Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-24 15:59:29 (22712): vboxwrapper version 26210
2025-11-24 15:59:29 (22712): BOINC client version: 8.2.4
2025-11-24 15:59:30 (22712): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-11-24 15:59:30 (22712): Successfully copied 'init_data.xml' to the shared directory.
2025-11-24 15:59:30 (22712): Create VM. (boinc_9f727467edd72cad, slot#0)
2025-11-24 15:59:31 (22712): Setting Memory Size for VM. (4800MB)
2025-11-24 15:59:31 (22712): Setting CPU Count for VM. (8)
2025-11-24 15:59:31 (22712): Setting Chipset Options for VM.
2025-11-24 15:59:32 (22712): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-24 15:59:32 (22712): Setting Boot Options for VM.
2025-11-24 15:59:33 (22712): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-24 15:59:33 (22712): Enabling VM Network Access.
2025-11-24 15:59:34 (22712): Disabling USB Support for VM.
2025-11-24 15:59:34 (22712): Disabling COM Port Support for VM.
2025-11-24 15:59:34 (22712): Disabling LPT Port Support for VM.
2025-11-24 15:59:34 (22712): Disabling Audio Support for VM.
2025-11-24 15:59:35 (22712): Disabling Clipboard Support for VM.
2025-11-24 15:59:35 (22712): Disabling Drag and Drop Support for VM.
2025-11-24 15:59:35 (22712): Adding storage controller(s) to VM.
2025-11-24 15:59:35 (22712): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-24 15:59:37 (22712): Adding VirtualBox Guest Additions to VM.
2025-11-24 15:59:37 (22712): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-24 15:59:37 (22712): forwarding host port 50109 to guest port 80
2025-11-24 15:59:37 (22712): Enabling remote desktop for VM.
2025-11-24 15:59:38 (22712): Required extension pack not installed, remote desktop not enabled.
2025-11-24 15:59:38 (22712): Enabling shared directory for VM.
2025-11-24 15:59:38 (22712): Starting VM using VBoxManage interface. (boinc_9f727467edd72cad, slot#0)
2025-11-24 15:59:42 (22712): Successfully started VM. (PID = '22236')
2025-11-24 15:59:42 (22712): Reporting VM Process ID to BOINC.
2025-11-24 15:59:42 (22712): Guest Log: BIOS: VirtualBox 6.1.50
2025-11-24 15:59:42 (22712): Guest Log: CPUID EDX: 0x178bfbff
2025-11-24 15:59:42 (22712): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-24 15:59:42 (22712): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-24 15:59:42 (22712): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-24 15:59:42 (22712): Detected: Web Application Enabled (http://localhost:50109)
2025-11-24 15:59:42 (22712): Preference change detected
2025-11-24 15:59:42 (22712): Setting CPU throttle for VM. (95%)
2025-11-24 15:59:42 (22712): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-24 15:59:44 (22712): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-24 15:59:44 (22712): Guest Log: BIOS: Booting from Hard Disk...
2025-11-24 15:59:47 (22712): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-24 15:59:47 (22712): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-24 15:59:47 (22712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-24 15:59:55 (22712): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-24 15:59:55 (22712): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-11-24 16:00:01 (22712): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-24 16:00:01 (22712): Guest Log: 00:00:00.000122 main     Log opened 2025-11-24T15:59:59.609447000Z
2025-11-24 16:00:01 (22712): Guest Log: 00:00:00.000190 main     OS Product: Linux
2025-11-24 16:00:01 (22712): Guest Log: 00:00:00.000218 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-24 16:00:01 (22712): Guest Log: 00:00:00.000239 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-24 16:00:01 (22712): Guest Log: 00:00:00.000260 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-24 16:00:01 (22712): Guest Log: 00:00:00.000261 main     Process ID: 1369
2025-11-24 16:00:01 (22712): Guest Log: 00:00:00.000261 main     Package type: LINUX_64BITS_GENERIC
2025-11-24 16:00:01 (22712): Guest Log: 00:00:00.000903 main     5.2.32 r132073 started. Verbose level = 0
2025-11-24 16:00:01 (22712): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-24 16:00:01 (22712): Guest Log: [INFO] Mounting shared directory
2025-11-24 16:00:01 (22712): Guest Log: [INFO] Checking for init_data.xml
2025-11-24 16:00:11 (22712): Guest Log: 00:00:10.004399 timesync vgsvcTimeSyncWorker: Radical guest time change: -39 589 264 651 000ns (GuestNow=1 763 960 410 346 447 000 ns GuestLast=1 763 999 999 611 098 000 ns fSetTimeLastLoop=true )
2025-11-24 16:02:57 (22712): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-24 16:02:57 (22712): Guest Log: [INFO] Detected branch: prod
2025-11-24 16:02:57 (22712): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-24 16:02:57 (22712): Guest Log: Copying input files
2025-11-24 16:03:00 (22712): Guest Log: Copied input files into RunAtlas.
2025-11-24 16:03:00 (22712): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-24 16:03:00 (22712): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-24 16:03:00 (22712): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-24 16:03:00 (22712): Guest Log: Further information can be found at the LHC@home message board.
2025-11-24 16:03:10 (22712): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-24 16:03:10 (22712): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-24 16:03:10 (22712): Guest Log: 2.6.3.0 1709 0 30184 153233 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-24 16:03:11 (22712): Guest Log: copied the webapp to /var/www
2025-11-24 16:03:11 (22712): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-24 16:03:11 (22712): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-24 16:03:11 (22712): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-24 16:03:11 (22712): Guest Log:  *** Starting ATLAS job. (PandaID=6894289837 taskID=47533967) ***
2025-11-24 17:39:48 (22712): Status Report: Elapsed Time: '6000.000000'
2025-11-24 17:39:48 (22712): Status Report: CPU Time: '39235.296707'
2025-11-24 19:21:37 (22712): Status Report: Elapsed Time: '12000.000000'
2025-11-24 19:21:37 (22712): Status Report: CPU Time: '86109.821982'
2025-11-24 21:01:44 (22712): Status Report: Elapsed Time: '18000.000000'
2025-11-24 21:01:44 (22712): Status Report: CPU Time: '133010.134224'
2025-11-24 22:41:52 (22712): Status Report: Elapsed Time: '24000.000000'
2025-11-24 22:41:52 (22712): Status Report: CPU Time: '179868.669397'
2025-11-25 00:21:59 (22712): Status Report: Elapsed Time: '30000.000000'
2025-11-25 00:21:59 (22712): Status Report: CPU Time: '226732.383803'
2025-11-25 02:02:07 (22712): Status Report: Elapsed Time: '36000.000000'
2025-11-25 02:02:07 (22712): Status Report: CPU Time: '273671.899096'
2025-11-25 03:21:34 (22712): Guest Log:  *** Job finished ***
2025-11-25 03:21:34 (22712): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-25 03:21:34 (22712): Guest Log: 2025-11-24 16:19:51,901 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-25 03:21:34 (22712): Guest Log: 2025-11-24 16:19:55,912 [wrapper] supervise_pilot (15 min periods counter: 46)
2025-11-25 03:21:34 (22712): Guest Log: 2025-11-24 16:20:02,428 | INFO     | [monitor] cgroup control has ended
2025-11-25 03:21:34 (22712): Guest Log: 2025-11-24 16:20:03,423 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140194258511680)>', '<ExcThread(monitor, started 140193193502464)>']
2025-11-25 03:21:34 (22712): Guest Log: 2025-11-24 16:20:04,149 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-25 03:21:34 (22712): Guest Log: 2025-11-24 16:20:04,150 | INFO     | [monitor] control thread has ended
2025-11-25 03:21:34 (22712): Guest Log: 2025-11-24 16:20:08,437 | INFO     | all workflow threads have been joined
2025-11-25 03:21:34 (22712): Guest Log: 2025-11-24 16:20:08,438 | INFO     | end of generic workflow (traces error code: 0)
2025-11-25 03:21:34 (22712): Guest Log: 2025-11-24 16:20:08,439 | INFO     | traces error code: 0
2025-11-25 03:21:34 (22712): Guest Log: 2025-11-24 16:20:08,440 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-25 03:21:34 (22712): Guest Log: 2025-11-24 16:20:08,534 [wrapper] ==== pilot stdout END ====
2025-11-25 03:21:34 (22712): Guest Log: 2025-11-24 16:20:08,538 [wrapper] ==== wrapper stdout RESUME ====
2025-11-25 03:21:34 (22712): Guest Log: 2025-11-24 16:20:08,542 [wrapper] pilotpid: 6096
2025-11-25 03:21:34 (22712): Guest Log: 2025-11-24 16:20:08,546 [wrapper] Pilot exit status: 0
2025-11-25 03:21:34 (22712): Guest Log: 2025-11-24 16:20:08,559 [wrapper] pandaids: 6894289837
2025-11-25 03:21:34 (22712): Guest Log: 2025-11-24 16:20:08,589 [wrapper] cleanup supervisor_pilot 17811 6097
2025-11-25 03:21:34 (22712): Guest Log: 2025-11-24 16:20:08,597 [wrapper] Test setup, not cleaning
2025-11-25 03:21:34 (22712): Guest Log: 2025-11-24 16:20:08,601 [wrapper] apfmon messages muted
2025-11-25 03:21:34 (22712): Guest Log: 2025-11-24 16:20:08,605 [wrapper] ==== wrapper stdout END ====
2025-11-25 03:21:34 (22712): Guest Log: 2025-11-24 16:20:08,609 [wrapper] ==== wrapper stderr END ====
2025-11-25 03:21:34 (22712): Guest Log:  *** Error codes and diagnostics ***
2025-11-25 03:21:34 (22712): Guest Log:     "exeErrorCode": 0,
2025-11-25 03:21:34 (22712): Guest Log:     "exeErrorDiag": "",
2025-11-25 03:21:34 (22712): Guest Log:     "pilotErrorCode": 0,
2025-11-25 03:21:34 (22712): Guest Log:     "pilotErrorDiag": "",
2025-11-25 03:21:34 (22712): Guest Log:  *** Listing of results directory ***
2025-11-25 03:21:34 (22712): Guest Log: total 913444
2025-11-25 03:21:34 (22712): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 21 11:32 pilot3.tar.gz
2025-11-25 03:21:34 (22712): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 21 11:34 queuedata.json
2025-11-25 03:21:34 (22712): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 21 11:36 runpilot2-wrapper.sh
2025-11-25 03:21:34 (22712): Guest Log: -rwxr-xr-x. 1 atlas atlas      5835 Nov 24 05:02 init_data.xml
2025-11-25 03:21:34 (22712): Guest Log: -rwxr-xr-x. 1 atlas atlas    590103 Nov 24 05:02 input.tar.gz
2025-11-25 03:21:34 (22712): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 24 05:02 start_atlas.sh
2025-11-25 03:21:34 (22712): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 24 05:02 EVNT.47493127._002419.pool.root.1 -> /data/./ATLAS.root_0
2025-11-25 03:21:34 (22712): Guest Log: -rw-r--r--. 1 atlas atlas      2782 Nov 24 05:03 pandaJob.out
2025-11-25 03:21:34 (22712): Guest Log: -rw-------. 1 atlas atlas    989786 Nov 24 05:04 agis_schedconf.cvmfs.json
2025-11-25 03:21:34 (22712): Guest Log: drwx------. 5 atlas atlas      4096 Nov 24 05:04 pilot3
2025-11-25 03:21:34 (22712): Guest Log: -rw-------. 1 atlas atlas 917189049 Nov 24 16:18 HITS.47533967._003901.pool.root.1
2025-11-25 03:21:34 (22712): Guest Log: -rw-------. 1 atlas atlas      1041 Nov 24 16:18 memory_monitor_summary.json
2025-11-25 03:21:34 (22712): Guest Log: -rw-------. 1 atlas atlas   1516227 Nov 24 16:18 agis_ddmendpoints.agis.ALL.json
2025-11-25 03:21:34 (22712): Guest Log: -rw-------. 1 atlas atlas   1902626 Nov 24 16:18 log.47533967._003901.job.log.tgz.1
2025-11-25 03:21:34 (22712): Guest Log: -rw-------. 1 atlas atlas      8667 Nov 24 16:19 heartbeat.json
2025-11-25 03:21:34 (22712): Guest Log: -rw-------. 1 atlas atlas        96 Nov 24 16:19 pilot_heartbeat.json
2025-11-25 03:21:34 (22712): Guest Log: -rw-------. 1 atlas atlas      4991 Nov 24 16:20 pilotlog.txt
2025-11-25 03:21:34 (22712): Guest Log: -rw-------. 1 atlas atlas   5266211 Nov 24 16:20 log.47533967._003901.job.log.1
2025-11-25 03:21:34 (22712): Guest Log: -rw-------. 1 atlas atlas       353 Nov 24 16:20 output.list
2025-11-25 03:21:34 (22712): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 24 16:20 runtime_log
2025-11-25 03:21:34 (22712): Guest Log: -rw-------. 1 atlas atlas   7188480 Nov 24 16:20 result.tar.gz
2025-11-25 03:21:34 (22712): Guest Log: -rw-r--r--. 1 atlas atlas      8756 Nov 24 16:20 runtime_log.err
2025-11-25 03:21:34 (22712): Guest Log: -rw-------. 1 atlas atlas       663 Nov 24 16:20 rF9LDmjceg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNMJKDm3tpzdm.diag
2025-11-25 03:21:34 (22712): Guest Log: Looking for outputfile HITS.47533967._003901.pool.root.1
2025-11-25 03:21:34 (22712): Guest Log: HITS file was successfully produced
2025-11-25 03:21:34 (22712): Guest Log: -rw-------. 1 atlas atlas 917189049 Nov 24 16:18 /home/atlas/RunAtlas/HITS.47533967._003901.pool.root.1
2025-11-25 03:21:37 (22712): Guest Log: Successfully finished the ATLAS job!
2025-11-25 03:21:37 (22712): Guest Log: Copying the results back to the shared directory!
2025-11-25 03:21:37 (22712): Guest Log:  *** Contents of shared directory: ***
2025-11-25 03:21:37 (22712): Guest Log: total 1303820
2025-11-25 03:21:37 (22712): Guest Log: -rwxrwxrwx. 1 root root 410110213 Nov 24 04:59 ATLAS.root_0
2025-11-25 03:21:37 (22712): Guest Log: -rwxrwxrwx. 1 root root 917189049 Nov 24  2025 HITS.pool.root.1
2025-11-25 03:21:37 (22712): Guest Log: -rwxrwxrwx. 1 root root      5835 Nov 24 04:59 init_data.xml
2025-11-25 03:21:37 (22712): Guest Log: -rwxrwxrwx. 1 root root    590103 Nov 22 18:17 input.tar.gz
2025-11-25 03:21:37 (22712): Guest Log: -rwxrwxrwx. 1 root root   7188480 Nov 24  2025 result.tar.gz
2025-11-25 03:21:37 (22712): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 22 18:17 start_atlas.sh
2025-11-25 03:21:37 (22712): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-25 03:21:37 (22712): VM Completion File Detected.
2025-11-25 03:21:37 (22712): Powering off VM.
2025-11-25 03:21:38 (22712): Successfully stopped VM.
2025-11-25 03:21:38 (22712): Deregistering VM. (boinc_9f727467edd72cad, slot#0)
2025-11-25 03:21:38 (22712): Removing network bandwidth throttle group from VM.
2025-11-25 03:21:38 (22712): Removing VM from VirtualBox.
2025-11-25 03:21:44 (22712): called boinc_finish(0)

</stderr_txt>
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