Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:50:37 (928284): wrapper (7.7.26015): starting
08:50:37 (928284): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 08:50:37] Arguments: --nthreads 12
[2025-11-22 08:50:37] Threads: 12
[2025-11-22 08:50:37] Checking for CVMFS
[2025-11-22 08:50:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 08:50:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 08:50:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 08:50:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 08:50:37] 2.11.5.0 3259785 22572 216808 153178 3 681 44467889 45568001 16904 130560 0 219111513 99.790 130893846 13026 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-22 08:50:37] CVMFS is ok
[2025-11-22 08:50:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 08:50:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 08:50:37] Further information can be found at the LHC@home message board.
[2025-11-22 08:50:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 08:50:37] Checking for apptainer binary...
[2025-11-22 08:50:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 08:50:37] Running /usr/bin/apptainer --version
[2025-11-22 08:50:38] apptainer version 1.4.1-1.el9
[2025-11-22 08:50:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 08:50:38] wns0092.triumf.lcg
[2025-11-22 08:50:38] apptainer works
[2025-11-22 08:50:38] Set ATHENA_PROC_NUMBER=12
[2025-11-22 08:50:38] Set ATHENA_CORE_NUMBER=12
[2025-11-22 08:50:38] Starting ATLAS job with PandaID=6895336380
[2025-11-22 08:50:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 08:55:56]  *** The last 200 lines of the pilot log: ***
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | could have reported an average CPU frequency of 2679 MHz (4 samples)
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | ..............................
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | . Timing measurements:
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | . get job = 0 s
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | . initial setup = 2 s
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | . payload setup = 6 s
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | . stage-in = 0 s
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | . payload execution = 113 s
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | . stage-out = 0 s
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | . log creation = 0 s
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | ..............................
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 08:55:56] 2025-11-22 16:55:15,762 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895336380/pilotlog.txt
[2025-11-22 08:55:56] 2025-11-22 16:55:15,773 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-22 08:55:56] - Log from pilotlog.txt -
[2025-11-22 08:55:56] 2025-11-22 16:55:15,758 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895336380/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 08:55:56] 2025-11-22 16:55:15,759 | INFO     | extracted standard info from prmon json
[2025-11-22 08:55:56] 2025-11-22 16:55:15,759 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 08:55:56] 2025-11-22 16:55:15,759 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 08:55:56] 2025-11-22 16:55:15,760 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 08:55:56] 2025-11-22 16:55:15,760 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 08:55:56] 2025-11-22 16:55:15,760 | WARNING  | wrong length of table data, x=[1763830279.0, 1763830340.0], y=[1433.0, 922258.0] (must be same and length>=4)
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | could have reported an average CPU frequency of 2679 MHz (4 samples)
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | ..............................
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | . Timing measurements:
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | . get job = 0 s
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | . initial setup = 2 s
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | . payload setup = 6 s
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | . stage-in = 0 s
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | . payload execution = 113 s
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | . stage-out = 0 s
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | . log creation = 0 s
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | ..............................
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 08:55:56] 2025-11-22 16:55:15,762 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895336380/pilotlog.txt
[2025-11-22 08:55:56] 2025-11-22 16:55:15,773 | WARNING  | 
[2025-11-22 08:55:56] [begin log extracts]
[2025-11-22 08:55:56] - Log from pilotlog.txt -
[2025-11-22 08:55:56] 2025-11-22 16:55:15,758 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895336380/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 08:55:56] 2025-11-22 16:55:15,759 | INFO     | extracted standard info from prmon json
[2025-11-22 08:55:56] 2025-11-22 16:55:15,759 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 08:55:56] 2025-11-22 16:55:15,759 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 08:55:56] 2025-11-22 16:55:15,760 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 08:55:56] 2025-11-22 16:55:15,760 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 08:55:56] 2025-11-22 16:55:15,760 | WARNING  | wrong length of table data, x=[1763830279.0, 1763830340.0], y=[1433.0, 922258.0] (must be same and length>=4)
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | could have reported an average CPU frequency of 2679 MHz (4 samples)
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | ..............................
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | . Timing measurements:
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | . get job = 0 s
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | . initial setup = 2 s
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | . payload setup = 6 s
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | . stage-in = 0 s
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | . payload execution = 113 s
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | . stage-out = 0 s
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | . log creation = 0 s
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | ..............................
[2025-11-22 08:55:56] 2025-11-22 16:55:15,761 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 08:55:56] 2025-11-22 16:55:15,762 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895336380/pilotlog.txt
[2025-11-22 08:55:56] [end log extracts]
[2025-11-22 08:55:56] 2025-11-22 16:55:15,773 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-22 08:55:56] 2025-11-22 16:55:15,774 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-22 08:55:56] 2025-11-22 16:55:16,199 | INFO     | 
[2025-11-22 08:55:56] 2025-11-22 16:55:16,199 | INFO     | job summary report
[2025-11-22 08:55:56] 2025-11-22 16:55:16,199 | INFO     | --------------------------------------------------
[2025-11-22 08:55:56] 2025-11-22 16:55:16,199 | INFO     | PanDA job id: 6895336380
[2025-11-22 08:55:56] 2025-11-22 16:55:16,199 | INFO     | task id: 47556137
[2025-11-22 08:55:56] 2025-11-22 16:55:16,199 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-22 08:53:01,587 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-22 08:55:56] 2025-11-22 16:55:16,199 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-22 08:55:56] 2025-11-22 16:55:16,199 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 08:55:56] 2025-11-22 16:55:16,199 | INFO     | pilot state: failed 
[2025-11-22 08:55:56] 2025-11-22 16:55:16,199 | INFO     | transexitcode: 65
[2025-11-22 08:55:56] 2025-11-22 16:55:16,199 | INFO     | exeerrorcode: 65
[2025-11-22 08:55:56] 2025-11-22 16:55:16,199 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-22 08:55:56] 2025-11-22 16:55:16,200 | INFO     | exitcode: 65
[2025-11-22 08:55:56] 2025-11-22 16:55:16,200 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-22 08:55:56] 2025-11-22 16:55:16,200 | INFO     | cpuconsumptiontime: 46 s
[2025-11-22 08:55:56] 2025-11-22 16:55:16,200 | INFO     | nevents: 0
[2025-11-22 08:55:56] 2025-11-22 16:55:16,200 | INFO     | neventsw: 0
[2025-11-22 08:55:56] 2025-11-22 16:55:16,200 | INFO     | pid: 941679
[2025-11-22 08:55:56] 2025-11-22 16:55:16,200 | INFO     | pgrp: 941679
[2025-11-22 08:55:56] 2025-11-22 16:55:16,200 | INFO     | corecount: 12
[2025-11-22 08:55:56] 2025-11-22 16:55:16,200 | INFO     | event service: False
[2025-11-22 08:55:56] 2025-11-22 16:55:16,200 | INFO     | sizes: {0: 2298753, 5: 2299015, 11: 2299071, 123: 2324467, 124: 2328757, 126: 2328785, 251: 2329079}
[2025-11-22 08:55:56] 2025-11-22 16:55:16,200 | INFO     | --------------------------------------------------
[2025-11-22 08:55:56] 2025-11-22 16:55:16,200 | INFO     | 
[2025-11-22 08:55:56] 2025-11-22 16:55:16,200 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-22 08:55:56] 2025-11-22 16:55:16,216 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 08:55:56] 2025-11-22 16:55:16,216 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 08:55:56] 2025-11-22 16:55:16,216 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 08:55:56] 2025-11-22 16:55:16,216 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 08:55:56] 2025-11-22 16:55:16,216 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 08:55:56] 2025-11-22 16:55:16,216 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 08:55:56] 2025-11-22 16:55:16,216 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 08:55:56] 2025-11-22 16:55:16,216 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 08:55:56] 2025-11-22 16:55:16,216 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 08:55:56] 2025-11-22 16:55:16,216 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 08:55:56] 2025-11-22 16:55:16,216 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 08:55:56] 2025-11-22 16:55:16,217 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 08:55:56] 2025-11-22 16:55:16,217 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 08:55:56] 2025-11-22 16:55:16,217 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 08:55:56] 2025-11-22 16:55:16,217 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 08:55:56] 2025-11-22 16:55:16,217 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 08:55:56] 2025-11-22 16:55:16,217 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 08:55:56] 2025-11-22 16:55:16,217 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 08:55:56] 2025-11-22 16:55:16,217 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 08:55:56] 2025-11-22 16:55:16,217 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 08:55:56] 2025-11-22 16:55:16,217 | INFO     | job 6895336380 has completed (purged errors)
[2025-11-22 08:55:56] 2025-11-22 16:55:16,217 | INFO     | overall cleanup function is called
[2025-11-22 08:55:56] 2025-11-22 16:55:17,225 | INFO     | --- collectZombieJob: --- 10, [941679]
[2025-11-22 08:55:56] 2025-11-22 16:55:17,226 | INFO     | zombie collector waiting for pid 941679
[2025-11-22 08:55:56] 2025-11-22 16:55:17,226 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 08:55:56] 2025-11-22 16:55:17,226 | INFO     | collected zombie processes
[2025-11-22 08:55:56] 2025-11-22 16:55:17,226 | INFO     | will attempt to kill all subprocesses of pid=941679
[2025-11-22 08:55:56] 2025-11-22 16:55:17,406 | INFO     | process IDs to be killed: [941679] (in reverse order)
[2025-11-22 08:55:56] 2025-11-22 16:55:17,478 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 08:55:56] 2025-11-22 16:55:17,478 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 08:55:56] 2025-11-22 16:55:17,486 | INFO     | did not find any defunct processes belonging to 941679
[2025-11-22 08:55:56] 2025-11-22 16:55:17,493 | INFO     | did not find any defunct processes belonging to 941679
[2025-11-22 08:55:56] 2025-11-22 16:55:17,494 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 08:55:56] 2025-11-22 16:55:17,494 | INFO     | ready for new job
[2025-11-22 08:55:56] 2025-11-22 16:55:17,494 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 08:55:56] 2025-11-22 16:55:17,495 | INFO     | ***************************************
[2025-11-22 08:55:56] 2025-11-22 16:55:17,496 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 08:55:56] 2025-11-22 16:55:17,496 | INFO     | ***************************************
[2025-11-22 08:55:56] 2025-11-22 16:55:17,496 | INFO     | 
[2025-11-22 08:55:56] 2025-11-22 16:55:17,497 | INFO     | architecture information:
[2025-11-22 08:55:56] 2025-11-22 16:55:17,498 | INFO     | executing command: cat /etc/os-release
[2025-11-22 08:55:56] 2025-11-22 16:55:17,531 | INFO     | cat /etc/os-release:
[2025-11-22 08:55:56] NAME="CentOS Linux"
[2025-11-22 08:55:56] VERSION="7 (Core)"
[2025-11-22 08:55:56] ID="centos"
[2025-11-22 08:55:56] ID_LIKE="rhel fedora"
[2025-11-22 08:55:56] VERSION_ID="7"
[2025-11-22 08:55:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 08:55:56] ANSI_COLOR="0;31"
[2025-11-22 08:55:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 08:55:56] HOME_URL="https://www.centos.org/"
[2025-11-22 08:55:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 08:55:56] 
[2025-11-22 08:55:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 08:55:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 08:55:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 08:55:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 08:55:56] 
[2025-11-22 08:55:56] 2025-11-22 16:55:17,531 | INFO     | ***************************************
[2025-11-22 08:55:56] 2025-11-22 16:55:18,035 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-22 08:55:56] 2025-11-22 16:55:18,136 | INFO     | sufficient remaining disk space (1598290919424 B)
[2025-11-22 08:55:56] 2025-11-22 16:55:18,136 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 08:55:56] 2025-11-22 16:55:18,136 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 08:55:56] 2025-11-22 16:55:18,136 | INFO     | update_server=False
[2025-11-22 08:55:56] 2025-11-22 16:55:18,136 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 08:55:56] 2025-11-22 16:55:18,478 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 08:55:56] 2025-11-22 16:55:18,478 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 08:55:56] 2025-11-22 16:55:18,478 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 08:55:56] 2025-11-22 16:55:18,478 | INFO     | will abort loop
[2025-11-22 08:55:56] 2025-11-22 16:55:18,573 | INFO     | all data control threads have been joined
[2025-11-22 08:55:56] 2025-11-22 16:55:19,145 | INFO     | [job] retrieve thread has finished
[2025-11-22 08:55:56] 2025-11-22 16:55:19,213 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 08:55:56] 2025-11-22 16:55:19,458 | INFO     | [data] copytool_in thread has finished
[2025-11-22 08:55:56] 2025-11-22 16:55:19,471 | INFO     | all job control threads have been joined
[2025-11-22 08:55:56] 2025-11-22 16:55:19,484 | INFO     | [job] job monitor thread has finished
[2025-11-22 08:55:56] 2025-11-22 16:55:19,515 | INFO     | all payload control threads have been joined
[2025-11-22 08:55:56] 2025-11-22 16:55:19,519 | INFO     | [payload] failed_post thread has finished
[2025-11-22 08:55:56] 2025-11-22 16:55:19,578 | INFO     | [data] control thread has finished
[2025-11-22 08:55:56] 2025-11-22 16:55:19,597 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 08:55:56] 2025-11-22 16:55:19,944 | INFO     | [payload] validate_post thread has finished
[2025-11-22 08:55:56] 2025-11-22 16:55:20,085 | INFO     | [job] validate thread has finished
[2025-11-22 08:55:56] 2025-11-22 16:55:20,199 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 08:55:56] 2025-11-22 16:55:20,309 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 08:55:56] 2025-11-22 16:55:20,310 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 08:55:56] 2025-11-22 16:55:20,388 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 08:55:56] 2025-11-22 16:55:20,476 | INFO     | [job] control thread has finished
[2025-11-22 08:55:56] 2025-11-22 16:55:20,522 | INFO     | [payload] control thread has finished
[2025-11-22 08:55:56] 2025-11-22 16:55:20,851 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 08:55:56] 2025-11-22 16:55:21,605 | INFO     | [data] copytool_out thread has finished
[2025-11-22 08:55:56] 2025-11-22 16:55:21,856 | INFO     | [job] queue monitor thread has finished
[2025-11-22 08:55:56] 2025-11-22 16:55:23,222 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 08:55:56] 2025-11-22 16:55:48,667 | INFO     | PID=934738 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 08:55:56] 2025-11-22 16:55:48,667 | INFO     | .. there are 27 such processes running
[2025-11-22 08:55:56] 2025-11-22 16:55:48,668 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 08:55:56] 2025-11-22 16:55:48,668 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 08:55:56] 2025-11-22 16:55:48,668 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 08:55:56] 2025-11-22 16:55:49,549 | INFO     | [monitor] cgroup control has ended
[2025-11-22 08:55:56] 2025-11-22 16:55:51,154 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139995184793408)>', '<ExcThread(monitor, started 139994500941568)>']
[2025-11-22 08:55:56] 2025-11-22 16:55:51,685 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 08:55:56] 2025-11-22 16:55:51,686 | INFO     | [monitor] control thread has ended
[2025-11-22 08:55:56] 2025-11-22 16:55:56,183 | INFO     | all workflow threads have been joined
[2025-11-22 08:55:56] 2025-11-22 16:55:56,183 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 08:55:56] 2025-11-22 16:55:56,183 | INFO     | traces error code: 0
[2025-11-22 08:55:56] 2025-11-22 16:55:56,183 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 08:55:56] 2025-11-22 16:55:56,458 [wrapper] ==== pilot stdout END ====
[2025-11-22 08:55:56] 2025-11-22 16:55:56,460 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 08:55:56] 2025-11-22 16:55:56,462 [wrapper] pilotpid: 934738
[2025-11-22 08:55:56] 2025-11-22 16:55:56,464 [wrapper] Pilot exit status: 0
[2025-11-22 08:55:56] 2025-11-22 16:55:56,489 [wrapper] pandaids: 6895336380
[2025-11-22 08:55:56] 2025-11-22 16:55:56,561 [wrapper] cleanup supervisor_pilot  934744 934739
[2025-11-22 08:55:56] 2025-11-22 16:55:56,610 [wrapper] Test setup, not cleaning
[2025-11-22 08:55:56] 2025-11-22 16:55:56,645 [wrapper] apfmon messages muted
[2025-11-22 08:55:56] 2025-11-22 16:55:56,670 [wrapper] ==== wrapper stdout END ====
[2025-11-22 08:55:56] 2025-11-22 16:55:56,679 [wrapper] ==== wrapper stderr END ====
[2025-11-22 08:55:56]  *** Error codes and diagnostics ***
[2025-11-22 08:55:56]     "exeErrorCode": 65,
[2025-11-22 08:55:56]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-22 08:55:56]     "pilotErrorCode": 1305,
[2025-11-22 08:55:56]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-22 08:55:56]  *** Listing of results directory ***
[2025-11-22 08:55:56] total 404584
[2025-11-22 08:55:56] -rw-r--r--. 1 boinc boinc    576529 Nov 21 21:12 pilot3.tar.gz
[2025-11-22 08:55:56] -rwx------. 1 boinc boinc     36292 Nov 21 21:27 runpilot2-wrapper.sh
[2025-11-22 08:55:56] -rw-r--r--. 1 boinc boinc      5112 Nov 21 21:27 queuedata.json
[2025-11-22 08:55:56] -rw-r--r--. 1 boinc boinc       100 Nov 22 08:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 08:55:56] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 08:50 run_atlas
[2025-11-22 08:55:56] -rw-r--r--. 1 boinc boinc       105 Nov 22 08:50 job.xml
[2025-11-22 08:55:56] -rw-r--r--. 2 boinc boinc 410074213 Nov 22 08:50 EVNT.47483658._000278.pool.root.1
[2025-11-22 08:55:56] -rw-r--r--. 1 boinc boinc      6595 Nov 22 08:50 init_data.xml
[2025-11-22 08:55:56] -rw-r--r--. 2 boinc boinc     15847 Nov 22 08:50 start_atlas.sh
[2025-11-22 08:55:56] drwxrwx--x. 2 boinc boinc      4096 Nov 22 08:50 shared
[2025-11-22 08:55:56] -rw-r--r--. 2 boinc boinc    590093 Nov 22 08:50 input.tar.gz
[2025-11-22 08:55:56] -rw-r--r--. 1 boinc boinc         0 Nov 22 08:50 boinc_lockfile
[2025-11-22 08:55:56] -rw-r--r--. 1 boinc boinc      2785 Nov 22 08:50 pandaJob.out
[2025-11-22 08:55:56] -rw-------. 1 boinc boinc    989768 Nov 22 08:50 agis_schedconf.cvmfs.json
[2025-11-22 08:55:56] -rw-------. 1 boinc boinc   1526164 Nov 22 08:50 agis_ddmendpoints.agis.ALL.json
[2025-11-22 08:55:56] drwx------. 5 boinc boinc      4096 Nov 22 08:50 pilot3
[2025-11-22 08:55:56] -rw-r--r--. 1 boinc boinc       524 Nov 22 08:52 boinc_task_state.xml
[2025-11-22 08:55:56] -rw-------. 1 boinc boinc      1013 Nov 22 08:53 memory_monitor_summary.json
[2025-11-22 08:55:56] -rw-------. 1 boinc boinc     47941 Nov 22 08:53 log.47556137._002750.job.log.tgz.1
[2025-11-22 08:55:56] -rw-------. 1 boinc boinc        95 Nov 22 08:54 pilot_heartbeat.json
[2025-11-22 08:55:56] -rw-------. 1 boinc boinc     10336 Nov 22 08:55 heartbeat.json
[2025-11-22 08:55:56] -rw-r--r--. 1 boinc boinc      8192 Nov 22 08:55 boinc_mmap_file
[2025-11-22 08:55:56] -rw-r--r--. 1 boinc boinc        23 Nov 22 08:55 wrapper_checkpoint.txt
[2025-11-22 08:55:56] -rw-------. 1 boinc boinc      5008 Nov 22 08:55 pilotlog.txt
[2025-11-22 08:55:56] -rw-------. 1 boinc boinc    100010 Nov 22 08:55 log.47556137._002750.job.log.1
[2025-11-22 08:55:56] -rw-------. 1 boinc boinc       186 Nov 22 08:55 output.list
[2025-11-22 08:55:56] -rw-r--r--. 1 boinc boinc       620 Nov 22 08:55 runtime_log
[2025-11-22 08:55:56] -rw-------. 1 boinc boinc    174080 Nov 22 08:55 result.tar.gz
[2025-11-22 08:55:56] -rw-------. 1 boinc boinc       645 Nov 22 08:55 RzGKDmmKvg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYyHKDml21jan.diag
[2025-11-22 08:55:56] -rw-r--r--. 1 boinc boinc      8636 Nov 22 08:55 runtime_log.err
[2025-11-22 08:55:56] -rw-r--r--. 1 boinc boinc     22421 Nov 22 08:55 stderr.txt
[2025-11-22 08:55:56] No HITS result produced
[2025-11-22 08:55:56]  *** Contents of shared directory: ***
[2025-11-22 08:55:56] total 401236
[2025-11-22 08:55:56] -rw-r--r--. 2 boinc boinc 410074213 Nov 22 08:50 ATLAS.root_0
[2025-11-22 08:55:56] -rw-r--r--. 2 boinc boinc     15847 Nov 22 08:50 start_atlas.sh
[2025-11-22 08:55:56] -rw-r--r--. 2 boinc boinc    590093 Nov 22 08:50 input.tar.gz
[2025-11-22 08:55:56] -rw-------. 1 boinc boinc    174080 Nov 22 08:55 result.tar.gz
08:55:58 (928284): run_atlas exited; CPU time 44.870525
08:55:58 (928284): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN