Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:18:18 (2639306): wrapper (7.7.26015): starting
09:18:18 (2639306): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 09:18:18] Arguments: --nthreads 12
[2025-11-22 09:18:18] Threads: 12
[2025-11-22 09:18:18] Checking for CVMFS
[2025-11-22 09:18:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 09:18:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 09:18:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 09:18:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 09:18:19] 2.11.5.0 538441 22588 338808 153179 3 135 39308183 45568000 11505 130560 0 187497366 99.800 112061378 28080 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-22 09:18:19] CVMFS is ok
[2025-11-22 09:18:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 09:18:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 09:18:19] Further information can be found at the LHC@home message board.
[2025-11-22 09:18:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 09:18:19] Checking for apptainer binary...
[2025-11-22 09:18:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 09:18:19] Running /usr/bin/apptainer --version
[2025-11-22 09:18:19] apptainer version 1.4.1-1.el9
[2025-11-22 09:18:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 09:18:19] wns0030.triumf.lcg
[2025-11-22 09:18:19] apptainer works
[2025-11-22 09:18:19] Set ATHENA_PROC_NUMBER=12
[2025-11-22 09:18:19] Set ATHENA_CORE_NUMBER=12
[2025-11-22 09:18:19] Starting ATLAS job with PandaID=6895336855
[2025-11-22 09:18:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 09:22:58]  *** The last 200 lines of the pilot log: ***
[2025-11-22 09:22:58] 2025-11-22 17:22:25,931 | INFO     | could have reported an average CPU frequency of 2087 MHz (4 samples)
[2025-11-22 09:22:58] 2025-11-22 17:22:25,931 | INFO     | ..............................
[2025-11-22 09:22:58] 2025-11-22 17:22:25,931 | INFO     | . Timing measurements:
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | . get job = 0 s
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | . initial setup = 3 s
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | . payload setup = 7 s
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | . stage-in = 0 s
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | . payload execution = 79 s
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | . stage-out = 0 s
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | . log creation = 0 s
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | ..............................
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895336855/pilotlog.txt
[2025-11-22 09:22:58] 2025-11-22 17:22:25,945 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-22 09:22:58] - Log from pilotlog.txt -
[2025-11-22 09:22:58] 2025-11-22 17:22:25,927 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895336855/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 09:22:58] 2025-11-22 17:22:25,929 | INFO     | extracted standard info from prmon json
[2025-11-22 09:22:58] 2025-11-22 17:22:25,929 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 09:22:58] 2025-11-22 17:22:25,929 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 09:22:58] 2025-11-22 17:22:25,930 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 09:22:58] 2025-11-22 17:22:25,930 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 09:22:58] 2025-11-22 17:22:25,930 | WARNING  | wrong length of table data, x=[1763831944.0, 1763832005.0], y=[1943.0, 608858.0] (must be same and length>=4)
[2025-11-22 09:22:58] 2025-11-22 17:22:25,931 | INFO     | could have reported an average CPU frequency of 2087 MHz (4 samples)
[2025-11-22 09:22:58] 2025-11-22 17:22:25,931 | INFO     | ..............................
[2025-11-22 09:22:58] 2025-11-22 17:22:25,931 | INFO     | . Timing measurements:
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | . get job = 0 s
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | . initial setup = 3 s
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | . payload setup = 7 s
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | . stage-in = 0 s
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | . payload execution = 79 s
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | . stage-out = 0 s
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | . log creation = 0 s
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | ..............................
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895336855/pilotlog.txt
[2025-11-22 09:22:58] 2025-11-22 17:22:25,945 | WARNING  | 
[2025-11-22 09:22:58] [begin log extracts]
[2025-11-22 09:22:58] - Log from pilotlog.txt -
[2025-11-22 09:22:58] 2025-11-22 17:22:25,927 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895336855/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 09:22:58] 2025-11-22 17:22:25,929 | INFO     | extracted standard info from prmon json
[2025-11-22 09:22:58] 2025-11-22 17:22:25,929 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 09:22:58] 2025-11-22 17:22:25,929 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 09:22:58] 2025-11-22 17:22:25,930 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 09:22:58] 2025-11-22 17:22:25,930 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 09:22:58] 2025-11-22 17:22:25,930 | WARNING  | wrong length of table data, x=[1763831944.0, 1763832005.0], y=[1943.0, 608858.0] (must be same and length>=4)
[2025-11-22 09:22:58] 2025-11-22 17:22:25,931 | INFO     | could have reported an average CPU frequency of 2087 MHz (4 samples)
[2025-11-22 09:22:58] 2025-11-22 17:22:25,931 | INFO     | ..............................
[2025-11-22 09:22:58] 2025-11-22 17:22:25,931 | INFO     | . Timing measurements:
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | . get job = 0 s
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | . initial setup = 3 s
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | . payload setup = 7 s
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | . stage-in = 0 s
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | . payload execution = 79 s
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | . stage-out = 0 s
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | . log creation = 0 s
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | ..............................
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 09:22:58] 2025-11-22 17:22:25,932 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895336855/pilotlog.txt
[2025-11-22 09:22:58] [end log extracts]
[2025-11-22 09:22:58] 2025-11-22 17:22:25,946 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-22 09:22:58] 2025-11-22 17:22:25,946 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-22 09:22:58] 2025-11-22 17:22:26,019 | INFO     | 
[2025-11-22 09:22:58] 2025-11-22 17:22:26,019 | INFO     | job summary report
[2025-11-22 09:22:58] 2025-11-22 17:22:26,019 | INFO     | --------------------------------------------------
[2025-11-22 09:22:58] 2025-11-22 17:22:26,020 | INFO     | PanDA job id: 6895336855
[2025-11-22 09:22:58] 2025-11-22 17:22:26,020 | INFO     | task id: 47556137
[2025-11-22 09:22:58] 2025-11-22 17:22:26,020 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-22 09:20:13,209 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-22 09:22:58] 2025-11-22 17:22:26,020 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-22 09:22:58] 2025-11-22 17:22:26,020 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 09:22:58] 2025-11-22 17:22:26,020 | INFO     | pilot state: failed 
[2025-11-22 09:22:58] 2025-11-22 17:22:26,020 | INFO     | transexitcode: 65
[2025-11-22 09:22:58] 2025-11-22 17:22:26,020 | INFO     | exeerrorcode: 65
[2025-11-22 09:22:58] 2025-11-22 17:22:26,020 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-22 09:22:58] 2025-11-22 17:22:26,020 | INFO     | exitcode: 65
[2025-11-22 09:22:58] 2025-11-22 17:22:26,020 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-22 09:22:58] 2025-11-22 17:22:26,020 | INFO     | cpuconsumptiontime: 54 s
[2025-11-22 09:22:58] 2025-11-22 17:22:26,020 | INFO     | nevents: 0
[2025-11-22 09:22:58] 2025-11-22 17:22:26,020 | INFO     | neventsw: 0
[2025-11-22 09:22:58] 2025-11-22 17:22:26,020 | INFO     | pid: 2649480
[2025-11-22 09:22:58] 2025-11-22 17:22:26,020 | INFO     | pgrp: 2649480
[2025-11-22 09:22:58] 2025-11-22 17:22:26,021 | INFO     | corecount: 12
[2025-11-22 09:22:58] 2025-11-22 17:22:26,021 | INFO     | event service: False
[2025-11-22 09:22:58] 2025-11-22 17:22:26,021 | INFO     | sizes: {0: 2298633, 1: 2298832, 6: 2299094, 11: 2299122, 90: 2324519, 92: 2328809, 93: 2328965, 216: 2329131}
[2025-11-22 09:22:58] 2025-11-22 17:22:26,021 | INFO     | --------------------------------------------------
[2025-11-22 09:22:58] 2025-11-22 17:22:26,021 | INFO     | 
[2025-11-22 09:22:58] 2025-11-22 17:22:26,021 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-22 09:22:58] 2025-11-22 17:22:26,040 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 09:22:58] 2025-11-22 17:22:26,040 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 09:22:58] 2025-11-22 17:22:26,040 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 09:22:58] 2025-11-22 17:22:26,040 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 09:22:58] 2025-11-22 17:22:26,040 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 09:22:58] 2025-11-22 17:22:26,040 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 09:22:58] 2025-11-22 17:22:26,040 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 09:22:58] 2025-11-22 17:22:26,040 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 09:22:58] 2025-11-22 17:22:26,040 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 09:22:58] 2025-11-22 17:22:26,040 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 09:22:58] 2025-11-22 17:22:26,041 