Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:53:57 (206336): wrapper (7.7.26015): starting
08:53:57 (206336): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 08:53:57] Arguments: --nthreads 12
[2025-11-22 08:53:57] Threads: 12
[2025-11-22 08:53:57] Checking for CVMFS
[2025-11-22 08:53:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 08:53:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 08:53:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 08:53:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 08:53:58] 2.11.5.0 2718463 22597 238536 153178 1 684 33549554 45568000 23411 130560 0 143070110 99.786 96039392 20354 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-22 08:53:58] CVMFS is ok
[2025-11-22 08:53:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 08:53:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 08:53:58] Further information can be found at the LHC@home message board.
[2025-11-22 08:53:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 08:53:58] Checking for apptainer binary...
[2025-11-22 08:53:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 08:53:58] Running /usr/bin/apptainer --version
[2025-11-22 08:53:58] apptainer version 1.4.1-1.el9
[2025-11-22 08:53:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 08:53:58] wns0043.triumf.lcg
[2025-11-22 08:53:58] apptainer works
[2025-11-22 08:53:58] Set ATHENA_PROC_NUMBER=12
[2025-11-22 08:53:58] Set ATHENA_CORE_NUMBER=12
[2025-11-22 08:53:58] Starting ATLAS job with PandaID=6895336436
[2025-11-22 08:53:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 08:59:22]  *** The last 200 lines of the pilot log: ***
[2025-11-22 08:59:22] 2025-11-22 16:58:44,143 | INFO     | could have reported an average CPU frequency of 1508 MHz (4 samples)
[2025-11-22 08:59:22] 2025-11-22 16:58:44,143 | INFO     | ..............................
[2025-11-22 08:59:22] 2025-11-22 16:58:44,143 | INFO     | . Timing measurements:
[2025-11-22 08:59:22] 2025-11-22 16:58:44,143 | INFO     | . get job = 0 s
[2025-11-22 08:59:22] 2025-11-22 16:58:44,143 | INFO     | . initial setup = 3 s
[2025-11-22 08:59:22] 2025-11-22 16:58:44,143 | INFO     | . payload setup = 10 s
[2025-11-22 08:59:22] 2025-11-22 16:58:44,144 | INFO     | . stage-in = 0 s
[2025-11-22 08:59:22] 2025-11-22 16:58:44,144 | INFO     | . payload execution = 109 s
[2025-11-22 08:59:22] 2025-11-22 16:58:44,144 | INFO     | . stage-out = 0 s
[2025-11-22 08:59:22] 2025-11-22 16:58:44,144 | INFO     | . log creation = 0 s
[2025-11-22 08:59:22] 2025-11-22 16:58:44,144 | INFO     | ..............................
[2025-11-22 08:59:22] 2025-11-22 16:58:44,144 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 08:59:22] 2025-11-22 16:58:44,144 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895336436/pilotlog.txt
[2025-11-22 08:59:22] 2025-11-22 16:58:44,164 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-22 08:59:22] - Log from pilotlog.txt -
[2025-11-22 08:59:22] 2025-11-22 16:58:44,139 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895336436/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 08:59:22] 2025-11-22 16:58:44,140 | INFO     | extracted standard info from prmon json
[2025-11-22 08:59:22] 2025-11-22 16:58:44,140 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 08:59:22] 2025-11-22 16:58:44,140 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 08:59:22] 2025-11-22 16:58:44,141 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 08:59:22] 2025-11-22 16:58:44,141 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 08:59:22] 2025-11-22 16:58:44,142 | WARNING  | wrong length of table data, x=[1763830497.0, 1763830558.0], y=[1612.0, 370739.0] (must be same and length>=4)
[2025-11-22 08:59:22] 2025-11-22 16:58:44,143 | INFO     | could have reported an average CPU frequency of 1508 MHz (4 samples)
[2025-11-22 08:59:22] 2025-11-22 16:58:44,143 | INFO     | ..............................
