Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:13:24 (1668070): wrapper (7.7.26015): starting
23:13:24 (1668070): wrapper: running run_atlas (--nthreads 3)
[2025-11-22 23:13:24] Arguments: --nthreads 3
[2025-11-22 23:13:24] Threads: 3
[2025-11-22 23:13:24] Checking for CVMFS
[2025-11-22 23:13:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 23:13:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 23:13:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 23:13:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 23:13:24] 2.9.2.0 1027257 582 69096 153186 3 9 34742352 36864001 0 130560 0 1880191 99.998 22136 17199 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-22 23:13:24] CVMFS is ok
[2025-11-22 23:13:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 23:13:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 23:13:24] Further information can be found at the LHC@home message board.
[2025-11-22 23:13:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 23:13:24] Checking for apptainer binary...
[2025-11-22 23:13:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 23:13:24] Running /usr/bin/apptainer --version
[2025-11-22 23:13:24] apptainer version 1.4.1-1.1
[2025-11-22 23:13:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 23:13:24] thA335
[2025-11-22 23:13:24] apptainer works
[2025-11-22 23:13:24] Set ATHENA_PROC_NUMBER=3
[2025-11-22 23:13:24] Set ATHENA_CORE_NUMBER=3
[2025-11-22 23:13:24] Starting ATLAS job with PandaID=6895330406
[2025-11-22 23:13:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 23:17:41]  *** The last 200 lines of the pilot log: ***
[2025-11-22 23:17:41] 2025-11-22 22:16:53,463 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 23:17:41] 2025-11-22 22:16:53,463 | INFO     | update_server=False
[2025-11-22 23:17:41] 2025-11-22 22:16:53,463 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 23:17:41] 2025-11-22 22:16:53,463 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:17:41] 2025-11-22 22:16:53,463 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:17:41] 2025-11-22 22:16:53,463 | INFO     | aborting loop
[2025-11-22 23:17:41] 2025-11-22 22:16:54,248 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 23:17:41] 2025-11-22 22:16:54,364 | INFO     | all job control threads have been joined
[2025-11-22 23:17:41] 2025-11-22 22:16:54,469 | INFO     | [job] queue monitor thread has finished
[2025-11-22 23:17:41] 2025-11-22 22:16:54,470 | INFO     | [job] job monitor thread has finished
[2025-11-22 23:17:41] 2025-11-22 22:16:54,471 | INFO     | [job] retrieve thread has finished
[2025-11-22 23:17:41] 2025-11-22 22:16:54,475 | INFO     | all data control threads have been joined
[2025-11-22 23:17:41] 2025-11-22 22:16:54,514 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 23:17:41] 2025-11-22 22:16:54,567 | INFO     | [data] copytool_in thread has finished
[2025-11-22 23:17:41] 2025-11-22 22:16:54,741 | INFO     | [payload] failed_post thread has finished
[2025-11-22 23:17:41] 2025-11-22 22:16:54,911 | INFO     | all payload control threads have been joined
[2025-11-22 23:17:41] 2025-11-22 22:16:55,254 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 23:17:41] 2025-11-22 22:16:55,371 | INFO     | [job] control thread has finished
[2025-11-22 23:17:41] 2025-11-22 22:16:55,481 | INFO     | [data] control thread has finished
[2025-11-22 23:17:41] 2025-11-22 22:16:55,628 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 23:17:41] 2025-11-22 22:16:55,803 | INFO     | [payload] validate_post thread has finished
[2025-11-22 23:17:41] 2025-11-22 22:16:55,875 | INFO     | [job] validate thread has finished
[2025-11-22 23:17:41] 2025-11-22 22:16:55,913 | INFO     | [payload] control thread has finished
[2025-11-22 23:17:41] 2025-11-22 22:16:55,958 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 23:17:41] 2025-11-22 22:16:56,254 | INFO     | [data] copytool_out thread has finished
[2025-11-22 23:17:41] 2025-11-22 22:16:56,593 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 23:17:41] 2025-11-22 22:17:00,600 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 23:17:41] 2025-11-22 22:17:23,568 | INFO     | PID=1671806 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 23:17:41] 2025-11-22 22:17:23,568 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 23:17:41] 2025-11-22 22:17:23,569 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 23:17:41] 2025-11-22 22:17:23,569 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 23:17:41] 2025-11-22 22:17:34,615 | INFO     | [monitor] cgroup control has ended
[2025-11-22 23:17:41] 2025-11-22 22:17:36,399 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140079072405312)>', '<ExcThread(monitor, started 140078571562752)>']
[2025-11-22 23:17:41] 2025-11-22 22:17:36,637 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 23:17:41] 2025-11-22 22:17:36,638 | INFO     | [monitor] control thread has ended
[2025-11-22 23:17:41] 2025-11-22 22:17:41,425 | INFO     | all workflow threads have been joined
[2025-11-22 23:17:41] 2025-11-22 22:17:41,426 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 23:17:41] 2025-11-22 22:17:41,426 | INFO     | traces error code: 0
[2025-11-22 23:17:41] 2025-11-22 22:17:41,427 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 23:17:41] 2025-11-22 22:17:41,478 [wrapper] ==== pilot stdout END ====
[2025-11-22 23:17:41] 2025-11-22 22:17:41,482 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 23:17:41] 2025-11-22 22:17:41,485 [wrapper] pilotpid: 1671806
[2025-11-22 23:17:41] 2025-11-22 22:17:41,488 [wrapper] Pilot exit status: 0
[2025-11-22 23:17:41] 2025-11-22 22:17:41,495 [wrapper] pandaids: 6895330406
[2025-11-22 23:17:41] 2025-11-22 22:17:41,510 [wrapper] cleanup supervisor_pilot 1671812 1671807
[2025-11-22 23:17:41] 2025-11-22 22:17:41,513 [wrapper] Test setup, not cleaning
[2025-11-22 23:17:41] 2025-11-22 22:17:41,515 [wrapper] apfmon messages muted
[2025-11-22 23:17:41] 2025-11-22 22:17:41,518 [wrapper] ==== wrapper stdout END ====
[2025-11-22 23:17:41] 2025-11-22 22:17:41,520 [wrapper] ==== wrapper stderr END ====
[2025-11-22 23:17:41]  *** Error codes and diagnostics ***
[2025-11-22 23:17:41]     "exeErrorCode": 65,
[2025-11-22 23:17:41]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-22 23:17:41]     "pilotErrorCode": 1305,
[2025-11-22 23:17:41]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-22 23:17:41]  *** Listing of results directory ***
[2025-11-22 23:17:41] total 405764
[2025-11-22 23:17:41] -rw-r--r-- 1 boinc boinc    576529 Nov 21 21:30 pilot3.tar.gz
[2025-11-22 23:17:41] -rwx------ 1 boinc boinc     36292 Nov 21 21:52 runpilot2-wrapper.sh
[2025-11-22 23:17:41] -rw-r--r-- 1 boinc boinc      5112 Nov 21 21:52 queuedata.json
[2025-11-22 23:17:41] -rw-r--r-- 1 boinc boinc       100 Nov 22 23:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 23:17:41] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 23:13 run_atlas
[2025-11-22 23:17:41] -rw-r--r-- 1 boinc boinc       105 Nov 22 23:13 job.xml
[2025-11-22 23:17:41] -rw-r--r-- 2 boinc boinc 411303277 Nov 22 23:13 EVNT.47483658._000136.pool.root.1
[2025-11-22 23:17:41] -rw-r--r-- 2 boinc boinc    590096 Nov 22 23:13 input.tar.gz
[2025-11-22 23:17:41] -rw-r--r-- 2 boinc boinc     15847 Nov 22 23:13 start_atlas.sh
[2025-11-22 23:17:41] drwxrwx--x 2 boinc boinc      4096 Nov 22 23:13 shared
[2025-11-22 23:17:41] -rw-r--r-- 1 boinc boinc         0 Nov 22 23:13 boinc_setup_complete
[2025-11-22 23:17:41] -rw-r--r-- 1 boinc boinc      6194 Nov 22 23:13 init_data.xml
[2025-11-22 23:17:41] -rw-r--r-- 1 boinc boinc         0 Nov 22 23:13 boinc_lockfile
[2025-11-22 23:17:41] -rw-r--r-- 1 boinc boinc      2786 Nov 22 23:13 pandaJob.out
[2025-11-22 23:17:41] -rw------- 1 boinc boinc    989768 Nov 22 23:13 agis_schedconf.cvmfs.json
[2025-11-22 23:17:41] -rw------- 1 boinc boinc   1526164 Nov 22 23:13 agis_ddmendpoints.agis.ALL.json
[2025-11-22 23:17:41] drwx------ 5 boinc boinc      4096 Nov 22 23:13 pilot3
[2025-11-22 23:17:41] -rw-r--r-- 1 boinc boinc       523 Nov 22 23:14 boinc_task_state.xml
[2025-11-22 23:17:41] -rw------- 1 boinc boinc       965 Nov 22 23:14 memory_monitor_summary.json
[2025-11-22 23:17:41] -rw------- 1 boinc boinc     55757 Nov 22 23:14 log.47556137._001357.job.log.tgz.1
[2025-11-22 23:17:41] -rw------- 1 boinc boinc        95 Nov 22 23:16 pilot_heartbeat.json
[2025-11-22 23:17:41] -rw------- 1 boinc boinc      8413 Nov 22 23:16 heartbeat.json
[2025-11-22 23:17:41] -rw-r--r-- 1 boinc boinc      8192 Nov 22 23:17 boinc_mmap_file
[2025-11-22 23:17:41] -rw-r--r-- 1 boinc boinc        22 Nov 22 23:17 wrapper_checkpoint.txt
[2025-11-22 23:17:41] -rw------- 1 boinc boinc      4752 Nov 22 23:17 pilotlog.txt
[2025-11-22 23:17:41] -rw------- 1 boinc boinc     93735 Nov 22 23:17 log.47556137._001357.job.log.1
[2025-11-22 23:17:41] -rw------- 1 boinc boinc       186 Nov 22 23:17 output.list
[2025-11-22 23:17:41] -rw-r--r-- 1 boinc boinc       620 Nov 22 23:17 runtime_log
[2025-11-22 23:17:41] -rw------- 1 boinc boinc    174080 Nov 22 23:17 result.tar.gz
[2025-11-22 23:17:41] -rw-r--r-- 1 boinc boinc      8744 Nov 22 23:17 runtime_log.err
[2025-11-22 23:17:41] -rw------- 1 boinc boinc       649 Nov 22 23:17 AljNDmfIng8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWoHKDmjwwx7n.diag
[2025-11-22 23:17:41] -rw-r--r-- 1 boinc boinc      7892 Nov 22 23:17 stderr.txt
[2025-11-22 23:17:41] No HITS result produced
[2025-11-22 23:17:41]  *** Contents of shared directory: ***
[2025-11-22 23:17:41] total 402436
[2025-11-22 23:17:41] -rw-r--r-- 2 boinc boinc 411303277 Nov 22 23:13 ATLAS.root_0
[2025-11-22 23:17:41] -rw-r--r-- 2 boinc boinc    590096 Nov 22 23:13 input.tar.gz
[2025-11-22 23:17:41] -rw-r--r-- 2 boinc boinc     15847 Nov 22 23:13 start_atlas.sh
[2025-11-22 23:17:41] -rw------- 1 boinc boinc    174080 Nov 22 23:17 result.tar.gz
23:17:43 (1668070): run_atlas exited; CPU time 31.645921
23:17:43 (1668070): called boinc_finish(0)

</stderr_txt>
]]>

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