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 09:22:58] 2025-11-22 17:22:26,041 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 09:22:58] 2025-11-22 17:22:26,041 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 09:22:58] 2025-11-22 17:22:26,041 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 09:22:58] 2025-11-22 17:22:26,041 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 09:22:58] 2025-11-22 17:22:26,041 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 09:22:58] 2025-11-22 17:22:26,041 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 09:22:58] 2025-11-22 17:22:26,041 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 09:22:58] 2025-11-22 17:22:26,041 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 09:22:58] 2025-11-22 17:22:26,041 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 09:22:58] 2025-11-22 17:22:26,041 | INFO     | job 6895336855 has completed (purged errors)
[2025-11-22 09:22:58] 2025-11-22 17:22:26,041 | INFO     | overall cleanup function is called
[2025-11-22 09:22:58] 2025-11-22 17:22:27,049 | INFO     | --- collectZombieJob: --- 10, [2649480]
[2025-11-22 09:22:58] 2025-11-22 17:22:27,049 | INFO     | zombie collector waiting for pid 2649480
[2025-11-22 09:22:58] 2025-11-22 17:22:27,049 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 09:22:58] 2025-11-22 17:22:27,049 | INFO     | collected zombie processes
[2025-11-22 09:22:58] 2025-11-22 17:22:27,049 | INFO     | will attempt to kill all subprocesses of pid=2649480
[2025-11-22 09:22:58] 2025-11-22 17:22:27,237 | INFO     | process IDs to be killed: [2649480] (in reverse order)
[2025-11-22 09:22:58] 2025-11-22 17:22:27,311 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 09:22:58] 2025-11-22 17:22:27,311 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 09:22:58] 2025-11-22 17:22:27,319 | INFO     | did not find any defunct processes belonging to 2649480
[2025-11-22 09:22:58] 2025-11-22 17:22:27,326 | INFO     | did not find any defunct processes belonging to 2649480
[2025-11-22 09:22:58] 2025-11-22 17:22:27,327 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 09:22:58] 2025-11-22 17:22:27,327 | INFO     | ready for new job
[2025-11-22 09:22:58] 2025-11-22 17:22:27,327 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 09:22:58] 2025-11-22 17:22:27,329 | INFO     | ***************************************
[2025-11-22 09:22:58] 2025-11-22 17:22:27,329 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 09:22:58] 2025-11-22 17:22:27,329 | INFO     | ***************************************
[2025-11-22 09:22:58] 2025-11-22 17:22:27,330 | INFO     | 
[2025-11-22 09:22:58] 2025-11-22 17:22:27,332 | INFO     | architecture information:
[2025-11-22 09:22:58] 2025-11-22 17:22:27,332 | INFO     | executing command: cat /etc/os-release
[2025-11-22 09:22:58] 2025-11-22 17:22:27,346 | INFO     | cat /etc/os-release:
[2025-11-22 09:22:58] NAME="CentOS Linux"
[2025-11-22 09:22:58] VERSION="7 (Core)"
[2025-11-22 09:22:58] ID="centos"
[2025-11-22 09:22:58] ID_LIKE="rhel fedora"
[2025-11-22 09:22:58] VERSION_ID="7"
[2025-11-22 09:22:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 09:22:58] ANSI_COLOR="0;31"
[2025-11-22 09:22:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 09:22:58] HOME_URL="https://www.centos.org/"
[2025-11-22 09:22:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 09:22:58] 
[2025-11-22 09:22:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 09:22:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 09:22:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 09:22:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 09:22:58] 
[2025-11-22 09:22:58] 2025-11-22 17:22:27,347 | INFO     | ***************************************
[2025-11-22 09:22:58] 2025-11-22 17:22:27,851 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-22 09:22:58] 2025-11-22 17:22:27,869 | INFO     | sufficient remaining disk space (1960793079808 B)
[2025-11-22 09:22:58] 2025-11-22 17:22:27,870 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 09:22:58] 2025-11-22 17:22:27,871 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 09:22:58] 2025-11-22 17:22:27,871 | INFO     | update_server=False
