12:44:35] 2025-11-23 11:44:14,470 | INFO     | ..............................
[2025-11-23 12:44:35] 2025-11-23 11:44:14,589 | INFO     | time since job start (19938s) is within the limit (172800.0s)
[2025-11-23 12:44:35] 2025-11-23 11:44:14,818 | INFO     | 
[2025-11-23 12:44:35] 2025-11-23 11:44:14,818 | INFO     | job summary report
[2025-11-23 12:44:35] 2025-11-23 11:44:14,818 | INFO     | --------------------------------------------------
[2025-11-23 12:44:35] 2025-11-23 11:44:14,818 | INFO     | PanDA job id: 6894290513
[2025-11-23 12:44:35] 2025-11-23 11:44:14,818 | INFO     | task id: 47533967
[2025-11-23 12:44:35] 2025-11-23 11:44:14,818 | INFO     | errors: (none)
[2025-11-23 12:44:35] 2025-11-23 11:44:14,819 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 12:44:35] 2025-11-23 11:44:14,819 | INFO     | pilot state: finished 
[2025-11-23 12:44:35] 2025-11-23 11:44:14,819 | INFO     | transexitcode: 0
[2025-11-23 12:44:35] 2025-11-23 11:44:14,819 | INFO     | exeerrorcode: 0
[2025-11-23 12:44:35] 2025-11-23 11:44:14,819 | INFO     | exeerrordiag: 
[2025-11-23 12:44:35] 2025-11-23 11:44:14,819 | INFO     | exitcode: 0
[2025-11-23 12:44:35] 2025-11-23 11:44:14,819 | INFO     | exitmsg: OK
[2025-11-23 12:44:35] 2025-11-23 11:44:14,819 | INFO     | cpuconsumptiontime: 226847 s
[2025-11-23 12:44:35] 2025-11-23 11:44:14,819 | INFO     | nevents: 1000
[2025-11-23 12:44:35] 2025-11-23 11:44:14,819 | INFO     | neventsw: 0
[2025-11-23 12:44:35] 2025-11-23 11:44:14,819 | INFO     | pid: 2528863
[2025-11-23 12:44:35] 2025-11-23 11:44:14,819 | INFO     | pgrp: 2528863
[2025-11-23 12:44:35] 2025-11-23 11:44:14,820 | INFO     | corecount: 12
[2025-11-23 12:44:35] 2025-11-23 11:44:14,820 | INFO     | event service: False
[2025-11-23 12:44:35] 2025-11-23 11:44:14,820 | INFO     | sizes: {0: 2298751, 6: 2299013, 11: 2299041, 19908: 2333468, 19909: 2333467, 19911: 2342519, 19914: 2342703, 19922: 2342949}
[2025-11-23 12:44:35] 2025-11-23 11:44:14,820 | INFO     | --------------------------------------------------
[2025-11-23 12:44:35] 2025-11-23 11:44:14,820 | INFO     | 
[2025-11-23 12:44:35] 2025-11-23 11:44:14,820 | INFO     | executing command: ls -lF /scratch/.boinc/slots/3
[2025-11-23 12:44:35] 2025-11-23 11:44:14,846 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 12:44:35] 2025-11-23 11:44:14,847 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 12:44:35] 2025-11-23 11:44:14,847 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 12:44:35] 2025-11-23 11:44:14,847 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 12:44:35] 2025-11-23 11:44:14,847 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 12:44:35] 2025-11-23 11:44:14,847 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 12:44:35] 2025-11-23 11:44:14,847 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 12:44:35] 2025-11-23 11:44:14,847 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 12:44:35] 2025-11-23 11:44:14,847 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 12:44:35] 2025-11-23 11:44:14,847 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 12:44:35] 2025-11-23 11:44:14,847 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 12:44:35] 2025-11-23 11:44:14,848 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 12:44:35] 2025-11-23 11:44:14,848 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 12:44:35] 2025-11-23 11:44:14,848 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 12:44:35] 2025-11-23 11:44:14,848 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 12:44:35] 2025-11-23 11:44:14,848 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 12:44:35] 2025-11-23 11:44:14,848 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 12:44:35] 2025-11-23 11:44:14,848 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 12:44:35] 2025-11-23 11:44:14,848 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 12:44:35] 2025-11-23 11:44:14,848 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 12:44:35] 2025-11-23 11:44:14,848 | INFO     | job 6894290513 has completed (purged errors)
[2025-11-23 12:44:35] 2025-11-23 11:44:14,848 | INFO     | overall cleanup function is called
[2025-11-23 12:44:35] 2025-11-23 11:44:15,870 | INFO     | --- collectZombieJob: --- 10, [2528863]
[2025-11-23 12:44:35] 2025-11-23 11:44:15,871 | INFO     | zombie collector waiting for pid 2528863
[2025-11-23 12:44:35] 2025-11-23 11:44:15,871 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 12:44:35] 2025-11-23 11:44:15,871 | INFO     | collected zombie processes
[2025-11-23 12:44:35] 2025-11-23 11:44:15,871 | INFO     | will attempt to kill all subprocesses of pid=2528863
[2025-11-23 12:44:35] 2025-11-23 11:44:16,373 | INFO     | PID=2520718 has CPU usage=17.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-23 12:44:35] 2025-11-23 11:44:16,374 | INFO     | .. there are 8 such processes running
[2025-11-23 12:44:35] 2025-11-23 11:44:16,571 | INFO     | process IDs to be killed: [2528863] (in reverse order)
[2025-11-23 12:44:35] 2025-11-23 11:44:16,706 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 12:44:35] 2025-11-23 11:44:16,707 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 12:44:35] 2025-11-23 11:44:16,721 | INFO     | did not find any defunct processes belonging to 2528863
[2025-11-23 12:44:35] 2025-11-23 11:44:16,733 | INFO     | did not find any defunct processes belonging to 2528863
[2025-11-23 12:44:35] 2025-11-23 11:44:16,735 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 12:44:35] 2025-11-23 11:44:16,735 | INFO     | ready for new job
[2025-11-23 12:44:35] 2025-11-23 11:44:16,735 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 12:44:35] 2025-11-23 11:44:16,738 | INFO     | ***************************************
[2025-11-23 12:44:35] 2025-11-23 11:44:16,738 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 12:44:35] 2025-11-23 11:44:16,738 | INFO     | ***************************************
[2025-11-23 12:44:35] 2025-11-23 11:44:16,739 | INFO     | 
[2025-11-23 12:44:35] 2025-11-23 11:44:16,745 | INFO     | architecture information:
[2025-11-23 12:44:35] 2025-11-23 11:44:16,746 | INFO     | executing command: cat /etc/os-release
[2025-11-23 12:44:35] 2025-11-23 11:44:16,767 | INFO     | cat /etc/os-release:
[2025-11-23 12:44:35] NAME="CentOS Linux"
[2025-11-23 12:44:35] VERSION="7 (Core)"
[2025-11-23 12:44:35] ID="centos"
[2025-11-23 12:44:35] ID_LIKE="rhel fedora"
[2025-11-23 12:44:35] VERSION_ID="7"
[2025-11-23 12:44:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 12:44:35] ANSI_COLOR="0;31"
[2025-11-23 12:44:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 12:44:35] HOME_URL="https://www.centos.org/"
[2025-11-23 12:44:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 12:44:35] 
[2025-11-23 12:44:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 12:44:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 12:44:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 12:44:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 12:44:35] 
[2025-11-23 12:44:35] 2025-11-23 11:44:16,767 | INFO     | ***************************************
[2025-11-23 12:44:35] 2025-11-23 11:44:17,271 | INFO     | executing command: df -mP /scratch/.boinc/slots/3
[2025-11-23 12:44:35] 2025-11-23 11:44:17,295 | INFO     | sufficient remaining disk space (1674559094784 B)
[2025-11-23 12:44:35] 2025-11-23 11:44:17,295 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 12:44:35] 2025-11-23 11:44:17,296 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 12:44:35] 2025-11-23 11:44:17,296 | INFO     | update_server=False
[2025-11-23 12:44:35] 2025-11-23 11:44:17,296 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 12:44:35] 2025-11-23 11:44:17,296 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 12:44:35] 2025-11-23 11:44:17,297 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-23 12:44:35] 2025-11-23 11:44:17,297 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 12:44:35] 2025-11-23 11:44:17,297 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 12:44:35] 2025-11-23 11:44:17,297 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 12:44:35] 2025-11-23 11:44:17,297 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 12:44:35] 2025-11-23 11:44:17,482 | INFO     | all job control threads have been joined
[2025-11-23 12:44:35] 2025-11-23 11:44:17,751 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 12:44:35] 2025-11-23 11:44:17,751 | INFO     | aborting loop
[2025-11-23 12:44:35] 2025-11-23 11:44:17,955 | INFO     | all data control threads have been joined
[2025-11-23 12:44:35] 2025-11-23 11:44:18,298 | INFO     | [job] retrieve thread has finished
[2025-11-23 12:44:35] 2025-11-23 11:44:18,333 | INFO     | [payload] validate_post thread has finished
[2025-11-23 12:44:35] 2025-11-23 11:44:18,488 | INFO     | [job] control thread has finished
[2025-11-23 12:44:35] 2025-11-23 11:44:18,587 | INFO     | all payload control threads have been joined
[2025-11-23 12:44:35] 2025-11-23 11:44:18,757 | INFO     | [job] job monitor thread has finished
[2025-11-23 12:44:35] 2025-11-23 11:44:18,960 | INFO     | [data] control thread has finished
[2025-11-23 12:44:35] 2025-11-23 11:44:18,994 | INFO     | [data] copytool_in thread has finished
[2025-11-23 12:44:35] 2025-11-23 11:44:19,210 | INFO     | [job] validate thread has finished
[2025-11-23 12:44:35] 2025-11-23 11:44:19,303 | INFO     | [data] copytool_out thread has finished
[2025-11-23 12:44:35] 2025-11-23 11:44:19,435 | INFO     | [payload] failed_post thread has finished
[2025-11-23 12:44:35] 2025-11-23 11:44:19,573 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 12:44:35] 2025-11-23 11:44:19,593 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 12:44:35] 2025-11-23 11:44:19,594 | INFO     | [payload] control thread has finished
[2025-11-23 12:44:35] 2025-11-23 11:44:19,714 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 12:44:35] 2025-11-23 11:44:19,714 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 12:44:35] 2025-11-23 11:44:19,782 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 12:44:35] 2025-11-23 11:44:20,579 | INFO     | [job] queue monitor thread has finished
[2025-11-23 12:44:35] 2025-11-23 11:44:21,304 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 12:44:35] 2025-11-23 11:44:28,545 | INFO     | [monitor] cgroup control has ended
[2025-11-23 12:44:35] 2025-11-23 11:44:29,551 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139881492936512)>', '<ExcThread(monitor, started 139881145677568)>']
[2025-11-23 12:44:35] 2025-11-23 11:44:30,351 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 12:44:35] 2025-11-23 11:44:30,351 | INFO     | [monitor] control thread has ended
[2025-11-23 12:44:35] 2025-11-23 11:44:34,576 | INFO     | all workflow threads have been joined
[2025-11-23 12:44:35] 2025-11-23 11:44:34,576 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 12:44:35] 2025-11-23 11:44:34,577 | INFO     | traces error code: 0
[2025-11-23 12:44:35] 2025-11-23 11:44:34,577 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 12:44:35] 2025-11-23 11:44:34,741 [wrapper] ==== pilot stdout END ====
[2025-11-23 12:44:35] 2025-11-23 11:44:34,745 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 12:44:35] 2025-11-23 11:44:34,749 [wrapper] pilotpid: 2520718
[2025-11-23 12:44:35] 2025-11-23 11:44:34,753 [wrapper] Pilot exit status: 0
[2025-11-23 12:44:35] 2025-11-23 11:44:34,767 [wrapper] pandaids: 6894290513
[2025-11-23 12:44:35] 2025-11-23 11:44:34,890 [wrapper] cleanup supervisor_pilot 3007399 2520719
[2025-11-23 12:44:35] 2025-11-23 11:44:34,895 [wrapper] Test setup, not cleaning
[2025-11-23 12:44:35] 2025-11-23 11:44:34,899 [wrapper] apfmon messages muted
[2025-11-23 12:44:35] 2025-11-23 11:44:34,903 [wrapper] ==== wrapper stdout END ====
[2025-11-23 12:44:35] 2025-11-23 11:44:34,907 [wrapper] ==== wrapper stderr END ====
[2025-11-23 12:44:35]  *** Error codes and diagnostics ***
[2025-11-23 12:44:35]     "exeErrorCode": 0,
