Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:04:43 (17902): wrapper (7.7.26015): starting
13:04:43 (17902): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 13:04:43] Arguments: --nthreads 8
[2025-11-22 13:04:43] Threads: 8
[2025-11-22 13:04:43] Checking for CVMFS
[2025-11-22 13:04:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 13:04:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 13:04:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 13:04:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 13:04:44] 2.11.2.0 2913 67877 84628 153180 3 82 11113981 20275201 1 130560 0 20397817 99.901 3354336 30471 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 13:04:44] CVMFS is ok
[2025-11-22 13:04:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 13:04:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 13:04:44] Further information can be found at the LHC@home message board.
[2025-11-22 13:04:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 13:04:44] Checking for apptainer binary...
[2025-11-22 13:04:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 13:04:44] Running /usr/bin/apptainer --version
[2025-11-22 13:04:44] apptainer version 1.3.2-1.el7
[2025-11-22 13:04:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 13:04:45] c-115-15.aglt2.org
[2025-11-22 13:04:45] apptainer works
[2025-11-22 13:04:45] Set ATHENA_PROC_NUMBER=8
[2025-11-22 13:04:45] Set ATHENA_CORE_NUMBER=8
[2025-11-22 13:04:45] Starting ATLAS job with PandaID=6895330349
[2025-11-22 13:04:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 00:16:35]  *** The last 200 lines of the pilot log: ***
[2025-11-23 00:16:35] 2025-11-23 05:16:02,184 | INFO     | monitor loop #2960: job 0:6895330349 is in state 'finished'
[2025-11-23 00:16:35] 2025-11-23 05:16:02,184 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 00:16:35] 2025-11-23 05:16:02,377 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 00:16:35] 2025-11-23 05:16:02,381 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1712.375
[2025-11-23 00:16:35] 2025-11-23 05:16:02,384 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895330349/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 00:16:35] 2025-11-23 05:16:02,385 | INFO     | extracted standard info from prmon json
[2025-11-23 00:16:35] 2025-11-23 05:16:02,386 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 00:16:35] 2025-11-23 05:16:02,386 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 00:16:35] 2025-11-23 05:16:02,396 | INFO     | fitting pss+swap vs Time
[2025-11-23 00:16:35] 2025-11-23 05:16:02,397 | INFO     | sum of square deviations: 89147693511.05923
[2025-11-23 00:16:35] 2025-11-23 05:16:02,405 | INFO     | sum of deviations: 629135329660.2397
[2025-11-23 00:16:35] 2025-11-23 05:16:02,405 | INFO     | mean x: 1763854834.1227272
[2025-11-23 00:16:35] 2025-11-23 05:16:02,406 | INFO     | mean y: 3223299.243939394
[2025-11-23 00:16:35] 2025-11-23 05:16:02,406 | INFO     | intersect: -12444697099.29049
[2025-11-23 00:16:35] 2025-11-23 05:16:02,406 | INFO     | chi2: 6.413246865998349
[2025-11-23 00:16:35] 2025-11-23 05:16:02,407 | INFO     | sum of square deviations: 87137046279.1055
[2025-11-23 00:16:35] 2025-11-23 05:16:02,415 | INFO     | sum of deviations: 867480096529.3075
[2025-11-23 00:16:35] 2025-11-23 05:16:02,416 | INFO     | mean x: 1763854681.627481
