Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:28:16 (3029520): wrapper (7.7.26015): starting
22:28:16 (3029520): wrapper: running run_atlas (--nthreads 9)
[2025-11-22 22:28:16] Arguments: --nthreads 9
[2025-11-22 22:28:16] Threads: 9
[2025-11-22 22:28:16] Checking for CVMFS
[2025-11-22 22:28:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 22:28:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 22:28:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 22:28:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 22:28:18] 2.13.2.0 5664 28914 197956 153195 3 89 33049071 39288832 7309 16776704 0 20753736 99.616 17884459 32143 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 22:28:18] CVMFS is ok
[2025-11-22 22:28:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 22:28:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 22:28:18] Further information can be found at the LHC@home message board.
[2025-11-22 22:28:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 22:28:18] Checking for apptainer binary...
[2025-11-22 22:28:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 22:28:18] Running /usr/bin/apptainer --version
[2025-11-22 22:28:18] apptainer version 1.4.4-1.el9
[2025-11-22 22:28:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 22:28:19] c-210-30.aglt2.org
[2025-11-22 22:28:19] apptainer works
[2025-11-22 22:28:19] Set ATHENA_PROC_NUMBER=9
[2025-11-22 22:28:19] Set ATHENA_CORE_NUMBER=9
[2025-11-22 22:28:19] Starting ATLAS job with PandaID=6895328975
[2025-11-22 22:28:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 15:40:05]  *** The last 200 lines of the pilot log: ***
[2025-11-24 15:40:05] 2025-11-24 20:38:55,209 | INFO     | time since job start (148179s) is within the limit (172800.0s)
[2025-11-24 15:40:05] 2025-11-24 20:38:57,033 | INFO     | monitor loop #8864: job 0:6895328975 is in state 'finished'
[2025-11-24 15:40:05] 2025-11-24 20:38:57,034 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 15:40:05] 2025-11-24 20:38:57,216 | INFO     | time since job start (148181s) is within the limit (172800.0s)
[2025-11-24 15:40:05] 2025-11-24 20:38:59,223 | INFO     | time since job start (148183s) is within the limit (172800.0s)
[2025-11-24 15:40:05] 2025-11-24 20:38:59,538 | INFO     | monitor loop #8865: job 0:6895328975 is in state 'finished'
[2025-11-24 15:40:05] 2025-11-24 20:38:59,539 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 15:40:05] 2025-11-24 20:38:59,841 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 15:40:05] 2025-11-24 20:38:59,968 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.8503250000003
[2025-11-24 15:40:05] 2025-11-24 20:38:59,982 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895328975/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 15:40:05] 2025-11-24 20:38:59,983 | INFO     | extracted standard info from prmon json
[2025-11-24 15:40:05] 2025-11-24 20:38:59,983 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 15:40:05] 2025-11-24 20:38:59,983 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 15:40:05] 2025-11-24 20:39:01,356 | INFO     | fitting pss+swap vs Time
[2025-11-24 15:40:05] 2025-11-24 20:39:01,367 | INFO     | sum of square deviations: 4433139158600.108
[2025-11-24 15:40:05] 2025-11-24 20:39:02,095 | INFO     | monitor loop #8866: job 0:6895328975 is in state 'finished'
[2025-11-24 15:40:05] 2025-11-24 20:39:02,096 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 15:40:05] 2025-11-24 20:39:04,010 | INFO     | sum of deviations: 3923638538501.9824
[2025-11-24 15:40:05] 2025-11-24 20:39:04,011 | INFO     | mean x: 1763942648.8800988
[2025-11-24 15:40:05] 2025-11-24 20:39:04,011 | INFO     | mean y: 3090481.4672435103
[2025-11-24 15:40:05] 2025-11-24 20:39:04,011 | INFO     | intersect: -1558122264.003791
[2025-11-24 15:40:05] 2025-11-24 20:39:04,019 | INFO     | chi2: 40.78190083419218
[2025-11-24 15:40:05] 2025-11-24 20:39:04,034 | INFO     | sum of square deviations: 4405801783848.283
[2025-11-24 15:40:05] 2025-11-24 20:39:04,702 | INFO     | monitor loop #8867: job 0:6895328975 is in state 'finished'
[2025-11-24 15:40:05] 2025-11-24 20:39:04,703 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 15:40:05] 2025-11-24 20:39:05,910 | INFO     | sum of deviations: 4981070394876.538
[2025-11-24 15:40:05] 2025-11-24 20:39:05,911 | INFO     | mean x: 1763942496.3901734
[2025-11-24 15:40:05] 2025-11-24 20:39:05,911 | INFO     | mean y: 3096379.8893476464
[2025-11-24 15:40:05] 2025-11-24 20:39:05,911 | INFO     | intersect: -1991165318.2298138
[2025-11-24 15:40:05] 2025-11-24 20:39:05,963 | INFO     | chi2: 36.053353417600256
[2025-11-24 15:40:05] 2025-11-24 20:39:05,963 | INFO     | current chi2=36.053353417600256 (change=11.594720500686998 %)
[2025-11-24 15:40:05] 2025-11-24 20:39:05,963 | INFO     | right removable region: 2421
[2025-11-24 15:40:05] 2025-11-24 20:39:05,972 | INFO     | sum of square deviations: 4405794559008.285
[2025-11-24 15:40:05] 2025-11-24 20:39:07,444 | INFO     | monitor loop #8868: job 0:6895328975 is in state 'finished'
[2025-11-24 15:40:05] 2025-11-24 20:39:07,445 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 15:40:05] 2025-11-24 20:39:07,702 | INFO     | sum of deviations: 2912116548296.644
[2025-11-24 15:40:05] 2025-11-24 20:39:07,746 | INFO     | mean x: 1763942801.3901734
[2025-11-24 15:40:05] 2025-11-24 20:39:07,746 | INFO     | mean y: 3096122.6734104045
[2025-11-24 15:40:05] 2025-11-24 20:39:07,746 | INFO     | intersect: -1162824565.0432057
[2025-11-24 15:40:05] 2025-11-24 20:39:07,824 | INFO     | chi2: 37.02675284982579
[2025-11-24 15:40:05] 2025-11-24 20:39:07,825 | INFO     | current chi2=37.02675284982579 (change=9.207878758848862 %)
[2025-11-24 15:40:05] 2025-11-24 20:39:07,825 | INFO     | left removable region: 10
[2025-11-24 15:40:05] 2025-11-24 20:39:07,859 | INFO     | sum of square deviations: 4346041616196.1826
[2025-11-24 15:40:05] 2025-11-24 20:39:10,099 | INFO     | monitor loop #8869: job 0:6895328975 is in state 'finished'
[2025-11-24 15:40:05] 2025-11-24 20:39:10,100 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 15:40:05] 2025-11-24 20:39:10,295 | INFO     | sum of deviations: 3700736454143.253
[2025-11-24 15:40:05] 2025-11-24 20:39:10,295 | INFO     | mean x: 1763942770.911655
[2025-11-24 15:40:05] 2025-11-24 20:39:10,296 | INFO     | mean y: 3105954.5458316053
[2025-11-24 15:40:05] 2025-11-24 20:39:10,296 | INFO     | intersect: -1498924603.7921422
[2025-11-24 15:40:05] 2025-11-24 20:39:10,343 | INFO     | chi2: 30.35004692586638
[2025-11-24 15:40:05] 2025-11-24 20:39:10,344 | INFO     | current memory leak: 0.85 B/s (using 2411 data points, chi2=30.35)
[2025-11-24 15:40:05] 2025-11-24 20:39:10,354 | INFO     | could have reported an average CPU frequency of 2599 MHz (84 samples)
[2025-11-24 15:40:05] 2025-11-24 20:39:10,354 | INFO     | ..............................
[2025-11-24 15:40:05] 2025-11-24 20:39:10,355 | INFO     | . Timing measurements:
[2025-11-24 15:40:05] 2025-11-24 20:39:10,355 | INFO     | . get job = 0 s
[2025-11-24 15:40:05] 2025-11-24 20:39:10,355 | INFO     | . initial setup = 6 s
[2025-11-24 15:40:05] 2025-11-24 20:39:10,355 | INFO     | . payload setup = 28 s
[2025-11-24 15:40:05] 2025-11-24 20:39:10,355 | INFO     | . stage-in = 0 s
[2025-11-24 15:40:05] 2025-11-24 20:39:10,355 | INFO     | . payload execution = 148017 s
[2025-11-24 15:40:05] 2025-11-24 20:39:10,355 | INFO     | . stage-out = 30 s
[2025-11-24 15:40:05] 2025-11-24 20:39:10,355 | INFO     | . log creation = 8 s
[2025-11-24 15:40:05] 2025-11-24 20:39:10,355 | INFO     | ..............................
[2025-11-24 15:40:05] 2025-11-24 20:39:11,437 | INFO     | PID=3033518 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 15:40:05] 2025-11-24 20:39:11,438 | INFO     | .. there are 9 such processes running
[2025-11-24 15:40:05] 2025-11-24 20:39:11,453 | INFO     | 
[2025-11-24 15:40:05] 2025-11-24 20:39:11,463 | INFO     | job summary report
[2025-11-24 15:40:05] 2025-11-24 20:39:11,464 | INFO     | --------------------------------------------------
[2025-11-24 15:40:05] 2025-11-24 20:39:11,464 | INFO     | PanDA job id: 6895328975
[2025-11-24 15:40:05] 2025-11-24 20:39:11,464 | INFO     | task id: 47556149
[2025-11-24 15:40:05] 2025-11-24 20:39:11,464 | INFO     | errors: (none)
[2025-11-24 15:40:05] 2025-11-24 20:39:11,465 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 15:40:05] 2025-11-24 20:39:11,465 | INFO     | pilot state: finished 
[2025-11-24 15:40:05] 2025-11-24 20:39:11,465 | INFO     | transexitcode: 0
[2025-11-24 15:40:05] 2025-11-24 20:39:11,465 | INFO     | exeerrorcode: 0
[2025-11-24 15:40:05] 2025-11-24 20:39:11,465 | INFO     | exeerrordiag: 
[2025-11-24 15:40:05] 2025-11-24 20:39:11,465 | INFO     | exitcode: 0
[2025-11-24 15:40:05] 2025-11-24 20:39:11,465 | INFO     | exitmsg: OK
[2025-11-24 15:40:05] 2025-11-24 20:39:11,465 | INFO     | cpuconsumptiontime: 310926 s
[2025-11-24 15:40:05] 2025-11-24 20:39:11,465 | INFO     | nevents: 1000
[2025-11-24 15:40:05] 2025-11-24 20:39:11,466 | INFO     | neventsw: 0
[2025-11-24 15:40:05] 2025-11-24 20:39:11,466 | INFO     | pid: 3043108
[2025-11-24 15:40:05] 2025-11-24 20:39:11,466 | INFO     | pgrp: 3043108
[2025-11-24 15:40:05] 2025-11-24 20:39:11,466 | INFO     | corecount: 9
[2025-11-24 15:40:05] 2025-11-24 20:39:11,466 | INFO     | event service: False
[2025-11-24 15:40:05] 2025-11-24 20:39:11,466 | INFO     | sizes: {0: 2298634, 1: 2298833, 12: 2298833, 22: 2299123, 23: 2299151, 148052: 2393313, 148053: 2393440, 148086: 2403281, 148089: 2403337, 148154: 2403583}
[2025-11-24 15:40:05] 2025-11-24 20:39:11,466 | INFO     | --------------------------------------------------
[2025-11-24 15:40:05] 2025-11-24 20:39:11,466 | INFO     | 
[2025-11-24 15:40:05] 2025-11-24 20:39:11,467 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 15:40:05] 2025-11-24 20:39:11,741 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 15:40:05] 2025-11-24 20:39:11,742 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 15:40:05] 2025-11-24 20:39:11,742 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 15:40:05] 2025-11-24 20:39:11,742 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 15:40:05] 2025-11-24 20:39:11,742 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 15:40:05] 2025-11-24 20:39:11,742 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 15:40:05] 2025-11-24 20:39:11,742 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 15:40:05] 2025-11-24 20:39:11,743 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 15:40:05] 2025-11-24 20:39:11,743 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 15:40:05] 2025-11-24 20:39:11,743 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 15:40:05] 2025-11-24 20:39:11,743 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 15:40:05] 2025-11-24 20:39:11,743 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 15:40:05] 2025-11-24 20:39:11,743 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 15:40:05] 2025-11-24 20:39:11,743 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 15:40:05] 2025-11-24 20:39:11,743 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 15:40:05] 2025-11-24 20:39:11,744 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 15:40:05] 2025-11-24 20:39:11,744 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 15:40:05] 2025-11-24 20:39:11,744 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 15:40:05] 2025-11-24 20:39:11,744 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 15:40:05] 2025-11-24 20:39:11,744 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 15:40:05] 2025-11-24 20:39:11,744 | INFO     | job 6895328975 has completed (purged errors)
[2025-11-24 15:40:05] 2025-11-24 20:39:11,745 | INFO     | overall cleanup function is called
[2025-11-24 15:40:05] 2025-11-24 20:39:13,172 | INFO     | --- collectZombieJob: --- 10, [3043108]
[2025-11-24 15:40:05] 2025-11-24 20:39:13,173 | INFO     | zombie collector waiting for pid 3043108
[2025-11-24 15:40:05] 2025-11-24 20:39:13,173 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 15:40:05] 2025-11-24 20:39:13,173 | INFO     | collected zombie processes
[2025-11-24 15:40:05] 2025-11-24 20:39:13,173 | INFO     | will attempt to kill all subprocesses of pid=3043108
[2025-11-24 15:40:05] 2025-11-24 20:39:14,630 | INFO     | process IDs to be killed: [3043108] (in reverse order)
[2025-11-24 15:40:05] 2025-11-24 20:39:14,818 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 15:40:05] 2025-11-24 20:39:14,819 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 15:40:05] 2025-11-24 20:39:14,923 | INFO     | did not find any defunct processes belonging to 3043108
[2025-11-24 15:40:05] 2025-11-24 20:39:15,046 | INFO     | did not find any defunct processes belonging to 3043108
[2025-11-24 15:40:05] 2025-11-24 20:39:15,103 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 15:40:05] 2025-11-24 20:39:15,103 | INFO     | ready for new job
[2025-11-24 15:40:05] 2025-11-24 20:39:15,103 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 15:40:05] 2025-11-24 20:39:15,308 | INFO     | ***************************************
[2025-11-24 15:40:05] 2025-11-24 20:39:15,309 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 15:40:05] 2025-11-24 20:39:15,309 | INFO     | ***************************************
[2025-11-24 15:40:05] 2025-11-24 20:39:15,309 | INFO     | 
[2025-11-24 15:40:05] 2025-11-24 20:39:15,366 | INFO     | architecture information:
[2025-11-24 15:40:05] 2025-11-24 20:39:15,395 | INFO     | executing command: cat /etc/os-release
[2025-11-24 15:40:05] 2025-11-24 20:39:15,478 | INFO     | cat /etc/os-release:
[2025-11-24 15:40:05] NAME="CentOS Linux"
[2025-11-24 15:40:05] VERSION="7 (Core)"
[2025-11-24 15:40:05] ID="centos"
[2025-11-24 15:40:05] ID_LIKE="rhel fedora"
[2025-11-24 15:40:05] VERSION_ID="7"
[2025-11-24 15:40:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 15:40:05] ANSI_COLOR="0;31"
[2025-11-24 15:40:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 15:40:05] HOME_URL="https://www.centos.org/"
[2025-11-24 15:40:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 15:40:05] 
[2025-11-24 15:40:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 15:40:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 15:40:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 15:40:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 15:40:05] 
[2025-11-24 15:40:05] 2025-11-24 20:39:15,478 | INFO     | ***************************************
[2025-11-24 15:40:05] 2025-11-24 20:39:16,012 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 15:40:05] 2025-11-24 20:39:16,264 | INFO     | sufficient remaining disk space (49334452224 B)
[2025-11-24 15:40:05] 2025-11-24 20:39:16,265 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 15:40:05] 2025-11-24 20:39:16,265 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 15:40:05] 2025-11-24 20:39:16,265 | INFO     | update_server=False
[2025-11-24 15:40:05] 2025-11-24 20:39:16,265 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 15:40:05] 2025-11-24 20:39:16,282 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 15:40:05] 2025-11-24 20:39:16,283 | INFO     | aborting loop
[2025-11-24 15:40:05] 2025-11-24 20:39:16,463 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 15:40:05] 2025-11-24 20:39:16,471 | INFO     | all payload control threads have been joined
[2025-11-24 15:40:05] 2025-11-24 20:39:16,636 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 15:40:05] 2025-11-24 20:39:16,743 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 15:40:05] 2025-11-24 20:39:17,116 | INFO     | all job control threads have been joined
[2025-11-24 15:40:05] 2025-11-24 20:39:17,271 | INFO     | [job] retrieve thread has finished
[2025-11-24 15:40:05] 2025-11-24 20:39:17,275 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 15:40:05] 2025-11-24 20:39:17,278 | INFO     | all data control threads have been joined
[2025-11-24 15:40:05] 2025-11-24 20:39:17,316 | INFO     | [job] job monitor thread has finished
[2025-11-24 15:40:05] 2025-11-24 20:39:17,320 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 15:40:05] 2025-11-24 20:39:17,444 | INFO     | [job] validate thread has finished
[2025-11-24 15:40:05] 2025-11-24 20:39:17,476 | INFO     | [job] queue monitor thread has finished
[2025-11-24 15:40:05] 2025-11-24 20:39:17,490 | INFO     | [payload] control thread has finished
[2025-11-24 15:40:05] 2025-11-24 20:39:17,540 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 15:40:05] 2025-11-24 20:39:18,091 | INFO     | [payload] validate_post thread has finished
[2025-11-24 15:40:05] 2025-11-24 20:39:18,107 | INFO     | [data] copytool_in thread has finished
[2025-11-24 15:40:05] 2025-11-24 20:39:18,125 | INFO     | [job] control thread has finished
[2025-11-24 15:40:05] 2025-11-24 20:39:18,235 | INFO     | [payload] failed_post thread has finished
[2025-11-24 15:40:05] 2025-11-24 20:39:18,284 | INFO     | [data] control thread has finished
[2025-11-24 15:40:05] 2025-11-24 20:39:18,682 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 15:40:05] 2025-11-24 20:39:18,705 | INFO     | [data] copytool_out thread has finished
[2025-11-24 15:40:05] 2025-11-24 20:39:20,755 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 15:40:05] 2025-11-24 20:39:47,403 | INFO     | PID=3033518 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 15:40:05] 2025-11-24 20:39:47,403 | INFO     | .. there are 9 such processes running
[2025-11-24 15:40:05] 2025-11-24 20:39:47,403 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 15:40:05] 2025-11-24 20:39:47,403 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 15:40:05] 2025-11-24 20:39:47,403 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 15:40:05] 2025-11-24 20:39:57,977 | INFO     | [monitor] cgroup control has ended
[2025-11-24 15:40:05] 2025-11-24 20:39:59,514 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140066420852544)>', '<ExcThread(monitor, started 140065762162432)>']
[2025-11-24 15:40:05] 2025-11-24 20:40:00,481 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 15:40:05] 2025-11-24 20:40:00,482 | INFO     | [monitor] control thread has ended
[2025-11-24 15:40:05] 2025-11-24 20:40:04,627 | INFO     | all workflow threads have been joined
[2025-11-24 15:40:05] 2025-11-24 20:40:04,628 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 15:40:05] 2025-11-24 20:40:04,628 | INFO     | traces error code: 0
[2025-11-24 15:40:05] 2025-11-24 20:40:04,628 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 15:40:05] 2025-11-24 20:40:04,920 [wrapper] ==== pilot stdout END ====
[2025-11-24 15:40:05] 2025-11-24 20:40:04,938 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 15:40:05] 2025-11-24 20:40:04,970 [wrapper] pilotpid: 3033518
[2025-11-24 15:40:05] 2025-11-24 20:40:04,998 [wrapper] Pilot exit status: 0
[2025-11-24 15:40:05] 2025-11-24 20:40:05,147 [wrapper] pandaids: 6895328975
[2025-11-24 15:40:05] 2025-11-24 20:40:05,330 [wrapper] cleanup supervisor_pilot 2728814 3033519
[2025-11-24 15:40:05] 2025-11-24 20:40:05,343 [wrapper] Test setup, not cleaning
[2025-11-24 15:40:05] 2025-11-24 20:40:05,361 [wrapper] apfmon messages muted
[2025-11-24 15:40:05] 2025-11-24 20:40:05,372 [wrapper] ==== wrapper stdout END ====
[2025-11-24 15:40:05] 2025-11-24 20:40:05,395 [wrapper] ==== wrapper stderr END ====
[2025-11-24 15:40:05]  *** Error codes and diagnostics ***
[2025-11-24 15:40:05]     "exeErrorCode": 0,
[2025-11-24 15:40:05]     "exeErrorDiag": "",
[2025-11-24 15:40:05]     "pilotErrorCode": 0,
[2025-11-24 15:40:05]     "pilotErrorDiag": "",
[2025-11-24 15:40:05]  *** Listing of results directory ***
[2025-11-24 15:40:05] total 1340396
[2025-11-24 15:40:05] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 13:11 pilot3.tar.gz
[2025-11-24 15:40:05] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 13:25 queuedata.json
[2025-11-24 15:40:05] -rwx------. 1 boincer umatlas     36292 Nov 21 13:26 runpilot2-wrapper.sh
[2025-11-24 15:40:05] -rw-r--r--. 1 boincer umatlas       100 Nov 22 22:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 15:40:05] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 22:28 run_atlas
[2025-11-24 15:40:05] -rw-r--r--. 1 boincer umatlas       105 Nov 22 22:28 job.xml
[2025-11-24 15:40:05] -rw-r--r--. 2 boincer umatlas 410124815 Nov 22 22:28 EVNT.47483658._001033.pool.root.1
[2025-11-24 15:40:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 22:28 start_atlas.sh
[2025-11-24 15:40:05] drwxrwx--x. 2 boincer umatlas      4096 Nov 22 22:28 shared
[2025-11-24 15:40:05] -rw-r--r--. 2 boincer umatlas    590101 Nov 22 22:28 input.tar.gz
[2025-11-24 15:40:05] -rw-r--r--. 1 boincer umatlas         0 Nov 22 22:28 boinc_lockfile
[2025-11-24 15:40:05] -rw-r--r--. 1 boincer umatlas      2785 Nov 22 22:28 pandaJob.out
[2025-11-24 15:40:05] -rw-------. 1 boincer umatlas        57 Nov 22 22:28 setup.sh.local
[2025-11-24 15:40:05] -rw-------. 1 boincer umatlas    989784 Nov 22 22:29 agis_schedconf.cvmfs.json
[2025-11-24 15:40:05] drwx------. 5 boincer umatlas      4096 Nov 22 22:29 pilot3
[2025-11-24 15:40:05] -rw-r--r--. 1 boincer umatlas       534 Nov 24 14:14 boinc_task_state.xml
[2025-11-24 15:40:05] -rw-------. 1 boincer umatlas 914758055 Nov 24 15:31 HITS.47556149._000194.pool.root.1
[2025-11-24 15:40:05] -rw-------. 1 boincer umatlas      1058 Nov 24 15:37 memory_monitor_summary.json
[2025-11-24 15:40:05] -rw-------. 1 boincer umatlas   1516227 Nov 24 15:37 agis_ddmendpoints.agis.ALL.json
[2025-11-24 15:40:05] -rw-r--r--. 1 boincer umatlas      6663 Nov 24 15:37 init_data.xml
[2025-11-24 15:40:05] -rw-------. 1 boincer umatlas   3274817 Nov 24 15:38 log.47556149._000194.job.log.tgz.1
[2025-11-24 15:40:05] -rw-------. 1 boincer umatlas      8620 Nov 24 15:39 heartbeat.json
[2025-11-24 15:40:05] -rw-------. 1 boincer umatlas        95 Nov 24 15:39 pilot_heartbeat.json
[2025-11-24 15:40:05] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 15:40 boinc_mmap_file
[2025-11-24 15:40:05] -rw-------. 1 boincer umatlas      4823 Nov 24 15:40 pilotlog.txt
[2025-11-24 15:40:05] -rw-r--r--. 1 boincer umatlas        30 Nov 24 15:40 wrapper_checkpoint.txt
[2025-11-24 15:40:05] -rw-------. 1 boincer umatlas  18605074 Nov 24 15:40 log.47556149._000194.job.log.1
[2025-11-24 15:40:05] -rw-------. 1 boincer umatlas       353 Nov 24 15:40 output.list
[2025-11-24 15:40:05] -rw-r--r--. 1 boincer umatlas       620 Nov 24 15:40 runtime_log
[2025-11-24 15:40:05] -rw-------. 1 boincer umatlas  21903360 Nov 24 15:40 result.tar.gz
[2025-11-24 15:40:05] -rw-r--r--. 1 boincer umatlas      9344 Nov 24 15:40 runtime_log.err
[2025-11-24 15:40:05] -rw-------. 1 boincer umatlas       663 Nov 24 15:40 oQsNDmm0kg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6cJKDmLlmqNm.diag
[2025-11-24 15:40:05] -rw-r--r--. 1 boincer umatlas     21906 Nov 24 15:40 stderr.txt
[2025-11-24 15:40:06] HITS file was successfully produced:
[2025-11-24 15:40:06] -rw-------. 1 boincer umatlas 914758055 Nov 24 15:31 shared/HITS.pool.root.1
[2025-11-24 15:40:06]  *** Contents of shared directory: ***
[2025-11-24 15:40:06] total 1315828
[2025-11-24 15:40:06] -rw-r--r--. 2 boincer umatlas 410124815 Nov 22 22:28 ATLAS.root_0
[2025-11-24 15:40:06] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 22:28 start_atlas.sh
[2025-11-24 15:40:06] -rw-r--r--. 2 boincer umatlas    590101 Nov 22 22:28 input.tar.gz
[2025-11-24 15:40:06] -rw-------. 1 boincer umatlas 914758055 Nov 24 15:31 HITS.pool.root.1
[2025-11-24 15:40:06] -rw-------. 1 boincer umatlas  21903360 Nov 24 15:40 result.tar.gz
15:40:07 (3029520): run_atlas exited; CPU time 312740.874990
15:40:07 (3029520): called boinc_finish(0)

</stderr_txt>
]]>

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