[2025-11-23 12:44:35]     "exeErrorDiag": "",
[2025-11-23 12:44:35]     "pilotErrorCode": 0,
[2025-11-23 12:44:35]     "pilotErrorDiag": "",
[2025-11-23 12:44:35]  *** Listing of results directory ***
[2025-11-23 12:44:35] total 1301616
[2025-11-23 12:44:35] -rw-r--r-- 1 boinc boinc    576529 Nov 21 12:32 pilot3.tar.gz
[2025-11-23 12:44:35] -rw-r--r-- 1 boinc boinc      5112 Nov 21 12:39 queuedata.json
[2025-11-23 12:44:35] -rwx------ 1 boinc boinc     36292 Nov 21 12:39 runpilot2-wrapper.sh
[2025-11-23 12:44:35] -rw-r--r-- 1 boinc boinc       100 Nov 23 07:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 12:44:35] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 07:11 run_atlas
[2025-11-23 12:44:35] -rw-r--r-- 1 boinc boinc       105 Nov 23 07:11 job.xml
[2025-11-23 12:44:35] -rw-r--r-- 2 boinc boinc 408757957 Nov 23 07:11 EVNT.47493127._002421.pool.root.1
[2025-11-23 12:44:35] -rw-r--r-- 1 boinc boinc      6665 Nov 23 07:11 init_data.xml
[2025-11-23 12:44:35] -rw-r--r-- 2 boinc boinc     15847 Nov 23 07:11 start_atlas.sh
[2025-11-23 12:44:35] drwxrwx--x 2 boinc boinc      4096 Nov 23 07:11 shared
[2025-11-23 12:44:35] -rw-r--r-- 2 boinc boinc    590103 Nov 23 07:11 input.tar.gz
[2025-11-23 12:44:35] -rw-r--r-- 1 boinc boinc         0 Nov 23 07:11 boinc_lockfile
[2025-11-23 12:44:35] -rw-r--r-- 1 boinc boinc      2782 Nov 23 07:11 pandaJob.out
[2025-11-23 12:44:35] -rw------- 1 boinc boinc    989784 Nov 23 07:11 agis_schedconf.cvmfs.json
[2025-11-23 12:44:35] drwx------ 5 boinc boinc      4096 Nov 23 07:11 pilot3
[2025-11-23 12:44:35] -rw-r--r-- 1 boinc boinc       533 Nov 23 12:35 boinc_task_state.xml
[2025-11-23 12:44:35] -rw------- 1 boinc boinc 910439485 Nov 23 12:43 HITS.47533967._003921.pool.root.1
[2025-11-23 12:44:35] -rw------- 1 boinc boinc      1034 Nov 23 12:43 memory_monitor_summary.json
[2025-11-23 12:44:35] -rw------- 1 boinc boinc   1526164 Nov 23 12:44 agis_ddmendpoints.agis.ALL.json
[2025-11-23 12:44:35] -rw------- 1 boinc boinc   2078623 Nov 23 12:44 log.47533967._003921.job.log.tgz.1
[2025-11-23 12:44:35] -rw------- 1 boinc boinc        95 Nov 23 12:44 pilot_heartbeat.json
[2025-11-23 12:44:35] -rw------- 1 boinc boinc      8595 Nov 23 12:44 heartbeat.json
[2025-11-23 12:44:35] -rw-r--r-- 1 boinc boinc        29 Nov 23 12:44 wrapper_checkpoint.txt
[2025-11-23 12:44:35] -rw------- 1 boinc boinc      4555 Nov 23 12:44 pilotlog.txt
[2025-11-23 12:44:35] -rw------- 1 boinc boinc   2786099 Nov 23 12:44 log.47533967._003921.job.log.1
[2025-11-23 12:44:35] -rw------- 1 boinc boinc       353 Nov 23 12:44 output.list
[2025-11-23 12:44:35] -rw-r--r-- 1 boinc boinc      8192 Nov 23 12:44 boinc_mmap_file
[2025-11-23 12:44:35] -rw-r--r-- 1 boinc boinc       620 Nov 23 12:44 runtime_log
[2025-11-23 12:44:35] -rw------- 1 boinc boinc   4884480 Nov 23 12:44 result.tar.gz
[2025-11-23 12:44:35] -rw-r--r-- 1 boinc boinc      8881 Nov 23 12:44 runtime_log.err
[2025-11-23 12:44:35] -rw------- 1 boinc boinc       671 Nov 23 12:44 KSrKDmjfeg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmBaHKDmJdS78n.diag
[2025-11-23 12:44:35] -rw-r--r-- 1 boinc boinc     21386 Nov 23 12:44 stderr.txt
[2025-11-23 12:44:35] HITS file was successfully produced:
[2025-11-23 12:44:35] -rw------- 1 boinc boinc 910439485 Nov 23 12:43 shared/HITS.pool.root.1
[2025-11-23 12:44:35]  *** Contents of shared directory: ***
[2025-11-23 12:44:35] total 1293660
[2025-11-23 12:44:35] -rw-r--r-- 2 boinc boinc 408757957 Nov 23 07:11 ATLAS.root_0
[2025-11-23 12:44:35] -rw-r--r-- 2 boinc boinc     15847 Nov 23 07:11 start_atlas.sh
[2025-11-23 12:44:35] -rw-r--r-- 2 boinc boinc    590103 Nov 23 07:11 input.tar.gz
[2025-11-23 12:44:35] -rw------- 1 boinc boinc 910439485 Nov 23 12:43 HITS.pool.root.1
[2025-11-23 12:44:35] -rw------- 1 boinc boinc   4884480 Nov 23 12:44 result.tar.gz
12:44:36 (2516549): run_atlas exited; CPU time 226857.763292
12:44:36 (2516549): called boinc_finish(0)

</stderr_txt>
]]>

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