[2025-11-23 00:16:35] 2025-11-23 05:16:02,416 | INFO     | mean y: 3241362.271755725
[2025-11-23 00:16:35] 2025-11-23 05:16:02,416 | INFO     | intersect: -17556555472.943916
[2025-11-23 00:16:35] 2025-11-23 05:16:02,417 | INFO     | chi2: 3.4347495280957476
[2025-11-23 00:16:35] 2025-11-23 05:16:02,417 | INFO     | current chi2=3.4347495280957476 (change=46.44289234668248 %)
[2025-11-23 00:16:35] 2025-11-23 05:16:02,417 | INFO     | sum of square deviations: 85156864734.62163
[2025-11-23 00:16:35] 2025-11-23 05:16:02,425 | INFO     | sum of deviations: 983854257501.0983
[2025-11-23 00:16:35] 2025-11-23 05:16:02,426 | INFO     | mean x: 1763854529.1323078
[2025-11-23 00:16:35] 2025-11-23 05:16:02,426 | INFO     | mean y: 3250314.8476923076
[2025-11-23 00:16:35] 2025-11-23 05:16:02,426 | INFO     | intersect: -20375327425.272846
[2025-11-23 00:16:35] 2025-11-23 05:16:02,426 | INFO     | chi2: 2.5997704361917604
[2025-11-23 00:16:35] 2025-11-23 05:16:02,427 | INFO     | current chi2=2.5997704361917604 (change=24.30975199425695 %)
[2025-11-23 00:16:35] 2025-11-23 05:16:02,427 | INFO     | right removable region: 649
[2025-11-23 00:16:35] 2025-11-23 05:16:02,427 | INFO     | sum of square deviations: 87136795569.10547
[2025-11-23 00:16:35] 2025-11-23 05:16:02,435 | INFO     | sum of deviations: 422124396933.25256
[2025-11-23 00:16:35] 2025-11-23 05:16:02,436 | INFO     | mean x: 1763854986.627481
[2025-11-23 00:16:35] 2025-11-23 05:16:02,436 | INFO     | mean y: 3238968.1526717558
[2025-11-23 00:16:35] 2025-11-23 05:16:02,436 | INFO     | intersect: -8541557953.112851
[2025-11-23 00:16:35] 2025-11-23 05:16:02,436 | INFO     | chi2: 4.004865891783345
[2025-11-23 00:16:35] 2025-11-23 05:16:02,437 | INFO     | current chi2=4.004865891783345 (change=37.553224201982935 %)
[2025-11-23 00:16:35] 2025-11-23 05:16:02,437 | INFO     | sum of square deviations: 85156403269.88475
[2025-11-23 00:16:35] 2025-11-23 05:16:02,445 | INFO     | sum of deviations: 385464305666.3994
[2025-11-23 00:16:35] 2025-11-23 05:16:02,445 | INFO     | mean x: 1763855139.1307693
[2025-11-23 00:16:35] 2025-11-23 05:16:02,446 | INFO     | mean y: 3241789.76
[2025-11-23 00:16:35] 2025-11-23 05:16:02,446 | INFO     | intersect: -7980928165.684767
[2025-11-23 00:16:35] 2025-11-23 05:16:02,446 | INFO     | chi2: 3.975256968068759
[2025-11-23 00:16:35] 2025-11-23 05:16:02,446 | INFO     | current chi2=3.975256968068759 (change=0.739323725554293 %)
[2025-11-23 00:16:35] 2025-11-23 05:16:02,447 | INFO     | left removable region: 20
[2025-11-23 00:16:35] 2025-11-23 05:16:02,447 | INFO     | sum of square deviations: 77166926647.35541
[2025-11-23 00:16:35] 2025-11-23 05:16:02,455 | INFO     | sum of deviations: 671133904384.3304
[2025-11-23 00:16:35] 2025-11-23 05:16:02,455 | INFO     | mean x: 1763855108.6375198
[2025-11-23 00:16:35] 2025-11-23 05:16:02,455 | INFO     | mean y: 3275318.545310016
[2025-11-23 00:16:35] 2025-11-23 05:16:02,455 | INFO     | intersect: -15337272987.050783
[2025-11-23 00:16:35] 2025-11-23 05:16:02,456 | INFO     | chi2: 0.08556636594140461
[2025-11-23 00:16:35] 2025-11-23 05:16:02,456 | INFO     | current memory leak: 8.70 B/s (using 629 data points, chi2=0.09)
[2025-11-23 00:16:35] 2025-11-23 05:16:02,456 | INFO     | could have reported an average CPU frequency of 2385 MHz (26 samples)
[2025-11-23 00:16:35] 2025-11-23 05:16:02,457 | INFO     | ..............................
