Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:43:05 (2543784): wrapper (7.7.26015): starting
12:43:05 (2543784): wrapper: running run_atlas (--nthreads 4)
[2025-11-25 12:43:05] Arguments: --nthreads 4
[2025-11-25 12:43:05] Threads: 4
[2025-11-25 12:43:05] Checking for CVMFS
[2025-11-25 12:43:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 12:43:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 12:43:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 12:43:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 12:43:06] 2.9.2.0 1145218 9686 89160 153281 3 81 31199049 36864000 0 130560 0 3905893 99.931 502942 7448 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 12:43:06] CVMFS is ok
[2025-11-25 12:43:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 12:43:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 12:43:06] Further information can be found at the LHC@home message board.
[2025-11-25 12:43:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 12:43:06] Checking for apptainer binary...
[2025-11-25 12:43:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 12:43:06] Running /usr/bin/apptainer --version
[2025-11-25 12:43:06] apptainer version 1.4.1-1.1
[2025-11-25 12:43:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 12:43:06] thA315a
[2025-11-25 12:43:06] apptainer works
[2025-11-25 12:43:06] Set ATHENA_PROC_NUMBER=4
[2025-11-25 12:43:06] Set ATHENA_CORE_NUMBER=4
[2025-11-25 12:43:06] Starting ATLAS job with PandaID=6895329400
[2025-11-25 12:43:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 19:30:51]  *** The last 200 lines of the pilot log: ***
[2025-11-25 19:30:51] 2025-11-25 18:29:49,571 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 19:30:51] 2025-11-25 18:29:49,571 | INFO     | collected zombie processes
[2025-11-25 19:30:51] 2025-11-25 18:29:49,571 | INFO     | will attempt to kill all subprocesses of pid=2554161
[2025-11-25 19:30:51] 2025-11-25 18:29:49,615 | INFO     | process IDs to be killed: [2554161] (in reverse order)
[2025-11-25 19:30:51] 2025-11-25 18:29:49,647 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 19:30:51] 2025-11-25 18:29:49,647 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 19:30:51] 2025-11-25 18:29:49,649 | INFO     | did not find any defunct processes belonging to 2554161
[2025-11-25 19:30:51] 2025-11-25 18:29:49,650 | INFO     | did not find any defunct processes belonging to 2554161
[2025-11-25 19:30:51] 2025-11-25 18:29:49,650 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 19:30:51] 2025-11-25 18:29:49,651 | INFO     | ready for new job
[2025-11-25 19:30:51] 2025-11-25 18:29:49,651 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 19:30:51] 2025-11-25 18:29:49,652 | INFO     | ***************************************
[2025-11-25 19:30:51] 2025-11-25 18:29:49,652 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 19:30:51] 2025-11-25 18:29:49,652 | INFO     | ***************************************
[2025-11-25 19:30:51] 2025-11-25 18:29:49,652 | INFO     | 
[2025-11-25 19:30:51] 2025-11-25 18:29:49,652 | INFO     | architecture information:
[2025-11-25 19:30:51] 2025-11-25 18:29:49,653 | INFO     | executing command: cat /etc/os-release
[2025-11-25 19:30:51] 2025-11-25 18:29:49,666 | INFO     | cat /etc/os-release:
[2025-11-25 19:30:51] NAME="CentOS Linux"
[2025-11-25 19:30:51] VERSION="7 (Core)"
[2025-11-25 19:30:51] ID="centos"
[2025-11-25 19:30:51] ID_LIKE="rhel fedora"
[2025-11-25 19:30:51] VERSION_ID="7"
[2025-11-25 19:30:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 19:30:51] ANSI_COLOR="0;31"
[2025-11-25 19:30:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 19:30:51] HOME_URL="https://www.centos.org/"
[2025-11-25 19:30:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 19:30:51] 
[2025-11-25 19:30:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 19:30:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 19:30:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 19:30:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 19:30:51] 
[2025-11-25 19:30:51] 2025-11-25 18:29:49,666 | INFO     | ***************************************
[2025-11-25 19:30:51] 2025-11-25 18:29:50,169 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-25 19:30:51] 2025-11-25 18:29:50,186 | INFO     | sufficient remaining disk space (224724516864 B)
[2025-11-25 19:30:51] 2025-11-25 18:29:50,186 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 19:30:51] 2025-11-25 18:29:50,186 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 19:30:51] 2025-11-25 18:29:50,186 | INFO     | update_server=False
[2025-11-25 19:30:51] 2025-11-25 18:29:50,186 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 19:30:51] 2025-11-25 18:29:50,186 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:30:51] 2025-11-25 18:29:50,187 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:30:51] 2025-11-25 18:29:50,187 | INFO     | aborting loop
[2025-11-25 19:30:51] 2025-11-25 18:29:50,403 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 19:30:51] 2025-11-25 18:29:50,980 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 19:30:51] 2025-11-25 18:29:51,132 | INFO     | all data control threads have been joined
[2025-11-25 19:30:51] 2025-11-25 18:29:51,192 | INFO     | [job] retrieve thread has finished
[2025-11-25 19:30:51] 2025-11-25 18:29:51,192 | INFO     | [job] queue monitor thread has finished
[2025-11-25 19:30:51] 2025-11-25 18:29:51,193 | INFO     | [job] job monitor thread has finished
[2025-11-25 19:30:51] 2025-11-25 18:29:51,461 | INFO     | all job control threads have been joined
[2025-11-25 19:30:51] 2025-11-25 18:29:51,656 | INFO     | all payload control threads have been joined
[2025-11-25 19:30:51] 2025-11-25 18:29:51,694 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 19:30:51] 2025-11-25 18:29:51,717 | INFO     | [payload] failed_post thread has finished
[2025-11-25 19:30:51] 2025-11-25 18:29:51,900 | INFO     | [job] validate thread has finished
[2025-11-25 19:30:51] 2025-11-25 18:29:51,951 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 19:30:51] 2025-11-25 18:29:52,138 | INFO     | [data] control thread has finished
[2025-11-25 19:30:51] 2025-11-25 18:29:52,330 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 19:30:51] 2025-11-25 18:29:52,336 | INFO     | [payload] validate_post thread has finished
[2025-11-25 19:30:51] 2025-11-25 18:29:52,467 | INFO     | [job] control thread has finished
[2025-11-25 19:30:51] 2025-11-25 18:29:52,605 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 19:30:51] 2025-11-25 18:29:52,606 | INFO     | [data] copytool_in thread has finished
[2025-11-25 19:30:51] 2025-11-25 18:29:52,662 | INFO     | [payload] control thread has finished
[2025-11-25 19:30:51] 2025-11-25 18:29:52,986 | INFO     | [data] copytool_out thread has finished
[2025-11-25 19:30:51] 2025-11-25 18:29:54,410 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 19:30:51] 2025-11-25 18:30:20,794 | INFO     | PID=2547578 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 19:30:51] 2025-11-25 18:30:20,795 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 19:30:51] 2025-11-25 18:30:20,795 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 19:30:51] 2025-11-25 18:30:20,795 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 19:30:51] 2025-11-25 18:30:44,465 | INFO     | [monitor] cgroup control has ended
[2025-11-25 19:30:51] 2025-11-25 18:30:45,998 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139673147598656)>', '<ExcThread(monitor, started 139672042850048)>']
[2025-11-25 19:30:51] 2025-11-25 18:30:46,933 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 19:30:51] 2025-11-25 18:30:46,933 | INFO     | [monitor] control thread has ended
[2025-11-25 19:30:51] 2025-11-25 18:30:51,007 | INFO     | all workflow threads have been joined
[2025-11-25 19:30:51] 2025-11-25 18:30:51,008 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 19:30:51] 2025-11-25 18:30:51,008 | INFO     | traces error code: 0
[2025-11-25 19:30:51] 2025-11-25 18:30:51,008 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 19:30:51] 2025-11-25 18:30:51,078 [wrapper] ==== pilot stdout END ====
[2025-11-25 19:30:51] 2025-11-25 18:30:51,082 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 19:30:51] 2025-11-25 18:30:51,085 [wrapper] pilotpid: 2547578
[2025-11-25 19:30:51] 2025-11-25 18:30:51,089 [wrapper] Pilot exit status: 0
[2025-11-25 19:30:51] 2025-11-25 18:30:51,099 [wrapper] pandaids: 6895329400
[2025-11-25 19:30:51] 2025-11-25 18:30:51,121 [wrapper] cleanup supervisor_pilot 2600222 2547579
[2025-11-25 19:30:51] 2025-11-25 18:30:51,125 [wrapper] Test setup, not cleaning
[2025-11-25 19:30:51] 2025-11-25 18:30:51,129 [wrapper] apfmon messages muted
[2025-11-25 19:30:51] 2025-11-25 18:30:51,132 [wrapper] ==== wrapper stdout END ====
[2025-11-25 19:30:51] 2025-11-25 18:30:51,136 [wrapper] ==== wrapper stderr END ====
[2025-11-25 19:30:51]  *** Error codes and diagnostics ***
[2025-11-25 19:30:51]     "exeErrorCode": 0,
[2025-11-25 19:30:51]     "exeErrorDiag": "",
[2025-11-25 19:30:51]     "pilotErrorCode": 0,
[2025-11-25 19:30:51]     "pilotErrorDiag": "",
[2025-11-25 19:30:51]  *** Listing of results directory ***
[2025-11-25 19:30:51] total 1318184
[2025-11-25 19:30:51] -rw-r--r-- 1 boinc boinc    576529 Nov 21 19:54 pilot3.tar.gz
[2025-11-25 19:30:51] -rw-r--r-- 1 boinc boinc      5112 Nov 21 20:25 queuedata.json
[2025-11-25 19:30:51] -rwx------ 1 boinc boinc     36292 Nov 21 20:26 runpilot2-wrapper.sh
[2025-11-25 19:30:51] -rw-r--r-- 1 boinc boinc       100 Nov 25 12:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 19:30:51] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 12:43 run_atlas
[2025-11-25 19:30:51] -rw-r--r-- 1 boinc boinc       105 Nov 25 12:43 job.xml
[2025-11-25 19:30:51] -rw-r--r-- 2 boinc boinc 409763229 Nov 25 12:43 EVNT.47483658._000116.pool.root.1
[2025-11-25 19:30:51] drwxrwx--x 2 boinc boinc      4096 Nov 25 12:43 shared
[2025-11-25 19:30:51] -rw-r--r-- 2 boinc boinc    590100 Nov 25 12:43 input.tar.gz
[2025-11-25 19:30:51] -rw-r--r-- 2 boinc boinc     15847 Nov 25 12:43 start_atlas.sh
[2025-11-25 19:30:51] -rw-r--r-- 1 boinc boinc         0 Nov 25 12:43 boinc_setup_complete
[2025-11-25 19:30:51] -rw-r--r-- 1 boinc boinc      6372 Nov 25 12:43 init_data.xml
[2025-11-25 19:30:51] -rw-r--r-- 1 boinc boinc         0 Nov 25 12:43 boinc_lockfile
[2025-11-25 19:30:51] -rw-r--r-- 1 boinc boinc      2785 Nov 25 12:43 pandaJob.out
[2025-11-25 19:30:51] -rw------- 1 boinc boinc    991894 Nov 25 12:43 agis_schedconf.cvmfs.json
[2025-11-25 19:30:51] drwx------ 5 boinc boinc      4096 Nov 25 12:43 pilot3
[2025-11-25 19:30:51] -rw-r--r-- 1 boinc boinc       531 Nov 25 19:26 boinc_task_state.xml
[2025-11-25 19:30:51] -rw------- 1 boinc boinc 926772907 Nov 25 19:29 HITS.47556137._001155.pool.root.1
[2025-11-25 19:30:51] -rw------- 1 boinc boinc        95 Nov 25 19:29 pilot_heartbeat.json
[2025-11-25 19:30:51] -rw------- 1 boinc boinc      1028 Nov 25 19:29 memory_monitor_summary.json
[2025-11-25 19:30:51] -rw------- 1 boinc boinc   1516240 Nov 25 19:29 agis_ddmendpoints.agis.ALL.json
[2025-11-25 19:30:51] -rw------- 1 boinc boinc   1252400 Nov 25 19:29 log.47556137._001155.job.log.tgz.1
[2025-11-25 19:30:51] -rw------- 1 boinc boinc      8584 Nov 25 19:29 heartbeat.json
[2025-11-25 19:30:51] -rw-r--r-- 1 boinc boinc        28 Nov 25 19:30 wrapper_checkpoint.txt
[2025-11-25 19:30:51] -rw-r--r-- 1 boinc boinc      8192 Nov 25 19:30 boinc_mmap_file
[2025-11-25 19:30:51] -rw------- 1 boinc boinc      4752 Nov 25 19:30 pilotlog.txt
[2025-11-25 19:30:51] -rw------- 1 boinc boinc   3441158 Nov 25 19:30 log.47556137._001155.job.log.1
[2025-11-25 19:30:51] -rw------- 1 boinc boinc       353 Nov 25 19:30 output.list
[2025-11-25 19:30:51] -rw-r--r-- 1 boinc boinc       620 Nov 25 19:30 runtime_log
[2025-11-25 19:30:51] -rw------- 1 boinc boinc   4710400 Nov 25 19:30 result.tar.gz
[2025-11-25 19:30:51] -rw-r--r-- 1 boinc boinc      8903 Nov 25 19:30 runtime_log.err
[2025-11-25 19:30:51] -rw------- 1 boinc boinc       666 Nov 25 19:30 1TPODmrwlg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsfJKDmnqclUm.diag
[2025-11-25 19:30:51] -rw-r--r-- 1 boinc boinc     10639 Nov 25 19:30 stderr.txt
[2025-11-25 19:30:51] HITS file was successfully produced:
[2025-11-25 19:30:51] -rw------- 1 boinc boinc 926772907 Nov 25 19:29 shared/HITS.pool.root.1
[2025-11-25 19:30:51]  *** Contents of shared directory: ***
[2025-11-25 19:30:51] total 1310412
[2025-11-25 19:30:51] -rw-r--r-- 2 boinc boinc 409763229 Nov 25 12:43 ATLAS.root_0
[2025-11-25 19:30:51] -rw-r--r-- 2 boinc boinc    590100 Nov 25 12:43 input.tar.gz
[2025-11-25 19:30:51] -rw-r--r-- 2 boinc boinc     15847 Nov 25 12:43 start_atlas.sh
[2025-11-25 19:30:51] -rw------- 1 boinc boinc 926772907 Nov 25 19:29 HITS.pool.root.1
[2025-11-25 19:30:51] -rw------- 1 boinc boinc   4710400 Nov 25 19:30 result.tar.gz
19:30:52 (2543784): run_atlas exited; CPU time 95616.746197
19:30:52 (2543784): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN