Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:14:48 (31368): wrapper (7.7.26015): starting
12:14:48 (31368): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 12:14:48] Arguments: --nthreads 8
[2025-11-22 12:14:48] Threads: 8
[2025-11-22 12:14:48] Checking for CVMFS
[2025-11-22 12:14:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 12:14:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 12:14:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 12:14:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 12:14:48] 2.11.2.0 2856 139245 80428 153179 0 71 10674298 20275201 1 130560 0 51242254 99.953 5575685 33634 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 12:14:48] CVMFS is ok
[2025-11-22 12:14:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 12:14:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 12:14:48] Further information can be found at the LHC@home message board.
[2025-11-22 12:14:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 12:14:48] Checking for apptainer binary...
[2025-11-22 12:14:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 12:14:48] Running /usr/bin/apptainer --version
[2025-11-22 12:14:49] apptainer version 1.3.2-1.el7
[2025-11-22 12:14:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 12:14:50] c-115-6.aglt2.org
[2025-11-22 12:14:50] apptainer works
[2025-11-22 12:14:50] Set ATHENA_PROC_NUMBER=8
[2025-11-22 12:14:50] Set ATHENA_CORE_NUMBER=8
[2025-11-22 12:14:50] Starting ATLAS job with PandaID=6895328961
[2025-11-22 12:14:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 23:23:18]  *** The last 200 lines of the pilot log: ***
[2025-11-22 23:23:18] 2025-11-23 04:22:42,188 | INFO     | monitor loop #2952: job 0:6895328961 is in state 'finished'
[2025-11-22 23:23:18] 2025-11-23 04:22:42,188 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:23:18] 2025-11-23 04:22:42,262 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-22 23:23:18] 2025-11-23 04:22:42,265 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1729.125
[2025-11-22 23:23:18] 2025-11-23 04:22:42,266 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895328961/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 23:23:18] 2025-11-23 04:22:42,267 | INFO     | extracted standard info from prmon json
[2025-11-22 23:23:18] 2025-11-23 04:22:42,267 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 23:23:18] 2025-11-23 04:22:42,267 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 23:23:18] 2025-11-23 04:22:42,277 | INFO     | fitting pss+swap vs Time
[2025-11-22 23:23:18] 2025-11-23 04:22:42,278 | INFO     | sum of square deviations: 87536174161.19519
[2025-11-22 23:23:18] 2025-11-23 04:22:42,288 | INFO     | sum of deviations: 488377826042.5731
[2025-11-22 23:23:18] 2025-11-23 04:22:42,288 | INFO     | mean x: 1763851716.1158535
[2025-11-22 23:23:18] 2025-11-23 04:22:42,289 | INFO     | mean y: 3138484.387195122
[2025-11-22 23:23:18] 2025-11-23 04:22:42,289 | INFO     | intersect: -9837662473.98954
[2025-11-22 23:23:18] 2025-11-23 04:22:42,289 | INFO     | chi2: 6.255680627825667
[2025-11-22 23:23:18] 2025-11-23 04:22:42,290 | INFO     | sum of square deviations: 85549915949.28423
[2025-11-22 23:23:18] 2025-11-23 04:22:42,298 | INFO     | sum of deviations: 721389985133.6267
[2025-11-22 23:23:18] 2025-11-23 04:22:42,298 | INFO     | mean x: 1763851563.6205838
[2025-11-22 23:23:18] 2025-11-23 04:22:42,298 | INFO     | mean y: 3156369.0875576036
[2025-11-22 23:23:18] 2025-11-23 04:22:42,299 | INFO     | intersect: -14870322337.922478
[2025-11-22 23:23:18] 2025-11-23 04:22:42,299 | INFO     | chi2: 3.211074571876874
[2025-11-22 23:23:18] 2025-11-23 04:22:42,299 | INFO     | current chi2=3.211074571876874 (change=48.66946119989232 %)
[2025-11-22 23:23:18] 2025-11-23 04:22:42,300 | INFO     | sum of square deviations: 83593937374.8438
[2025-11-22 23:23:18] 2025-11-23 04:22:42,310 | INFO     | sum of deviations: 818429749000.7625
[2025-11-22 23:23:18] 2025-11-23 04:22:42,310 | INFO     | mean x: 1763851411.125387
[2025-11-22 23:23:18] 2025-11-23 04:22:42,310 | INFO     | mean y: 3163925.447368421
[2025-11-22 23:23:18] 2025-11-23 04:22:42,310 | INFO     | intersect: -17265893054.232777
[2025-11-22 23:23:18] 2025-11-23 04:22:42,311 | INFO     | chi2: 2.5741842540329443
[2025-11-22 23:23:18] 2025-11-23 04:22:42,311 | INFO     | current chi2=2.5741842540329443 (change=19.83418022807446 %)
[2025-11-22 23:23:18] 2025-11-23 04:22:42,311 | INFO     | right removable region: 645
[2025-11-22 23:23:18] 2025-11-23 04:22:42,312 | INFO     | sum of square deviations: 85549669509.2842
[2025-11-22 23:23:18] 2025-11-23 04:22:42,322 | INFO     | sum of deviations: 289966308015.78986
[2025-11-22 23:23:18] 2025-11-23 04:22:42,323 | INFO     | mean x: 1763851868.6205838
[2025-11-22 23:23:18] 2025-11-23 04:22:42,323 | INFO     | mean y: 3153686.4485407067
[2025-11-22 23:23:18] 2025-11-23 04:22:42,323 | INFO     | intersect: -5975333631.672042
[2025-11-22 23:23:18] 2025-11-23 04:22:42,324 | INFO     | chi2: 3.886605802604451
[2025-11-22 23:23:18] 2025-11-23 04:22:42,324 | INFO     | current chi2=3.886605802604451 (change=37.87077643771358 %)
[2025-11-22 23:23:18] 2025-11-23 04:22:42,325 | INFO     | sum of square deviations: 83593603583.82162
[2025-11-22 23:23:18] 2025-11-23 04:22:42,335 | INFO     | sum of deviations: 252135149263.4719
[2025-11-22 23:23:18] 2025-11-23 04:22:42,335 | INFO     | mean x: 1763852021.119195
[2025-11-22 23:23:18] 2025-11-23 04:22:42,335 | INFO     | mean y: 3156633.2925696597
[2025-11-22 23:23:18] 2025-11-23 04:22:42,335 | INFO     | intersect: -5316976409.872899
[2025-11-22 23:23:18] 2025-11-23 04:22:42,336 | INFO     | chi2: 3.841561403132011
[2025-11-22 23:23:18] 2025-11-23 04:22:42,336 | INFO     | current chi2=3.841561403132011 (change=1.1589649622366036 %)
[2025-11-22 23:23:18] 2025-11-23 04:22:42,336 | INFO     | left removable region: 20
[2025-11-22 23:23:18] 2025-11-23 04:22:42,337 | INFO     | sum of square deviations: 75703715012.13768
[2025-11-22 23:23:18] 2025-11-23 04:22:42,345 | INFO     | sum of deviations: 551720536534.6161
[2025-11-22 23:23:18] 2025-11-23 04:22:42,345 | INFO     | mean x: 1763851990.6272
[2025-11-22 23:23:18] 2025-11-23 04:22:42,345 | INFO     | mean y: 3186820.552
[2025-11-22 23:23:18] 2025-11-23 04:22:42,345 | INFO     | intersect: -12851576865.489859
[2025-11-22 23:23:18] 2025-11-23 04:22:42,346 | INFO     | chi2: 0.08046308917316447
[2025-11-22 23:23:18] 2025-11-23 04:22:42,346 | INFO     | current memory leak: 7.29 B/s (using 625 data points, chi2=0.08)
[2025-11-22 23:23:18] 2025-11-23 04:22:42,347 | INFO     | could have reported an average CPU frequency of 2391 MHz (25 samples)
[2025-11-22 23:23:18] 2025-11-23 04:22:42,347 | INFO     | ..............................