[2025-11-23 00:16:35] 2025-11-23 05:16:02,457 | INFO     | . Timing measurements:
[2025-11-23 00:16:35] 2025-11-23 05:16:02,457 | INFO     | . get job = 0 s
[2025-11-23 00:16:35] 2025-11-23 05:16:02,457 | INFO     | . initial setup = 2 s
[2025-11-23 00:16:35] 2025-11-23 05:16:02,457 | INFO     | . payload setup = 8 s
[2025-11-23 00:16:35] 2025-11-23 05:16:02,457 | INFO     | . stage-in = 0 s
[2025-11-23 00:16:35] 2025-11-23 05:16:02,457 | INFO     | . payload execution = 40219 s
[2025-11-23 00:16:35] 2025-11-23 05:16:02,457 | INFO     | . stage-out = 3 s
[2025-11-23 00:16:35] 2025-11-23 05:16:02,457 | INFO     | . log creation = 0 s
[2025-11-23 00:16:35] 2025-11-23 05:16:02,458 | INFO     | ..............................
[2025-11-23 00:16:35] 2025-11-23 05:16:02,543 | INFO     | 
[2025-11-23 00:16:35] 2025-11-23 05:16:02,543 | INFO     | job summary report
[2025-11-23 00:16:35] 2025-11-23 05:16:02,543 | INFO     | --------------------------------------------------
[2025-11-23 00:16:35] 2025-11-23 05:16:02,543 | INFO     | PanDA job id: 6895330349
[2025-11-23 00:16:35] 2025-11-23 05:16:02,543 | INFO     | task id: 47556149
[2025-11-23 00:16:35] 2025-11-23 05:16:02,544 | INFO     | errors: (none)
[2025-11-23 00:16:35] 2025-11-23 05:16:02,544 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 00:16:35] 2025-11-23 05:16:02,544 | INFO     | pilot state: finished 
[2025-11-23 00:16:35] 2025-11-23 05:16:02,544 | INFO     | transexitcode: 0
[2025-11-23 00:16:35] 2025-11-23 05:16:02,544 | INFO     | exeerrorcode: 0
[2025-11-23 00:16:35] 2025-11-23 05:16:02,544 | INFO     | exeerrordiag: 
[2025-11-23 00:16:35] 2025-11-23 05:16:02,545 | INFO     | exitcode: 0
[2025-11-23 00:16:35] 2025-11-23 05:16:02,545 | INFO     | exitmsg: OK
[2025-11-23 00:16:35] 2025-11-23 05:16:02,545 | INFO     | cpuconsumptiontime: 312081 s
[2025-11-23 00:16:35] 2025-11-23 05:16:02,545 | INFO     | nevents: 1000
[2025-11-23 00:16:35] 2025-11-23 05:16:02,545 | INFO     | neventsw: 0
[2025-11-23 00:16:35] 2025-11-23 05:16:02,546 | INFO     | pid: 29114
[2025-11-23 00:16:35] 2025-11-23 05:16:02,546 | INFO     | pgrp: 29114
[2025-11-23 00:16:35] 2025-11-23 05:16:02,546 | INFO     | corecount: 8
[2025-11-23 00:16:35] 2025-11-23 05:16:02,546 | INFO     | event service: False
[2025-11-23 00:16:35] 2025-11-23 05:16:02,546 | INFO     | sizes: {0: 2298577, 1: 2298776, 6: 2299038, 11: 2299066, 40232: 2342768, 40236: 2351946, 40243: 2352136}
[2025-11-23 00:16:35] 2025-11-23 05:16:02,546 | INFO     | --------------------------------------------------
[2025-11-23 00:16:35] 2025-11-23 05:16:02,546 | INFO     | 
[2025-11-23 00:16:35] 2025-11-23 05:16:02,547 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 00:16:35] 2025-11-23 05:16:02,574 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 00:16:35] 2025-11-23 05:16:02,574 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 00:16:35] 2025-11-23 05:16:02,574 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 00:16:35] 2025-11-23 05:16:02,574 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 00:16:35] 2025-11-23 05:16:02,575 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 00:16:35] 2025-11-23 05:16:02,575 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 00:16:35] 2025-11-23 05:16:02,575 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 00:16:35] 2025-11-23 05:16:02,575 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 00:16:35] 2025-11-23 05:16:02,576 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 00:16:35] 2025-11-23 05:16:02,576 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 00:16:35] 2025-11-23 05:16:02,576 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 00:16:35] 2025-11-23 05:16:02,576 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 00:16:35] 2025-11-23 05:16:02,576 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 00:16:35] 2025-11-23 05:16:02,576 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 00:16:35] 2025-11-23 05:16:02,577 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 00:16:35] 2025-11-23 05:16:02,577 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 00:16:35] 2025-11-23 05:16:02,577 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 00:16:35] 2025-11-23 05:16:02,577 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 00:16:35] 2025-11-23 05:16:02,577 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 00:16:35] 2025-11-23 05:16:02,577 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 00:16:35] 2025-11-23 05:16:02,578 | INFO     | job 6895330349 has completed (purged errors)
[2025-11-23 00:16:35] 2025-11-23 05:16:02,578 | INFO     | overall cleanup function is called
[2025-11-23 00:16:35] 2025-11-23 05:16:03,594 | INFO     | --- collectZombieJob: --- 10, [29114]
[2025-11-23 00:16:35] 2025-11-23 05:16:03,594 | INFO     | zombie collector waiting for pid 29114
[2025-11-23 00:16:35] 2025-11-23 05:16:03,595 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 00:16:35] 2025-11-23 05:16:03,595 | INFO     | collected zombie processes
[2025-11-23 00:16:35] 2025-11-23 05:16:03,595 | INFO     | will attempt to kill all subprocesses of pid=29114
[2025-11-23 00:16:35] 2025-11-23 05:16:03,678 | INFO     | process IDs to be killed: [29114] (in reverse order)
[2025-11-23 00:16:35] 2025-11-23 05:16:03,732 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 00:16:35] 2025-11-23 05:16:03,732 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 00:16:35] 2025-11-23 05:16:03,737 | INFO     | did not find any defunct processes belonging to 29114
[2025-11-23 00:16:35] 2025-11-23 05:16:03,739 | INFO     | did not find any defunct processes belonging to 29114
[2025-11-23 00:16:35] 2025-11-23 05:16:03,742 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 00:16:35] 2025-11-23 05:16:03,742 | INFO     | ready for new job
[2025-11-23 00:16:35] 2025-11-23 05:16:03,742 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 00:16:35] 2025-11-23 05:16:03,745 | INFO     | ***************************************
[2025-11-23 00:16:35] 2025-11-23 05:16:03,746 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 00:16:35] 2025-11-23 05:16:03,746 | INFO     | ***************************************
[2025-11-23 00:16:35] 2025-11-23 05:16:03,746 | INFO     | 
[2025-11-23 00:16:35] 2025-11-23 05:16:03,746 | INFO     | architecture information:
[2025-11-23 00:16:35] 2025-11-23 05:16:03,747 | INFO     | executing command: cat /etc/os-release
[2025-11-23 00:16:35] 2025-11-23 05:16:03,767 | INFO     | cat /etc/os-release:
[2025-11-23 00:16:35] NAME="CentOS Linux"
[2025-11-23 00:16:35] VERSION="7 (Core)"
[2025-11-23 00:16:35] ID="centos"
[2025-11-23 00:16:35] ID_LIKE="rhel fedora"