[2025-11-22 08:59:22] 2025-11-22 16:58:44,143 | INFO     | . Timing measurements:
[2025-11-22 08:59:22] 2025-11-22 16:58:44,143 | INFO     | . get job = 0 s
[2025-11-22 08:59:22] 2025-11-22 16:58:44,143 | INFO     | . initial setup = 3 s
[2025-11-22 08:59:22] 2025-11-22 16:58:44,143 | INFO     | . payload setup = 10 s
[2025-11-22 08:59:22] 2025-11-22 16:58:44,144 | INFO     | . stage-in = 0 s
[2025-11-22 08:59:22] 2025-11-22 16:58:44,144 | INFO     | . payload execution = 109 s
[2025-11-22 08:59:22] 2025-11-22 16:58:44,144 | INFO     | . stage-out = 0 s
[2025-11-22 08:59:22] 2025-11-22 16:58:44,144 | INFO     | . log creation = 0 s
[2025-11-22 08:59:22] 2025-11-22 16:58:44,144 | INFO     | ..............................
[2025-11-22 08:59:22] 2025-11-22 16:58:44,144 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 08:59:22] 2025-11-22 16:58:44,144 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895336436/pilotlog.txt
[2025-11-22 08:59:22] 2025-11-22 16:58:44,165 | WARNING  | 
[2025-11-22 08:59:22] [begin log extracts]
[2025-11-22 08:59:22] - Log from pilotlog.txt -
[2025-11-22 08:59:22] 2025-11-22 16:58:44,139 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895336436/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 08:59:22] 2025-11-22 16:58:44,140 | INFO     | extracted standard info from prmon json
[2025-11-22 08:59:22] 2025-11-22 16:58:44,140 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 08:59:22] 2025-11-22 16:58:44,140 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 08:59:22] 2025-11-22 16:58:44,141 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 08:59:22] 2025-11-22 16:58:44,141 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 08:59:22] 2025-11-22 16:58:44,142 | WARNING  | wrong length of table data, x=[1763830497.0, 1763830558.0], y=[1612.0, 370739.0] (must be same and length>=4)
[2025-11-22 08:59:22] 2025-11-22 16:58:44,143 | INFO     | could have reported an average CPU frequency of 1508 MHz (4 samples)
[2025-11-22 08:59:22] 2025-11-22 16:58:44,143 | INFO     | ..............................
[2025-11-22 08:59:22] 2025-11-22 16:58:44,143 | INFO     | . Timing measurements:
[2025-11-22 08:59:22] 2025-11-22 16:58:44,143 | INFO     | . get job = 0 s
[2025-11-22 08:59:22] 2025-11-22 16:58:44,143 | INFO     | . initial setup = 3 s
[2025-11-22 08:59:22] 2025-11-22 16:58:44,143 | INFO     | . payload setup = 10 s
[2025-11-22 08:59:22] 2025-11-22 16:58:44,144 | INFO     | . stage-in = 0 s
[2025-11-22 08:59:22] 2025-11-22 16:58:44,144 | INFO     | . payload execution = 109 s
[2025-11-22 08:59:22] 2025-11-22 16:58:44,144 | INFO     | . stage-out = 0 s
[2025-11-22 08:59:22] 2025-11-22 16:58:44,144 | INFO     | . log creation = 0 s
[2025-11-22 08:59:22] 2025-11-22 16:58:44,144 | INFO     | ..............................
[2025-11-22 08:59:22] 2025-11-22 16:58:44,144 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 08:59:22] 2025-11-22 16:58:44,144 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895336436/pilotlog.txt
[2025-11-22 08:59:22] [end log extracts]
[2025-11-22 08:59:22] 2025-11-22 16:58:44,166 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-22 08:59:22] 2025-11-22 16:58:44,167 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-22 08:59:22] 2025-11-22 16:58:44,260 | INFO     | 
[2025-11-22 08:59:22] 2025-11-22 16:58:44,261 | INFO     | job summary report
[2025-11-22 08:59:22] 2025-11-22 16:58:44,261 | INFO     | --------------------------------------------------
[2025-11-22 08:59:22] 2025-11-22 16:58:44,261 | INFO     | PanDA job id: 6895336436
[2025-11-22 08:59:22] 2025-11-22 16:58:44,261 | INFO     | task id: 47556137
[2025-11-22 08:59:22] 2025-11-22 16:58:44,261 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-22 08:56:32,057 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-22 08:59:22] 2025-11-22 16:58:44,261 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-22 08:59:22] 2025-11-22 16:58:44,262 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 08:59:22] 2025-11-22 16:58:44,262 | INFO     | pilot state: failed 
[2025-11-22 08:59:22] 2025-11-22 16:58:44,262 | INFO     | transexitcode: 65
[2025-11-22 08:59:22] 2025-11-22 16:58:44,262 | INFO     | exeerrorcode: 65
[2025-11-22 08:59:22] 2025-11-22 16:58:44,262 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-22 08:59:22] 2025-11-22 16:58:44,262 | INFO     | exitcode: 65
[2025-11-22 08:59:22] 2025-11-22 16:58:44,262 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-22 08:59:22] 2025-11-22 16:58:44,262 | INFO     | cpuconsumptiontime: 57 s
[2025-11-22 08:59:22] 2025-11-22 16:58:44,262 | INFO     | nevents: 0
[2025-11-22 08:59:22] 2025-11-22 16:58:44,262 | INFO     | neventsw: 0
[2025-11-22 08:59:22] 2025-11-22 16:58:44,262 | INFO     | pid: 216686
[2025-11-22 08:59:22] 2025-11-22 16:58:44,262 | INFO     | pgrp: 216686
[2025-11-22 08:59:22] 2025-11-22 16:58:44,262 | INFO     | corecount: 12
[2025-11-22 08:59:22] 2025-11-22 16:58:44,263 | INFO     | event service: False
[2025-11-22 08:59:22] 2025-11-22 16:58:44,263 | INFO     | sizes: {0: 2298627, 1: 2298826, 9: 2299088, 11: 2299116, 120: 2324617, 121: 2328907, 122: 2329063, 248: 2329229}
[2025-11-22 08:59:22] 2025-11-22 16:58:44,263 | INFO     | --------------------------------------------------
[2025-11-22 08:59:22] 2025-11-22 16:58:44,263 | INFO     | 
[2025-11-22 08:59:22] 2025-11-22 16:58:44,263 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-22 08:59:22] 2025-11-22 16:58:44,299 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 08:59:22] 2025-11-22 16:58:44,301 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 08:59:22] 2025-11-22 16:58:44,301 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 08:59:22] 2025-11-22 16:58:44,302 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 08:59:22] 2025-11-22 16:58:44,302 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 08:59:22] 2025-11-22 16:58:44,302 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 08:59:22] 2025-11-22 16:58:44,302 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 08:59:22] 2025-11-22 16:58:44,302 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 08:59:22] 2025-11-22 16:58:44,302 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 08:59:22] 2025-11-22 16:58:44,302 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 08:59:22] 2025-11-22 16:58:44,302 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 08:59:22] 2025-11-22 16:58:44,302 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 08:59:22] 2025-11-22 16:58:44,302 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 08:59:22] 2025-11-22 16:58:44,302 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 08:59:22] 2025-11-22 16:58:44,302 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 08:59:22] 2025-11-22 16:58:44,303 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 08:59:22] 2025-11-22 16:58:44,303 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 08:59:22] 2025-11-22 16:58:44,303 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 08:59:22] 2025-11-22 16:58:44,303 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 08:59:22] 2025-11-22 16:58:44,303 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 08:59:22] 2025-11-22 16:58:44,303 | INFO     | job 6895336436 has completed (purged errors)
[2025-11-22 08:59:22] 2025-11-22 16:58:44,303 | INFO     | overall cleanup function is called
[2025-11-22 08:59:22] 2025-11-22 16:58:45,312 | INFO     | --- collectZombieJob: --- 10, [216686]
[2025-11-22 08:59:22] 2025-11-22 16:58:45,312 | INFO     | zombie collector waiting for pid 216686
[2025-11-22 08:59:22] 2025-11-22 16:58:45,312 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 08:59:22] 2025-11-22 16:58:45,312 | INFO     | collected zombie processes
[2025-11-22 08:59:22] 2025-11-22 16:58:45,312 | INFO     | will attempt to kill all subprocesses of pid=216686
[2025-11-22 08:59:22] 2025-11-22 16:58:45,648 | INFO     | process IDs to be killed: [216686] (in reverse order)
[2025-11-22 08:59:22] 2025-11-22 16:58:45,777 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 08:59:22] 2025-11-22 16:58:45,778 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 08:59:22] 2025-11-22 16:58:45,793 | INFO     | did not find any defunct processes belonging to 216686
[2025-11-22 08:59:22] 2025-11-22 16:58:45,806 | INFO     | did not find any defunct processes belonging to 216686
[2025-11-22 08:59:22] 2025-11-22 16:58:45,807 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 08:59:22] 2025-11-22 16:58:45,807 | INFO     | ready for new job
[2025-11-22 08:59:22] 2025-11-22 16:58:45,807 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 08:59:22] 2025-11-22 16:58:45,809 | INFO     | ***************************************
[2025-11-22 08:59:22] 2025-11-22 16:58:45,809 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 08:59:22] 2025-11-22 16:58:45,809 | INFO     | ***************************************
[2025-11-22 08:59:22] 2025-11-22 16:58:45,809 | INFO     | 
[2025-11-22 08:59:22] 2025-11-22 16:58:45,812 | INFO     | architecture information:
[2025-11-22 08:59:22] 2025-11-22 16:58:45,813 | INFO     | executing command: cat /etc/os-release
[2025-11-22 08:59:22] 2025-11-22 16:58:45,831 | INFO     | cat /etc/os-release:
[2025-11-22 08:59:22] NAME="CentOS Linux"
[2025-11-22 08:59:22] VERSION="7 (Core)"
[2025-11-22 08:59:22] ID="centos"
[2025-11-22 08:59:22] ID_LIKE="rhel fedora"
[2025-11-22 08:59:22] VERSION_ID="7"
[2025-11-22 08:59:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 08:59:22] ANSI_COLOR="0;31"
[2025-11-22 08:59:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 08:59:22] HOME_URL="https://www.centos.org/"
[2025-11-22 08:59:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 08:59:22] 
[2025-11-22 08:59:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 08:59:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 08:59:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 08:59:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 08:59:22] 
[2025-11-22 08:59:22] 2025-11-22 16:58:45,831 | INFO     | ***************************************
[2025-11-22 08:59:22] 2025-11-22 16:58:46,342 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-22 08:59:22] 2025-11-22 16:58:46,366 | INFO     | sufficient remaining disk space (1562707492864 B)
[2025-11-22 08:59:22] 2025-11-22 16:58:46,369 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 08:59:22] 2025-11-22 16:58:46,370 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 08:59:22] 2025-11-22 16:58:46,370 | INFO     | update_server=False
[2025-11-22 08:59:22] 2025-11-22 16:58:46,370 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 08:59:22] 2025-11-22 16:58:46,370 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 08:59:22] 2025-11-22 16:58:46,371 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 08:59:22] 2025-11-22 16:58:46,516 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 08:59:22] 2025-11-22 16:58:46,516 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 08:59:22] 2025-11-22 16:58:46,516 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 08:59:22] 2025-11-22 16:58:46,516 | INFO     | will abort loop
[2025-11-22 08:59:22] 2025-11-22 16:58:46,759 | INFO     | all payload control threads have been joined
[2025-11-22 08:59:22] 2025-11-22 16:58:47,102 | INFO     | all job control threads have been joined
[2025-11-22 08:59:22] 2025-11-22 16:58:47,375 | INFO     | [job] retrieve thread has finished
[2025-11-22 08:59:22] 2025-11-22 16:58:47,441 | INFO     | all data control threads have been joined
[2025-11-22 08:59:22] 2025-11-22 16:58:47,521 | INFO     | [job] job monitor thread has finished
[2025-11-22 08:59:22] 2025-11-22 16:58:47,539 | INFO     | [payload] failed_post thread has finished
[2025-11-22 08:59:22] 2025-11-22 16:58:47,672 | INFO     | [payload] validate_post thread has finished
[2025-11-22 08:59:22] 2025-11-22 16:58:47,764 | INFO     | [payload] control thread has finished
[2025-11-22 08:59:22] 2025-11-22 16:58:47,804 | INFO     | [job] validate thread has finished
[2025-11-22 08:59:22] 2025-11-22 16:58:48,107 | INFO     | [job] control thread has finished
[2025-11-22 08:59:22] 2025-11-22 16:58:48,141 | INFO     | [data] copytool_in thread has finished
[2025-11-22 08:59:22] 2025-11-22 16:58:48,305 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 08:59:22] 2025-11-22 16:58:48,331 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 08:59:22] 2025-11-22 16:58:48,378 | INFO     | [data] copytool_out thread has finished
[2025-11-22 08:59:22] 2025-11-22 16:58:48,447 | INFO     | [data] control thread has finished
[2025-11-22 08:59:22] 2025-11-22 16:58:48,503 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 08:59:22] 2025-11-22 16:58:48,787 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 08:59:22] 2025-11-22 16:58:49,273 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 08:59:22] 2025-11-22 16:58:50,279 | INFO     | [job] queue monitor thread has finished
[2025-11-22 08:59:22] 2025-11-22 16:58:50,377 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 08:59:22] 2025-11-22 16:59:15,757 | INFO     | [monitor] cgroup control has ended
[2025-11-22 08:59:22] 2025-11-22 16:59:16,825 | INFO     | PID=210077 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 08:59:22] 2025-11-22 16:59:16,826 | INFO     | .. there are 35 such processes running
[2025-11-22 08:59:22] 2025-11-22 16:59:16,827 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 08:59:22] 2025-11-22 16:59:16,827 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 08:59:22] 2025-11-22 16:59:16,827 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 08:59:22] 2025-11-22 16:59:17,451 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140164997699392)>', '<ExcThread(monitor, started 140164244436736)>']
[2025-11-22 08:59:22] 2025-11-22 16:59:17,832 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 08:59:22] 2025-11-22 16:59:17,832 | INFO     | [monitor] control thread has ended
[2025-11-22 08:59:22] 2025-11-22 16:59:22,476 | INFO     | all workflow threads have been joined
[2025-11-22 08:59:22] 2025-11-22 16:59:22,476 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 08:59:22] 2025-11-22 16:59:22,477 | INFO     | traces error code: 0
[2025-11-22 08:59:22] 2025-11-22 16:59:22,477 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 08:59:22] 2025-11-22 16:59:22,631 [wrapper] ==== pilot stdout END ====
[2025-11-22 08:59:22] 2025-11-22 16:59:22,634 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 08:59:22] 2025-11-22 16:59:22,637 [wrapper] pilotpid: 210077
[2025-11-22 08:59:22] 2025-11-22 16:59:22,640 [wrapper] Pilot exit status: 0
[2025-11-22 08:59:22] 2025-11-22 16:59:22,652 [wrapper] pandaids: 6895336436
[2025-11-22 08:59:22] 2025-11-22 16:59:22,724 [wrapper] cleanup supervisor_pilot  210086 210078
[2025-11-22 08:59:22] 2025-11-22 16:59:22,728 [wrapper] Test setup, not cleaning
[2025-11-22 08:59:22] 2025-11-22 16:59:22,731 [wrapper] apfmon messages muted
[2025-11-22 08:59:22] 2025-11-22 16:59:22,737 [wrapper] ==== wrapper stdout END ====
[2025-11-22 08:59:22] 2025-11-22 16:59:22,740 [wrapper] ==== wrapper stderr END ====
[2025-11-22 08:59:22]  *** Error codes and diagnostics ***
[2025-11-22 08:59:22]     "exeErrorCode": 65,
[2025-11-22 08:59:22]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-22 08:59:22]     "pilotErrorCode": 1305,
[2025-11-22 08:59:22]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-22 08:59:22]  *** Listing of results directory ***
[2025-11-22 08:59:22] total 407048
[2025-11-22 08:59:22] -rw-r--r--. 1 boinc boinc    576529 Nov 21 21:12 pilot3.tar.gz
[2025-11-22 08:59:22] -rwx------. 1 boinc boinc     36292 Nov 21 21:33 runpilot2-wrapper.sh
[2025-11-22 08:59:22] -rw-r--r--. 1 boinc boinc      5112 Nov 21 21:33 queuedata.json
[2025-11-22 08:59:22] -rw-r--r--. 1 boinc boinc       100 Nov 22 08:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 08:59:22] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 08:53 run_atlas
[2025-11-22 08:59:22] -rw-r--r--. 1 boinc boinc       105 Nov 22 08:53 job.xml
[2025-11-22 08:59:22] -rw-r--r--. 2 boinc boinc 412594984 Nov 22 08:53 EVNT.47483658._000281.pool.root.1
[2025-11-22 08:59:22] -rw-r--r--. 1 boinc boinc      6595 Nov 22 08:53 init_data.xml
[2025-11-22 08:59:22] -rw-r--r--. 2 boinc boinc     15847 Nov 22 08:53 start_atlas.sh
[2025-11-22 08:59:22] drwxrwx--x. 2 boinc boinc      4096 Nov 22 08:53 shared
[2025-11-22 08:59:22] -rw-r--r--. 2 boinc boinc    590094 Nov 22 08:53 input.tar.gz
[2025-11-22 08:59:22] -rw-r--r--. 1 boinc boinc         0 Nov 22 08:53 boinc_lockfile
[2025-11-22 08:59:22] -rw-r--r--. 1 boinc boinc      2783 Nov 22 08:53 pandaJob.out
[2025-11-22 08:59:22] -rw-------. 1 boinc boinc    989768 Nov 22 08:54 agis_schedconf.cvmfs.json
[2025-11-22 08:59:22] -rw-------. 1 boinc boinc   1526164 Nov 22 08:54 agis_ddmendpoints.agis.ALL.json
[2025-11-22 08:59:22] drwx------. 5 boinc boinc      4096 Nov 22 08:54 pilot3
[2025-11-22 08:59:22] -rw-r--r--. 1 boinc boinc       524 Nov 22 08:56 boinc_task_state.xml
[2025-11-22 08:59:22] -rw-------. 1 boinc boinc      1006 Nov 22 08:56 memory_monitor_summary.json
[2025-11-22 08:59:22] -rw-------. 1 boinc boinc     48558 Nov 22 08:56 log.47556137._002771.job.log.tgz.1
[2025-11-22 08:59:22] -rw-------. 1 boinc boinc     10332 Nov 22 08:58 heartbeat.json
[2025-11-22 08:59:22] -rw-------. 1 boinc boinc        95 Nov 22 08:59 pilot_heartbeat.json
[2025-11-22 08:59:22] -rw-r--r--. 1 boinc boinc      8192 Nov 22 08:59 boinc_mmap_file
[2025-11-22 08:59:22] -rw-r--r--. 1 boinc boinc        23 Nov 22 08:59 wrapper_checkpoint.txt
[2025-11-22 08:59:22] -rw-------. 1 boinc boinc      5008 Nov 22 08:59 pilotlog.txt
[2025-11-22 08:59:22] -rw-------. 1 boinc boinc    100923 Nov 22 08:59 log.47556137._002771.job.log.1
[2025-11-22 08:59:22] -rw-------. 1 boinc boinc       186 Nov 22 08:59 output.list
[2025-11-22 08:59:22] -rw-r--r--. 1 boinc boinc       620 Nov 22 08:59 runtime_log
[2025-11-22 08:59:22] -rw-------. 1 boinc boinc    174080 Nov 22 08:59 result.tar.gz
[2025-11-22 08:59:22] -rw-------. 1 boinc boinc       645 Nov 22 08:59 x42LDmYQvg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm9yHKDmdbENem.diag
[2025-11-22 08:59:22] -rw-r--r--. 1 boinc boinc      8636 Nov 22 08:59 runtime_log.err
[2025-11-22 08:59:22] -rw-r--r--. 1 boinc boinc     22434 Nov 22 08:59 stderr.txt
[2025-11-22 08:59:22] No HITS result produced
[2025-11-22 08:59:22]  *** Contents of shared directory: ***
[2025-11-22 08:59:22] total 403700
[2025-11-22 08:59:22] -rw-r--r--. 2 boinc boinc 412594984 Nov 22 08:53 ATLAS.root_0
[2025-11-22 08:59:22] -rw-r--r--. 2 boinc boinc     15847 Nov 22 08:53 start_atlas.sh
[2025-11-22 08:59:22] -rw-r--r--. 2 boinc boinc    590094 Nov 22 08:53 input.tar.gz
[2025-11-22 08:59:22] -rw-------. 1 boinc boinc    174080 Nov 22 08:59 result.tar.gz
08:59:24 (206336): run_atlas exited; CPU time 68.354430
08:59:24 (206336): called boinc_finish(0)

</stderr_txt>
]]>

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