Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:21:32 (1691327): wrapper (7.7.26015): starting
05:21:32 (1691327): wrapper: running run_atlas (--nthreads 3)
[2025-11-28 05:21:32] Arguments: --nthreads 3
[2025-11-28 05:21:32] Threads: 3
[2025-11-28 05:21:32] Checking for CVMFS
[2025-11-28 05:21:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 05:21:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 05:21:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 05:21:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 05:21:32] 2.9.2.0 4064095 13732 92356 153397 2 81 10734076 36864001 0 130560 0 5076064 99.943 673974 5569 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-28 05:21:32] CVMFS is ok
[2025-11-28 05:21:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 05:21:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 05:21:32] Further information can be found at the LHC@home message board.
[2025-11-28 05:21:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 05:21:32] Checking for apptainer binary...
[2025-11-28 05:21:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 05:21:32] Running /usr/bin/apptainer --version
[2025-11-28 05:21:32] apptainer version 1.4.1-1.1
[2025-11-28 05:21:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 05:21:32] thA371a
[2025-11-28 05:21:32] apptainer works
[2025-11-28 05:21:32] Set ATHENA_PROC_NUMBER=3
[2025-11-28 05:21:32] Set ATHENA_CORE_NUMBER=3
[2025-11-28 05:21:32] Starting ATLAS job with PandaID=6895330217
[2025-11-28 05:21:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 13:35:19]  *** The last 200 lines of the pilot log: ***
[2025-11-28 13:35:19] VERSION="7 (Core)"
[2025-11-28 13:35:19] ID="centos"
[2025-11-28 13:35:19] ID_LIKE="rhel fedora"
[2025-11-28 13:35:19] VERSION_ID="7"
[2025-11-28 13:35:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 13:35:19] ANSI_COLOR="0;31"
[2025-11-28 13:35:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 13:35:19] HOME_URL="https://www.centos.org/"
[2025-11-28 13:35:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 13:35:19] 
[2025-11-28 13:35:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 13:35:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 13:35:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 13:35:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 13:35:19] 
[2025-11-28 13:35:19] 2025-11-28 12:34:30,343 | INFO     | ***************************************
[2025-11-28 13:35:19] 2025-11-28 12:34:30,847 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-28 13:35:19] 2025-11-28 12:34:30,859 | INFO     | sufficient remaining disk space (243237126144 B)
[2025-11-28 13:35:19] 2025-11-28 12:34:30,860 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 13:35:19] 2025-11-28 12:34:30,860 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 13:35:19] 2025-11-28 12:34:30,860 | INFO     | update_server=False
[2025-11-28 13:35:19] 2025-11-28 12:34:30,860 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 13:35:19] 2025-11-28 12:34:30,860 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 13:35:19] 2025-11-28 12:34:30,860 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 13:35:19] 2025-11-28 12:34:31,120 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 13:35:19] 2025-11-28 12:34:31,120 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 13:35:19] 2025-11-28 12:34:31,120 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 13:35:19] 2025-11-28 12:34:31,120 | INFO     | will abort loop
[2025-11-28 13:35:19] 2025-11-28 12:34:31,193 | INFO     | job.realtimelogging is not enabled
[2025-11-28 13:35:19] 2025-11-28 12:34:31,369 | INFO     | all payload control threads have been joined
[2025-11-28 13:35:19] 2025-11-28 12:34:31,600 | INFO     | all job control threads have been joined
[2025-11-28 13:35:19] 2025-11-28 12:34:31,866 | INFO     | [job] retrieve thread has finished
[2025-11-28 13:35:19] 2025-11-28 12:34:31,866 | INFO     | [job] queue monitor thread has finished
[2025-11-28 13:35:19] 2025-11-28 12:34:31,900 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 13:35:19] 2025-11-28 12:34:31,917 | INFO     | [payload] validate_post thread has finished
[2025-11-28 13:35:19] 2025-11-28 12:34:31,958 | INFO     | all data control threads have been joined
[2025-11-28 13:35:19] 2025-11-28 12:34:32,122 | INFO     | [job] job monitor thread has finished
[2025-11-28 13:35:19] 2025-11-28 12:34:32,199 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 13:35:19] 2025-11-28 12:34:32,375 | INFO     | [payload] control thread has finished
[2025-11-28 13:35:19] 2025-11-28 12:34:32,495 | INFO     | [data] copytool_in thread has finished
[2025-11-28 13:35:19] 2025-11-28 12:34:32,501 | INFO     | [payload] failed_post thread has finished
[2025-11-28 13:35:19] 2025-11-28 12:34:32,606 | INFO     | [job] control thread has finished
[2025-11-28 13:35:19] 2025-11-28 12:34:32,866 | INFO     | [data] copytool_out thread has finished
[2025-11-28 13:35:19] 2025-11-28 12:34:32,922 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 13:35:19] 2025-11-28 12:34:32,964 | INFO     | [data] control thread has finished
[2025-11-28 13:35:19] 2025-11-28 12:34:32,990 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 13:35:19] 2025-11-28 12:34:33,078 | INFO     | [job] validate thread has finished
[2025-11-28 13:35:19] 2025-11-28 12:34:33,123 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 13:35:19] 2025-11-28 12:34:36,928 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 13:35:19] 2025-11-28 12:35:01,725 | INFO     | PID=1695050 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 13:35:19] 2025-11-28 12:35:01,725 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 13:35:19] 2025-11-28 12:35:01,725 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 13:35:19] 2025-11-28 12:35:01,725 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 13:35:19] 2025-11-28 12:35:13,817 | INFO     | [monitor] cgroup control has ended
[2025-11-28 13:35:19] 2025-11-28 12:35:14,340 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139714093332288)>', '<ExcThread(monitor, started 139713474197248)>']
[2025-11-28 13:35:19] 2025-11-28 12:35:14,794 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 13:35:19] 2025-11-28 12:35:14,794 | INFO     | [monitor] control thread has ended
[2025-11-28 13:35:19] 2025-11-28 12:35:19,366 | INFO     | all workflow threads have been joined
[2025-11-28 13:35:19] 2025-11-28 12:35:19,366 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 13:35:19] 2025-11-28 12:35:19,366 | INFO     | traces error code: 0
[2025-11-28 13:35:19] 2025-11-28 12:35:19,366 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 13:35:19] 2025-11-28 12:35:19,417 [wrapper] ==== pilot stdout END ====
[2025-11-28 13:35:19] 2025-11-28 12:35:19,420 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 13:35:19] 2025-11-28 12:35:19,422 [wrapper] pilotpid: 1695050
[2025-11-28 13:35:19] 2025-11-28 12:35:19,424 [wrapper] Pilot exit status: 0
[2025-11-28 13:35:19] 2025-11-28 12:35:19,431 [wrapper] pandaids: 6895330217
[2025-11-28 13:35:19] 2025-11-28 12:35:19,448 [wrapper] cleanup supervisor_pilot 1752651 1695051
[2025-11-28 13:35:19] 2025-11-28 12:35:19,450 [wrapper] Test setup, not cleaning
[2025-11-28 13:35:19] 2025-11-28 12:35:19,453 [wrapper] apfmon messages muted
[2025-11-28 13:35:19] 2025-11-28 12:35:19,455 [wrapper] ==== wrapper stdout END ====
[2025-11-28 13:35:19] 2025-11-28 12:35:19,457 [wrapper] ==== wrapper stderr END ====
[2025-11-28 13:35:19]  *** Error codes and diagnostics ***
[2025-11-28 13:35:19]     "exeErrorCode": 0,
[2025-11-28 13:35:19]     "exeErrorDiag": "",
[2025-11-28 13:35:19]     "pilotErrorCode": 0,
[2025-11-28 13:35:19]     "pilotErrorDiag": "",
[2025-11-28 13:35:19]  *** Listing of results directory ***
[2025-11-28 13:35:19] total 1307524
[2025-11-28 13:35:19] -rw-r--r-- 1 boinc boinc    576529 Nov 21 20:48 pilot3.tar.gz
[2025-11-28 13:35:19] -rw-r--r-- 1 boinc boinc      5112 Nov 21 21:07 queuedata.json
[2025-11-28 13:35:19] -rwx------ 1 boinc boinc     36292 Nov 21 21:08 runpilot2-wrapper.sh
[2025-11-28 13:35:19] -rw-r--r-- 1 boinc boinc       100 Nov 28 05:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 13:35:19] -rwxr-xr-x 1 boinc boinc      7986 Nov 28 05:21 run_atlas
[2025-11-28 13:35:19] -rw-r--r-- 1 boinc boinc       105 Nov 28 05:21 job.xml
[2025-11-28 13:35:19] -rw-r--r-- 2 boinc boinc 407857024 Nov 28 05:21 EVNT.47483658._000131.pool.root.1
[2025-11-28 13:35:19] -rw-r--r-- 2 boinc boinc    590101 Nov 28 05:21 input.tar.gz
[2025-11-28 13:35:19] -rw-r--r-- 2 boinc boinc     15847 Nov 28 05:21 start_atlas.sh
[2025-11-28 13:35:19] drwxrwx--x 2 boinc boinc      4096 Nov 28 05:21 shared
[2025-11-28 13:35:19] -rw-r--r-- 1 boinc boinc         0 Nov 28 05:21 boinc_setup_complete
[2025-11-28 13:35:19] -rw-r--r-- 1 boinc boinc      6441 Nov 28 05:21 init_data.xml
[2025-11-28 13:35:19] -rw-r--r-- 1 boinc boinc         0 Nov 28 05:21 boinc_lockfile
[2025-11-28 13:35:19] -rw-r--r-- 1 boinc boinc      2785 Nov 28 05:21 pandaJob.out
[2025-11-28 13:35:19] -rw------- 1 boinc boinc    991858 Nov 28 05:21 agis_schedconf.cvmfs.json
[2025-11-28 13:35:19] drwx------ 5 boinc boinc      4096 Nov 28 05:21 pilot3
[2025-11-28 13:35:19] -rw-r--r-- 1 boinc boinc       531 Nov 28 13:30 boinc_task_state.xml
[2025-11-28 13:35:19] -rw------- 1 boinc boinc        95 Nov 28 13:34 pilot_heartbeat.json
[2025-11-28 13:35:19] -rw------- 1 boinc boinc 916449221 Nov 28 13:34 HITS.47556137._001302.pool.root.1
[2025-11-28 13:35:19] -rw------- 1 boinc boinc      1038 Nov 28 13:34 memory_monitor_summary.json
[2025-11-28 13:35:19] -rw------- 1 boinc boinc   1516240 Nov 28 13:34 agis_ddmendpoints.agis.ALL.json
[2025-11-28 13:35:19] -rw------- 1 boinc boinc   1181292 Nov 28 13:34 log.47556137._001302.job.log.tgz.1
[2025-11-28 13:35:19] -rw------- 1 boinc boinc      8575 Nov 28 13:34 heartbeat.json
[2025-11-28 13:35:19] -rw-r--r-- 1 boinc boinc        28 Nov 28 13:35 wrapper_checkpoint.txt
[2025-11-28 13:35:19] -rw-r--r-- 1 boinc boinc      8192 Nov 28 13:35 boinc_mmap_file
[2025-11-28 13:35:19] -rw------- 1 boinc boinc      5010 Nov 28 13:35 pilotlog.txt
[2025-11-28 13:35:19] -rw------- 1 boinc boinc   4163281 Nov 28 13:35 log.47556137._001302.job.log.1
[2025-11-28 13:35:19] -rw------- 1 boinc boinc       353 Nov 28 13:35 output.list
[2025-11-28 13:35:19] -rw-r--r-- 1 boinc boinc       620 Nov 28 13:35 runtime_log
[2025-11-28 13:35:19] -rw------- 1 boinc boinc   5365760 Nov 28 13:35 result.tar.gz
[2025-11-28 13:35:19] -rw-r--r-- 1 boinc boinc      8903 Nov 28 13:35 runtime_log.err
[2025-11-28 13:35:19] -rw------- 1 boinc boinc       666 Nov 28 13:35 eO6NDmebmg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmnnHKDmKtkxCn.diag
[2025-11-28 13:35:19] -rw-r--r-- 1 boinc boinc      8991 Nov 28 13:35 stderr.txt
[2025-11-28 13:35:19] HITS file was successfully produced:
[2025-11-28 13:35:19] -rw------- 1 boinc boinc 916449221 Nov 28 13:34 shared/HITS.pool.root.1
[2025-11-28 13:35:19]  *** Contents of shared directory: ***
[2025-11-28 13:35:19] total 1299116
[2025-11-28 13:35:19] -rw-r--r-- 2 boinc boinc 407857024 Nov 28 05:21 ATLAS.root_0
[2025-11-28 13:35:19] -rw-r--r-- 2 boinc boinc    590101 Nov 28 05:21 input.tar.gz
[2025-11-28 13:35:19] -rw-r--r-- 2 boinc boinc     15847 Nov 28 05:21 start_atlas.sh
[2025-11-28 13:35:19] -rw------- 1 boinc boinc 916449221 Nov 28 13:34 HITS.pool.root.1
[2025-11-28 13:35:19] -rw------- 1 boinc boinc   5365760 Nov 28 13:35 result.tar.gz
13:35:21 (1691327): run_atlas exited; CPU time 87352.847849
13:35:21 (1691327): called boinc_finish(0)

</stderr_txt>
]]>

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