[2025-11-22 09:22:58] 2025-11-22 17:22:27,871 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 09:22:58] 2025-11-22 17:22:27,871 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 09:22:58] 2025-11-22 17:22:27,872 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 09:22:58] 2025-11-22 17:22:27,920 | INFO     | all data control threads have been joined
[2025-11-22 09:22:58] 2025-11-22 17:22:28,249 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 09:22:58] 2025-11-22 17:22:28,249 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 09:22:58] 2025-11-22 17:22:28,249 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 09:22:58] 2025-11-22 17:22:28,249 | INFO     | will abort loop
[2025-11-22 09:22:58] 2025-11-22 17:22:28,286 | INFO     | all job control threads have been joined
[2025-11-22 09:22:58] 2025-11-22 17:22:28,876 | INFO     | [job] retrieve thread has finished
[2025-11-22 09:22:58] 2025-11-22 17:22:28,877 | INFO     | [job] queue monitor thread has finished
[2025-11-22 09:22:58] 2025-11-22 17:22:28,878 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 09:22:58] 2025-11-22 17:22:28,926 | INFO     | [data] control thread has finished
[2025-11-22 09:22:58] 2025-11-22 17:22:29,045 | INFO     | [payload] validate_post thread has finished
[2025-11-22 09:22:58] 2025-11-22 17:22:29,135 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 09:22:58] 2025-11-22 17:22:29,154 | INFO     | all payload control threads have been joined
[2025-11-22 09:22:58] 2025-11-22 17:22:29,255 | INFO     | [job] job monitor thread has finished
[2025-11-22 09:22:58] 2025-11-22 17:22:29,292 | INFO     | [job] control thread has finished
[2025-11-22 09:22:58] 2025-11-22 17:22:29,623 | INFO     | [payload] failed_post thread has finished
[2025-11-22 09:22:58] 2025-11-22 17:22:29,878 | INFO     | [data] copytool_out thread has finished
[2025-11-22 09:22:58] 2025-11-22 17:22:30,036 | INFO     | [job] validate thread has finished
[2025-11-22 09:22:58] 2025-11-22 17:22:30,155 | INFO     | [payload] control thread has finished
[2025-11-22 09:22:58] 2025-11-22 17:22:30,238 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 09:22:58] 2025-11-22 17:22:30,242 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 09:22:58] 2025-11-22 17:22:30,353 | INFO     | [data] copytool_in thread has finished
[2025-11-22 09:22:58] 2025-11-22 17:22:30,593 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 09:22:58] 2025-11-22 17:22:32,701 | INFO     | [monitor] cgroup control has ended
[2025-11-22 09:22:58] 2025-11-22 17:22:34,600 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 09:22:58] 2025-11-22 17:22:36,430 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140703887009600)>', '<ExcThread(monitor, started 140702927288064)>']
[2025-11-22 09:22:58] 2025-11-22 17:22:41,455 | INFO     | all workflow threads have been joined
[2025-11-22 09:22:58] 2025-11-22 17:22:41,456 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 09:22:58] 2025-11-22 17:22:41,456 | INFO     | traces error code: 0
[2025-11-22 09:22:58] 2025-11-22 17:22:41,457 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 09:22:58] 2025-11-22 17:22:57,998 | INFO     | PID=2642943 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 09:22:58] 2025-11-22 17:22:57,998 | INFO     | .. there are 14 such processes running
[2025-11-22 09:22:58] 2025-11-22 17:22:57,999 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 09:22:58] 2025-11-22 17:22:57,999 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 09:22:58] 2025-11-22 17:22:57,999 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 09:22:58] 2025-11-22 17:22:57,999 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 09:22:58] 2025-11-22 17:22:57,999 | INFO     | [monitor] control thread has ended
[2025-11-22 09:22:58] 2025-11-22 17:22:58,158 [wrapper] ==== pilot stdout END ====
[2025-11-22 09:22:58] 2025-11-22 17:22:58,162 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 09:22:58] 2025-11-22 17:22:58,166 [wrapper] pilotpid: 2642943
[2025-11-22 09:22:58] 2025-11-22 17:22:58,170 [wrapper] Pilot exit status: 0
[2025-11-22 09:22:58] 2025-11-22 17:22:58,183 [wrapper] pandaids: 6895336855
[2025-11-22 09:22:58] 2025-11-22 17:22:58,229 [wrapper] cleanup supervisor_pilot 2642949 2642944