[2025-11-22 23:23:18] 2025-11-23 04:22:42,347 | INFO     | . Timing measurements:
[2025-11-22 23:23:18] 2025-11-23 04:22:42,347 | INFO     | . get job = 0 s
[2025-11-22 23:23:18] 2025-11-23 04:22:42,347 | INFO     | . initial setup = 2 s
[2025-11-22 23:23:18] 2025-11-23 04:22:42,348 | INFO     | . payload setup = 9 s
[2025-11-22 23:23:18] 2025-11-23 04:22:42,348 | INFO     | . stage-in = 0 s
[2025-11-22 23:23:18] 2025-11-23 04:22:42,348 | INFO     | . payload execution = 40015 s
[2025-11-22 23:23:18] 2025-11-23 04:22:42,348 | INFO     | . stage-out = 3 s
[2025-11-22 23:23:18] 2025-11-23 04:22:42,348 | INFO     | . log creation = 0 s
[2025-11-22 23:23:18] 2025-11-23 04:22:42,348 | INFO     | ..............................
[2025-11-22 23:23:18] 2025-11-23 04:22:42,437 | INFO     | 
[2025-11-22 23:23:18] 2025-11-23 04:22:42,437 | INFO     | job summary report
[2025-11-22 23:23:18] 2025-11-23 04:22:42,437 | INFO     | --------------------------------------------------
[2025-11-22 23:23:18] 2025-11-23 04:22:42,437 | INFO     | PanDA job id: 6895328961
[2025-11-22 23:23:18] 2025-11-23 04:22:42,437 | INFO     | task id: 47556137
[2025-11-22 23:23:18] 2025-11-23 04:22:42,437 | INFO     | errors: (none)
[2025-11-22 23:23:18] 2025-11-23 04:22:42,437 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 23:23:18] 2025-11-23 04:22:42,438 | INFO     | pilot state: finished 
[2025-11-22 23:23:18] 2025-11-23 04:22:42,438 | INFO     | transexitcode: 0
[2025-11-22 23:23:18] 2025-11-23 04:22:42,438 | INFO     | exeerrorcode: 0
[2025-11-22 23:23:18] 2025-11-23 04:22:42,438 | INFO     | exeerrordiag: 
[2025-11-22 23:23:18] 2025-11-23 04:22:42,438 | INFO     | exitcode: 0
[2025-11-22 23:23:18] 2025-11-23 04:22:42,438 | INFO     | exitmsg: OK
[2025-11-22 23:23:18] 2025-11-23 04:22:42,438 | INFO     | cpuconsumptiontime: 310164 s
[2025-11-22 23:23:18] 2025-11-23 04:22:42,438 | INFO     | nevents: 1000
[2025-11-22 23:23:18] 2025-11-23 04:22:42,438 | INFO     | neventsw: 0
[2025-11-22 23:23:18] 2025-11-23 04:22:42,439 | INFO     | pid: 9355
[2025-11-22 23:23:18] 2025-11-23 04:22:42,439 | INFO     | pgrp: 9355
[2025-11-22 23:23:18] 2025-11-23 04:22:42,439 | INFO     | corecount: 8
[2025-11-22 23:23:18] 2025-11-23 04:22:42,439 | INFO     | event service: False
[2025-11-22 23:23:18] 2025-11-23 04:22:42,439 | INFO     | sizes: {0: 2298803, 6: 2299065, 11: 2299093, 40028: 2342595, 40032: 2351645, 40039: 2351899}
[2025-11-22 23:23:18] 2025-11-23 04:22:42,439 | INFO     | --------------------------------------------------
[2025-11-22 23:23:18] 2025-11-23 04:22:42,439 | INFO     | 
[2025-11-22 23:23:18] 2025-11-23 04:22:42,439 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 23:23:18] 2025-11-23 04:22:42,467 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 23:23:18] 2025-11-23 04:22:42,467 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 23:23:18] 2025-11-23 04:22:42,467 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 23:23:18] 2025-11-23 04:22:42,468 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 23:23:18] 2025-11-23 04:22:42,468 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 23:23:18] 2025-11-23 04:22:42,468 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 23:23:18] 2025-11-23 04:22:42,468 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 23:23:18] 2025-11-23 04:22:42,468 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 23:23:18] 2025-11-23 04:22:42,468 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 23:23:18] 2025-11-23 04:22:42,468 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 23:23:18] 2025-11-23 04:22:42,468 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 23:23:18] 2025-11-23 04:22:42,469 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 23:23:18] 2025-11-23 04:22:42,469 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 23:23:18] 2025-11-23 04:22:42,469 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 23:23:18] 2025-11-23 04:22:42,469 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 23:23:18] 2025-11-23 04:22:42,469 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 23:23:18] 2025-11-23 04:22:42,469 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 23:23:18] 2025-11-23 04:22:42,469 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 23:23:18] 2025-11-23 04:22:42,469 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 23:23:18] 2025-11-23 04:22:42,470 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 23:23:18] 2025-11-23 04:22:42,470 | INFO     | job 6895328961 has completed (purged errors)
[2025-11-22 23:23:18] 2025-11-23 04:22:42,470 | INFO     | overall cleanup function is called
[2025-11-22 23:23:18] 2025-11-23 04:22:43,484 | INFO     | --- collectZombieJob: --- 10, [9355]
[2025-11-22 23:23:18] 2025-11-23 04:22:43,485 | INFO     | zombie collector waiting for pid 9355
[2025-11-22 23:23:18] 2025-11-23 04:22:43,485 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 23:23:18] 2025-11-23 04:22:43,485 | INFO     | collected zombie processes
[2025-11-22 23:23:18] 2025-11-23 04:22:43,485 | INFO     | will attempt to kill all subprocesses of pid=9355
[2025-11-22 23:23:18] 2025-11-23 04:22:43,571 | INFO     | process IDs to be killed: [9355] (in reverse order)
[2025-11-22 23:23:18] 2025-11-23 04:22:43,633 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 23:23:18] 2025-11-23 04:22:43,634 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 23:23:18] 2025-11-23 04:22:43,638 | INFO     | did not find any defunct processes belonging to 9355
[2025-11-22 23:23:18] 2025-11-23 04:22:43,642 | INFO     | did not find any defunct processes belonging to 9355
[2025-11-22 23:23:18] 2025-11-23 04:22:43,645 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 23:23:18] 2025-11-23 04:22:43,645 | INFO     | ready for new job
[2025-11-22 23:23:18] 2025-11-23 04:22:43,645 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 23:23:18] 2025-11-23 04:22:43,648 | INFO     | ***************************************
[2025-11-22 23:23:18] 2025-11-23 04:22:43,648 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 23:23:18] 2025-11-23 04:22:43,648 | INFO     | ***************************************
[2025-11-22 23:23:18] 2025-11-23 04:22:43,648 | INFO     | 
[2025-11-22 23:23:18] 2025-11-23 04:22:43,649 | INFO     | architecture information:
[2025-11-22 23:23:18] 2025-11-23 04:22:43,649 | INFO     | executing command: cat /etc/os-release
[2025-11-22 23:23:18] 2025-11-23 04:22:43,668 | INFO     | cat /etc/os-release:
[2025-11-22 23:23:18] NAME="CentOS Linux"
[2025-11-22 23:23:18] VERSION="7 (Core)"
[2025-11-22 23:23:18] ID="centos"
[2025-11-22 23:23:18] ID_LIKE="rhel fedora"
[2025-11-22 23:23:18] VERSION_ID="7"
[2025-11-22 23:23:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 23:23:18] ANSI_COLOR="0;31"
[2025-11-22 23:23:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 23:23:18] HOME_URL="https://www.centos.org/"
[2025-11-22 23:23:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 23:23:18] 
[2025-11-22 23:23:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 23:23:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 23:23:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 23:23:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 23:23:18] 
[2025-11-22 23:23:18] 2025-11-23 04:22:43,669 | INFO     | ***************************************
[2025-11-22 23:23:18] 2025-11-23 04:22:44,172 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 23:23:18] 2025-11-23 04:22:44,193 | INFO     | sufficient remaining disk space (17466130432 B)
[2025-11-22 23:23:18] 2025-11-23 04:22:44,193 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 23:23:18] 2025-11-23 04:22:44,194 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 23:23:18] 2025-11-23 04:22:44,194 | INFO     | update_server=False
[2025-11-22 23:23:18] 2025-11-23 04:22:44,194 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 23:23:18] 2025-11-23 04:22:44,195 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 23:23:18] 2025-11-23 04:22:44,195 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:23:18] 2025-11-23 04:22:44,255 | INFO     | all data control threads have been joined
[2025-11-22 23:23:18] 2025-11-23 04:22:44,692 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 23:23:18] 2025-11-23 04:22:44,692 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 23:23:18] 2025-11-23 04:22:44,700 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:23:18] 2025-11-23 04:22:44,700 | INFO     | will abort loop
[2025-11-22 23:23:18] 2025-11-23 04:22:45,148 | INFO     | all payload control threads have been joined
[2025-11-22 23:23:18] 2025-11-23 04:22:45,200 | INFO     | [job] retrieve thread has finished
[2025-11-22 23:23:18] 2025-11-23 04:22:45,201 | INFO     | [job] queue monitor thread has finished
[2025-11-22 23:23:18] 2025-11-23 04:22:45,243 | INFO     | [payload] failed_post thread has finished
[2025-11-22 23:23:18] 2025-11-23 04:22:45,257 | INFO     | [data] control thread has finished
[2025-11-22 23:23:18] 2025-11-23 04:22:45,404 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 23:23:18] 2025-11-23 04:22:45,405 | INFO     | [data] copytool_in thread has finished
[2025-11-22 23:23:18] 2025-11-23 04:22:45,703 | INFO     | [job] job monitor thread has finished
[2025-11-22 23:23:18] 2025-11-23 04:22:45,752 | INFO     | all job control threads have been joined
[2025-11-22 23:23:18] 2025-11-23 04:22:45,763 | INFO     | [payload] validate_post thread has finished
[2025-11-22 23:23:18] 2025-11-23 04:22:46,154 | INFO     | [payload] control thread has finished
[2025-11-22 23:23:18] 2025-11-23 04:22:46,188 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 23:23:18] 2025-11-23 04:22:46,201 | INFO     | [data] copytool_out thread has finished
[2025-11-22 23:23:18] 2025-11-23 04:22:46,390 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 23:23:18] 2025-11-23 04:22:46,515 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 23:23:18] 2025-11-23 04:22:46,560 | INFO     | [job] validate thread has finished
[2025-11-22 23:23:18] 2025-11-23 04:22:46,632 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 23:23:18] 2025-11-23 04:22:46,758 | INFO     | [job] control thread has finished
[2025-11-22 23:23:18] 2025-11-23 04:22:50,638 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 23:23:18] 2025-11-23 04:23:13,090 | INFO     | [monitor] cgroup control has ended
[2025-11-22 23:23:18] 2025-11-23 04:23:13,448 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140462898009920)>', '<ExcThread(monitor, started 140461788354304)>']
[2025-11-22 23:23:18] 2025-11-23 04:23:15,145 | INFO     | PID=2835 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-22 23:23:18] 2025-11-23 04:23:15,145 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 23:23:18] 2025-11-23 04:23:15,145 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 23:23:18] 2025-11-23 04:23:15,145 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 23:23:18] 2025-11-23 04:23:15,145 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 23:23:18] 2025-11-23 04:23:15,146 | INFO     | [monitor] control thread has ended
[2025-11-22 23:23:18] 2025-11-23 04:23:18,474 | INFO     | all workflow threads have been joined
[2025-11-22 23:23:18] 2025-11-23 04:23:18,474 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 23:23:18] 2025-11-23 04:23:18,475 | INFO     | traces error code: 0
[2025-11-22 23:23:18] 2025-11-23 04:23:18,475 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 23:23:18] 2025-11-23 04:23:18,574 [wrapper] ==== pilot stdout END ====
[2025-11-22 23:23:18] 2025-11-23 04:23:18,579 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 23:23:18] 2025-11-23 04:23:18,584 [wrapper] pilotpid: 2835
[2025-11-22 23:23:18] 2025-11-23 04:23:18,588 [wrapper] Pilot exit status: 0
[2025-11-22 23:23:18] 2025-11-23 04:23:18,606 [wrapper] pandaids: 6895328961
[2025-11-22 23:23:18] 2025-11-23 04:23:18,652 [wrapper] cleanup supervisor_pilot 12044 2836
[2025-11-22 23:23:18] 2025-11-23 04:23:18,656 [wrapper] Test setup, not cleaning
[2025-11-22 23:23:18] 2025-11-23 04:23:18,661 [wrapper] apfmon messages muted
[2025-11-22 23:23:18] 2025-11-23 04:23:18,666 [wrapper] ==== wrapper stdout END ====
[2025-11-22 23:23:18] 2025-11-23 04:23:18,670 [wrapper] ==== wrapper stderr END ====
[2025-11-22 23:23:18]  *** Error codes and diagnostics ***
[2025-11-22 23:23:18]     "exeErrorCode": 0,
[2025-11-22 23:23:18]     "exeErrorDiag": "",
[2025-11-22 23:23:18]     "pilotErrorCode": 0,
[2025-11-22 23:23:18]     "pilotErrorDiag": "",
[2025-11-22 23:23:18]  *** Listing of results directory ***
[2025-11-22 23:23:18] total 1317060
[2025-11-22 23:23:18] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 13:11 pilot3.tar.gz
[2025-11-22 23:23:18] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 13:22 queuedata.json
[2025-11-22 23:23:18] -rwx------ 1 boincer umatlas     36292 Nov 21 13:23 runpilot2-wrapper.sh
[2025-11-22 23:23:18] -rw-r--r-- 1 boincer umatlas       100 Nov 22 12:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 23:23:18] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 12:14 run_atlas
[2025-11-22 23:23:18] -rw-r--r-- 1 boincer umatlas       105 Nov 22 12:14 job.xml
[2025-11-22 23:23:18] -rw-r--r-- 2 boincer umatlas 410387002 Nov 22 12:14 EVNT.47483658._000098.pool.root.1
[2025-11-22 23:23:18] -rw-r--r-- 2 boincer umatlas    590100 Nov 22 12:14 input.tar.gz
[2025-11-22 23:23:18] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 12:14 start_atlas.sh
[2025-11-22 23:23:18] drwxrwx--x 2 boincer umatlas      4096 Nov 22 12:14 shared
[2025-11-22 23:23:18] -rw-r--r-- 1 boincer umatlas         0 Nov 22 12:14 boinc_lockfile
[2025-11-22 23:23:18] -rw-r--r-- 1 boincer umatlas      2784 Nov 22 12:14 pandaJob.out
[2025-11-22 23:23:18] -rw------- 1 boincer umatlas        57 Nov 22 12:14 setup.sh.local
[2025-11-22 23:23:18] -rw------- 1 boincer umatlas    989776 Nov 22 12:15 agis_schedconf.cvmfs.json
[2025-11-22 23:23:18] drwx------ 5 boincer umatlas      4096 Nov 22 12:15 pilot3
[2025-11-22 23:23:18] -rw-r--r-- 1 boincer umatlas       533 Nov 22 23:10 boinc_task_state.xml
[2025-11-22 23:23:18] -rw-r--r-- 1 boincer umatlas      5910 Nov 22 23:18 init_data.xml
[2025-11-22 23:23:18] -rw------- 1 boincer umatlas 919503229 Nov 22 23:21 HITS.47556137._000980.pool.root.1
[2025-11-22 23:23:18] -rw------- 1 boincer umatlas      1063 Nov 22 23:22 memory_monitor_summary.json
[2025-11-22 23:23:18] -rw------- 1 boincer umatlas        95 Nov 22 23:22 pilot_heartbeat.json
[2025-11-22 23:23:18] -rw------- 1 boincer umatlas   1526164 Nov 22 23:22 agis_ddmendpoints.agis.ALL.json
[2025-11-22 23:23:18] -rw------- 1 boincer umatlas   1913078 Nov 22 23:22 log.47556137._000980.job.log.tgz.1
[2025-11-22 23:23:18] -rw------- 1 boincer umatlas      8662 Nov 22 23:22 heartbeat.json
[2025-11-22 23:23:18] -rw-r--r-- 1 boincer umatlas      8192 Nov 22 23:22 boinc_mmap_file
[2025-11-22 23:23:18] -rw-r--r-- 1 boincer umatlas        29 Nov 22 23:22 wrapper_checkpoint.txt
[2025-11-22 23:23:18] -rw------- 1 boincer umatlas      4931 Nov 22 23:23 pilotlog.txt
[2025-11-22 23:23:18] -rw------- 1 boincer umatlas   5513088 Nov 22 23:23 log.47556137._000980.job.log.1
[2025-11-22 23:23:18] -rw------- 1 boincer umatlas       353 Nov 22 23:23 output.list
[2025-11-22 23:23:18] -rw-r--r-- 1 boincer umatlas       620 Nov 22 23:23 runtime_log
[2025-11-22 23:23:18] -rw------- 1 boincer umatlas   7444480 Nov 22 23:23 result.tar.gz
[2025-11-22 23:23:18] -rw-r--r-- 1 boincer umatlas      9338 Nov 22 23:23 runtime_log.err
[2025-11-22 23:23:18] -rw------- 1 boincer umatlas       667 Nov 22 23:23 2zxMDmxxkg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmcJKDmXwQCVo.diag
[2025-11-22 23:23:18] -rw-r--r-- 1 boincer umatlas     21246 Nov 22 23:23 stderr.txt
[2025-11-22 23:23:18] HITS file was successfully produced:
[2025-11-22 23:23:18] -rw------- 1 boincer umatlas 919503229 Nov 22 23:21 shared/HITS.pool.root.1
[2025-11-22 23:23:18]  *** Contents of shared directory: ***
[2025-11-22 23:23:18] total 1306600
[2025-11-22 23:23:18] -rw-r--r-- 2 boincer umatlas 410387002 Nov 22 12:14 ATLAS.root_0
[2025-11-22 23:23:18] -rw-r--r-- 2 boincer umatlas    590100 Nov 22 12:14 input.tar.gz
[2025-11-22 23:23:18] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 12:14 start_atlas.sh
[2025-11-22 23:23:18] -rw------- 1 boincer umatlas 919503229 Nov 22 23:21 HITS.pool.root.1
[2025-11-22 23:23:18] -rw------- 1 boincer umatlas   7444480 Nov 22 23:23 result.tar.gz
23:23:20 (31368): run_atlas exited; CPU time 308273.338787
23:23:20 (31368): called boinc_finish(0)

</stderr_txt>
]]>

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