[2025-11-23 00:16:35] VERSION_ID="7"
[2025-11-23 00:16:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 00:16:35] ANSI_COLOR="0;31"
[2025-11-23 00:16:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 00:16:35] HOME_URL="https://www.centos.org/"
[2025-11-23 00:16:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 00:16:35] 
[2025-11-23 00:16:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 00:16:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 00:16:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 00:16:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 00:16:35] 
[2025-11-23 00:16:35] 2025-11-23 05:16:03,768 | INFO     | ***************************************
[2025-11-23 00:16:35] 2025-11-23 05:16:04,271 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 00:16:35] 2025-11-23 05:16:04,290 | INFO     | sufficient remaining disk space (17467179008 B)
[2025-11-23 00:16:35] 2025-11-23 05:16:04,291 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 00:16:35] 2025-11-23 05:16:04,291 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 00:16:35] 2025-11-23 05:16:04,291 | INFO     | update_server=False
[2025-11-23 00:16:35] 2025-11-23 05:16:04,292 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 00:16:35] 2025-11-23 05:16:04,292 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 00:16:35] 2025-11-23 05:16:04,293 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 00:16:35] 2025-11-23 05:16:04,476 | INFO     | all data control threads have been joined
[2025-11-23 00:16:35] 2025-11-23 05:16:04,688 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 00:16:35] 2025-11-23 05:16:04,688 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 00:16:35] 2025-11-23 05:16:04,688 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 00:16:35] 2025-11-23 05:16:04,689 | INFO     | will abort loop
[2025-11-23 00:16:35] 2025-11-23 05:16:05,297 | INFO     | [job] retrieve thread has finished
[2025-11-23 00:16:35] 2025-11-23 05:16:05,299 | INFO     | [job] queue monitor thread has finished
[2025-11-23 00:16:35] 2025-11-23 05:16:05,335 | INFO     | [job] validate thread has finished
[2025-11-23 00:16:35] 2025-11-23 05:16:05,438 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 00:16:35] 2025-11-23 05:16:05,481 | INFO     | [data] control thread has finished
[2025-11-23 00:16:35] 2025-11-23 05:16:05,510 | INFO     | all payload control threads have been joined
[2025-11-23 00:16:35] 2025-11-23 05:16:05,667 | INFO     | [payload] validate_post thread has finished
[2025-11-23 00:16:35] 2025-11-23 05:16:05,690 | INFO     | [job] job monitor thread has finished
[2025-11-23 00:16:35] 2025-11-23 05:16:05,718 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 00:16:35] 2025-11-23 05:16:05,892 | INFO     | all job control threads have been joined
[2025-11-23 00:16:35] 2025-11-23 05:16:06,299 | INFO     | [data] copytool_out thread has finished
[2025-11-23 00:16:35] 2025-11-23 05:16:06,323 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 00:16:35] 2025-11-23 05:16:06,324 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 00:16:35] 2025-11-23 05:16:06,324 | INFO     | [data] copytool_in thread has finished
[2025-11-23 00:16:35] 2025-11-23 05:16:06,441 | INFO     | [payload] failed_post thread has finished
[2025-11-23 00:16:35] 2025-11-23 05:16:06,445 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 00:16:35] 2025-11-23 05:16:06,516 | INFO     | [payload] control thread has finished
[2025-11-23 00:16:35] 2025-11-23 05:16:06,898 | INFO     | [job] control thread has finished
[2025-11-23 00:16:35] 2025-11-23 05:16:09,170 | INFO     | [monitor] cgroup control has ended
[2025-11-23 00:16:35] 2025-11-23 05:16:10,451 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 00:16:35] 2025-11-23 05:16:11,824 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140053221001024)>', '<ExcThread(monitor, started 140052508178176)>']
[2025-11-23 00:16:35] 2025-11-23 05:16:16,825 | INFO     | all workflow threads have been joined
[2025-11-23 00:16:35] 2025-11-23 05:16:16,825 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 00:16:35] 2025-11-23 05:16:16,826 | INFO     | traces error code: 0
[2025-11-23 00:16:35] 2025-11-23 05:16:16,826 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 00:16:35] 2025-11-23 05:16:35,148 | INFO     | PID=21646 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 00:16:35] 2025-11-23 05:16:35,149 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 00:16:35] 2025-11-23 05:16:35,149 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 00:16:35] 2025-11-23 05:16:35,149 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 00:16:35] 2025-11-23 05:16:35,149 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 00:16:35] 2025-11-23 05:16:35,149 | INFO     | [monitor] control thread has ended
[2025-11-23 00:16:35] 2025-11-23 05:16:35,256 [wrapper] ==== pilot stdout END ====
[2025-11-23 00:16:35] 2025-11-23 05:16:35,260 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 00:16:35] 2025-11-23 05:16:35,265 [wrapper] pilotpid: 21646
[2025-11-23 00:16:35] 2025-11-23 05:16:35,269 [wrapper] Pilot exit status: 0
[2025-11-23 00:16:35] 2025-11-23 05:16:35,285 [wrapper] pandaids: 6895330349
[2025-11-23 00:16:35] 2025-11-23 05:16:35,333 [wrapper] cleanup supervisor_pilot 26469 21647
[2025-11-23 00:16:35] 2025-11-23 05:16:35,337 [wrapper] Test setup, not cleaning
[2025-11-23 00:16:35] 2025-11-23 05:16:35,342 [wrapper] apfmon messages muted
[2025-11-23 00:16:35] 2025-11-23 05:16:35,346 [wrapper] ==== wrapper stdout END ====
[2025-11-23 00:16:35] 2025-11-23 05:16:35,351 [wrapper] ==== wrapper stderr END ====
[2025-11-23 00:16:35]  *** Error codes and diagnostics ***
[2025-11-23 00:16:35]     "exeErrorCode": 0,
[2025-11-23 00:16:35]     "exeErrorDiag": "",
[2025-11-23 00:16:35]     "pilotErrorCode": 0,
[2025-11-23 00:16:35]     "pilotErrorDiag": "",
[2025-11-23 00:16:35]  *** Listing of results directory ***
[2025-11-23 00:16:35] total 1313864
[2025-11-23 00:16:35] -rw-r--r-- 1 boincer umatlas    598293 Nov  6 03:41 pilot3.tar.gz
[2025-11-23 00:16:35] -rwx------ 1 boincer umatlas     36292 Nov 21 15:22 runpilot2-wrapper.sh
[2025-11-23 00:16:35] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 15:22 queuedata.json
[2025-11-23 00:16:35] -rw-r--r-- 1 boincer umatlas       100 Nov 22 13:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 00:16:35] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 13:04 run_atlas
[2025-11-23 00:16:35] -rw-r--r-- 1 boincer umatlas       105 Nov 22 13:04 job.xml
[2025-11-23 00:16:35] -rw-r--r-- 2 boincer umatlas 410315978 Nov 22 13:04 EVNT.47483658._001040.pool.root.1
[2025-11-23 00:16:35] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 13:04 start_atlas.sh
[2025-11-23 00:16:35] drwxrwx--x 2 boincer umatlas      4096 Nov 22 13:04 shared
[2025-11-23 00:16:35] -rw-r--r-- 2 boincer umatlas    611273 Nov 22 13:04 input.tar.gz
[2025-11-23 00:16:35] -rw-r--r-- 1 boincer umatlas         0 Nov 22 13:04 boinc_lockfile
[2025-11-23 00:16:35] -rw-r--r-- 1 boincer umatlas      2781 Nov 22 13:04 pandaJob.out
[2025-11-23 00:16:35] -rw------- 1 boincer umatlas        57 Nov 22 13:04 setup.sh.local
[2025-11-23 00:16:35] -rw------- 1 boincer umatlas    989776 Nov 22 13:05 agis_schedconf.cvmfs.json
[2025-11-23 00:16:35] drwx------ 7 boincer umatlas      4096 Nov 22 13:05 pilot3
[2025-11-23 00:16:35] -rw-r--r-- 1 boincer umatlas       532 Nov 23 00:04 boinc_task_state.xml
[2025-11-23 00:16:35] -rw-r--r-- 1 boincer umatlas      5912 Nov 23 00:11 init_data.xml
[2025-11-23 00:16:35] -rw------- 1 boincer umatlas 916163206 Nov 23 00:15 HITS.47556149._000261.pool.root.1
[2025-11-23 00:16:35] -rw------- 1 boincer umatlas      1064 Nov 23 00:15 memory_monitor_summary.json
[2025-11-23 00:16:35] -rw------- 1 boincer umatlas   1526164 Nov 23 00:15 agis_ddmendpoints.agis.ALL.json
[2025-11-23 00:16:35] -rw------- 1 boincer umatlas   1918484 Nov 23 00:15 log.47556149._000261.job.log.tgz.1
[2025-11-23 00:16:35] -rw------- 1 boincer umatlas      8653 Nov 23 00:16 heartbeat.json
[2025-11-23 00:16:35] -rw-r--r-- 1 boincer umatlas        29 Nov 23 00:16 wrapper_checkpoint.txt
[2025-11-23 00:16:35] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 00:16 boinc_mmap_file
[2025-11-23 00:16:35] -rw------- 1 boincer umatlas        95 Nov 23 00:16 pilot_heartbeat.json
[2025-11-23 00:16:35] -rw------- 1 boincer umatlas       745 Nov 23 00:16 pilotlog.txt
[2025-11-23 00:16:35] -rw------- 1 boincer umatlas   5555027 Nov 23 00:16 log.47556149._000261.job.log.1
[2025-11-23 00:16:35] -rw------- 1 boincer umatlas       353 Nov 23 00:16 output.list
[2025-11-23 00:16:35] -rw-r--r-- 1 boincer umatlas       620 Nov 23 00:16 runtime_log
[2025-11-23 00:16:35] -rw------- 1 boincer umatlas   7495680 Nov 23 00:16 result.tar.gz
[2025-11-23 00:16:35] -rw------- 1 boincer umatlas       667 Nov 23 00:16 Uh2KDmSpmg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrhJKDmEHm1rm.diag
[2025-11-23 00:16:35] -rw-r--r-- 1 boincer umatlas      9343 Nov 23 00:16 runtime_log.err
[2025-11-23 00:16:35] -rw-r--r-- 1 boincer umatlas     21273 Nov 23 00:16 stderr.txt
[2025-11-23 00:16:35] HITS file was successfully produced:
[2025-11-23 00:16:35] -rw------- 1 boincer umatlas 916163206 Nov 23 00:15 shared/HITS.pool.root.1
[2025-11-23 00:16:35]  *** Contents of shared directory: ***
[2025-11-23 00:16:35] total 1303336
[2025-11-23 00:16:35] -rw-r--r-- 2 boincer umatlas 410315978 Nov 22 13:04 ATLAS.root_0
[2025-11-23 00:16:35] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 13:04 start_atlas.sh
[2025-11-23 00:16:35] -rw-r--r-- 2 boincer umatlas    611273 Nov 22 13:04 input.tar.gz
[2025-11-23 00:16:35] -rw------- 1 boincer umatlas 916163206 Nov 23 00:15 HITS.pool.root.1
[2025-11-23 00:16:35] -rw------- 1 boincer umatlas   7495680 Nov 23 00:16 result.tar.gz
00:16:37 (17902): run_atlas exited; CPU time 310356.140597
00:16:37 (17902): called boinc_finish(0)

</stderr_txt>
]]>

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