[2025-11-22 09:22:58] 2025-11-22 17:22:58,232 [wrapper] Test setup, not cleaning
[2025-11-22 09:22:58] 2025-11-22 17:22:58,235 [wrapper] apfmon messages muted
[2025-11-22 09:22:58] 2025-11-22 17:22:58,238 [wrapper] ==== wrapper stdout END ====
[2025-11-22 09:22:58] 2025-11-22 17:22:58,245 [wrapper] ==== wrapper stderr END ====
[2025-11-22 09:22:58]  *** Error codes and diagnostics ***
[2025-11-22 09:22:58]     "exeErrorCode": 65,
[2025-11-22 09:22:58]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-22 09:22:58]     "pilotErrorCode": 1305,
[2025-11-22 09:22:58]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-22 09:22:58]  *** Listing of results directory ***
[2025-11-22 09:22:58] total 405556
[2025-11-22 09:22:58] -rw-r--r--. 1 boinc boinc    576529 Nov 21 21:46 pilot3.tar.gz
[2025-11-22 09:22:58] -rwx------. 1 boinc boinc     36292 Nov 21 21:49 runpilot2-wrapper.sh
[2025-11-22 09:22:58] -rw-r--r--. 1 boinc boinc      5112 Nov 21 21:49 queuedata.json
[2025-11-22 09:22:58] -rw-r--r--. 1 boinc boinc       100 Nov 22 09:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 09:22:58] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 09:18 run_atlas
[2025-11-22 09:22:58] -rw-r--r--. 1 boinc boinc       105 Nov 22 09:18 job.xml
[2025-11-22 09:22:58] -rw-r--r--. 1 boinc boinc      6590 Nov 22 09:18 init_data.xml
[2025-11-22 09:22:58] -rw-r--r--. 2 boinc boinc 411086665 Nov 22 09:18 EVNT.47483658._000287.pool.root.1
[2025-11-22 09:22:58] -rw-r--r--. 2 boinc boinc     15847 Nov 22 09:18 start_atlas.sh
[2025-11-22 09:22:58] drwxrwx--x. 2 boinc boinc      4096 Nov 22 09:18 shared
[2025-11-22 09:22:58] -rw-r--r--. 2 boinc boinc    590096 Nov 22 09:18 input.tar.gz
[2025-11-22 09:22:58] -rw-r--r--. 1 boinc boinc         0 Nov 22 09:18 boinc_lockfile
[2025-11-22 09:22:58] -rw-r--r--. 1 boinc boinc      2786 Nov 22 09:18 pandaJob.out
[2025-11-22 09:22:58] -rw-------. 1 boinc boinc    989768 Nov 22 09:18 agis_schedconf.cvmfs.json
[2025-11-22 09:22:58] -rw-------. 1 boinc boinc   1526164 Nov 22 09:18 agis_ddmendpoints.agis.ALL.json
[2025-11-22 09:22:58] drwx------. 5 boinc boinc      4096 Nov 22 09:18 pilot3
[2025-11-22 09:22:58] -rw-r--r--. 1 boinc boinc       523 Nov 22 09:19 boinc_task_state.xml
[2025-11-22 09:22:58] -rw-------. 1 boinc boinc       990 Nov 22 09:20 memory_monitor_summary.json
[2025-11-22 09:22:58] -rw-------. 1 boinc boinc     49308 Nov 22 09:20 log.47556137._002835.job.log.tgz.1
[2025-11-22 09:22:58] -rw-------. 1 boinc boinc     10332 Nov 22 09:22 heartbeat.json
[2025-11-22 09:22:58] -rw-r--r--. 1 boinc boinc        23 Nov 22 09:22 wrapper_checkpoint.txt
[2025-11-22 09:22:58] -rw-r--r--. 1 boinc boinc      8192 Nov 22 09:22 boinc_mmap_file
[2025-11-22 09:22:58] -rw-------. 1 boinc boinc       823 Nov 22 09:22 pilotlog.txt
[2025-11-22 09:22:58] -rw-------. 1 boinc boinc        95 Nov 22 09:22 pilot_heartbeat.json
[2025-11-22 09:22:58] -rw-------. 1 boinc boinc     97429 Nov 22 09:22 log.47556137._002835.job.log.1
[2025-11-22 09:22:58] -rw-------. 1 boinc boinc       186 Nov 22 09:22 output.list
[2025-11-22 09:22:58] -rw-r--r--. 1 boinc boinc       620 Nov 22 09:22 runtime_log
[2025-11-22 09:22:58] -rw-------. 1 boinc boinc    163840 Nov 22 09:22 result.tar.gz
[2025-11-22 09:22:58] -rw-r--r--. 1 boinc boinc      8636 Nov 22 09:22 runtime_log.err
[2025-11-22 09:22:58] -rw-------. 1 boinc boinc       646 Nov 22 09:22 8csMDmBgvg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxzHKDmfOuuln.diag
[2025-11-22 09:22:58] -rw-r--r--. 1 boinc boinc     22437 Nov 22 09:22 stderr.txt
[2025-11-22 09:22:58] No HITS result produced
[2025-11-22 09:22:58]  *** Contents of shared directory: ***
[2025-11-22 09:22:58] total 402212
[2025-11-22 09:22:58] -rw-r--r--. 2 boinc boinc 411086665 Nov 22 09:18 ATLAS.root_0
[2025-11-22 09:22:58] -rw-r--r--. 2 boinc boinc     15847 Nov 22 09:18 start_atlas.sh
[2025-11-22 09:22:58] -rw-r--r--. 2 boinc boinc    590096 Nov 22 09:18 input.tar.gz
[2025-11-22 09:22:58] -rw-------. 1 boinc boinc    163840 Nov 22 09:22 result.tar.gz
09:22:59 (2639306): run_atlas exited; CPU time 50.541456
09:22:59 (2639306): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN