Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:59 (677601): wrapper (7.7.26015): starting
00:01:59 (677601): wrapper: running run_atlas (--nthreads 9)
[2025-11-23 00:01:59] Arguments: --nthreads 9
[2025-11-23 00:01:59] Threads: 9
[2025-11-23 00:01:59] Checking for CVMFS
[2025-11-23 00:02:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:02:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:02:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:02:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:02:02] 2.13.3.0 9366 25238 334860 153197 1 376 28652430 32935937 23950 16776704 0 180010956 99.824 81731614 33233 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 00:02:02] CVMFS is ok
[2025-11-23 00:02:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:02:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:02:02] Further information can be found at the LHC@home message board.
[2025-11-23 00:02:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:02:02] Checking for apptainer binary...
[2025-11-23 00:02:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:02:02] Running /usr/bin/apptainer --version
[2025-11-23 00:02:02] apptainer version 1.4.4-1.el9
[2025-11-23 00:02:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:02:03] c-6-2.aglt2.org
[2025-11-23 00:02:03] apptainer works
[2025-11-23 00:02:04] Set ATHENA_PROC_NUMBER=9
[2025-11-23 00:02:04] Set ATHENA_CORE_NUMBER=9
[2025-11-23 00:02:04] Starting ATLAS job with PandaID=6895328952
[2025-11-23 00:02:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 12:19:06]  *** The last 200 lines of the pilot log: ***
[2025-11-24 12:19:06] 2025-11-24 17:17:52,076 | INFO     | time since job start (130443s) is within the limit (172800.0s)
[2025-11-24 12:19:06] 2025-11-24 17:17:52,766 | INFO     | monitor loop #7144: job 0:6895328952 is in state 'finished'
[2025-11-24 12:19:06] 2025-11-24 17:17:52,766 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:19:06] 2025-11-24 17:17:54,083 | INFO     | time since job start (130445s) is within the limit (172800.0s)
[2025-11-24 12:19:06] 2025-11-24 17:17:55,294 | INFO     | monitor loop #7145: job 0:6895328952 is in state 'finished'
[2025-11-24 12:19:06] 2025-11-24 17:17:55,294 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:19:06] 2025-11-24 17:17:56,090 | INFO     | time since job start (130447s) is within the limit (172800.0s)
[2025-11-24 12:19:06] 2025-11-24 17:17:57,808 | INFO     | monitor loop #7146: job 0:6895328952 is in state 'finished'
[2025-11-24 12:19:06] 2025-11-24 17:17:57,808 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:19:06] 2025-11-24 17:17:58,097 | INFO     | time since job start (130449s) is within the limit (172800.0s)
[2025-11-24 12:19:06] 2025-11-24 17:18:00,104 | INFO     | time since job start (130451s) is within the limit (172800.0s)
[2025-11-24 12:19:06] 2025-11-24 17:18:00,327 | INFO     | monitor loop #7147: job 0:6895328952 is in state 'finished'
[2025-11-24 12:19:06] 2025-11-24 17:18:00,329 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:19:06] 2025-11-24 17:18:02,125 | INFO     | time since job start (130453s) is within the limit (172800.0s)
[2025-11-24 12:19:06] 2025-11-24 17:18:02,564 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 12:19:06] 2025-11-24 17:18:02,580 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.948975
[2025-11-24 12:19:06] 2025-11-24 17:18:02,588 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895328952/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 12:19:06] 2025-11-24 17:18:02,589 | INFO     | extracted standard info from prmon json
[2025-11-24 12:19:06] 2025-11-24 17:18:02,589 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 12:19:06] 2025-11-24 17:18:02,589 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 12:19:06] 2025-11-24 17:18:02,633 | INFO     | fitting pss+swap vs Time
[2025-11-24 12:19:06] 2025-11-24 17:18:02,637 | INFO     | sum of square deviations: 3017599817862.617
[2025-11-24 12:19:06] 2025-11-24 17:18:02,963 | INFO     | monitor loop #7148: job 0:6895328952 is in state 'finished'
[2025-11-24 12:19:06] 2025-11-24 17:18:02,963 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:19:06] 2025-11-24 17:18:03,110 | INFO     | sum of deviations: 12117060422985.713
[2025-11-24 12:19:06] 2025-11-24 17:18:03,111 | INFO     | mean x: 1763939562.230445
[2025-11-24 12:19:06] 2025-11-24 17:18:03,111 | INFO     | mean y: 3179094.675409836
[2025-11-24 12:19:06] 2025-11-24 17:18:03,111 | INFO     | intersect: -7079854954.94235
[2025-11-24 12:19:06] 2025-11-24 17:18:03,114 | INFO     | chi2: 18.625046462175376
[2025-11-24 12:19:06] 2025-11-24 17:18:03,117 | INFO     | sum of square deviations: 2996450092247.8203
[2025-11-24 12:19:06] 2025-11-24 17:18:03,234 | INFO     | sum of deviations: 12962719362053.115
[2025-11-24 12:19:06] 2025-11-24 17:18:03,235 | INFO     | mean x: 1763939409.7380283
[2025-11-24 12:19:06] 2025-11-24 17:18:03,235 | INFO     | mean y: 3185191.0342723005
[2025-11-24 12:19:06] 2025-11-24 17:18:03,235 | INFO     | intersect: -7627661589.713179
[2025-11-24 12:19:06] 2025-11-24 17:18:03,238 | INFO     | chi2: 15.08661357560332
[2025-11-24 12:19:06] 2025-11-24 17:18:03,238 | INFO     | current chi2=15.08661357560332 (change=18.99824998427829 %)
[2025-11-24 12:19:06] 2025-11-24 17:18:03,238 | INFO     | right removable region: 2129
[2025-11-24 12:19:06] 2025-11-24 17:18:03,241 | INFO     | sum of square deviations: 2996445885077.8203
[2025-11-24 12:19:06] 2025-11-24 17:18:03,369 | INFO     | sum of deviations: 11132583080576.834
[2025-11-24 12:19:06] 2025-11-24 17:18:03,369 | INFO     | mean x: 1763939714.7380283
[2025-11-24 12:19:06] 2025-11-24 17:18:03,369 | INFO     | mean y: 3186191.8169014086
[2025-11-24 12:19:06] 2025-11-24 17:18:03,369 | INFO     | intersect: -6550312912.3193
[2025-11-24 12:19:06] 2025-11-24 17:18:03,373 | INFO     | chi2: 14.072404129502537
[2025-11-24 12:19:06] 2025-11-24 17:18:03,373 | INFO     | current chi2=14.072404129502537 (change=24.443656244931038 %)
[2025-11-24 12:19:06] 2025-11-24 17:18:03,373 | INFO     | left removable region: 10
[2025-11-24 12:19:06] 2025-11-24 17:18:03,377 | INFO     | sum of square deviations: 2950260945121.4053
[2025-11-24 12:19:06] 2025-11-24 17:18:03,497 | INFO     | sum of deviations: 11306946756297.516
[2025-11-24 12:19:06] 2025-11-24 17:18:03,498 | INFO     | mean x: 1763939684.2538934
[2025-11-24 12:19:06] 2025-11-24 17:18:03,498 | INFO     | mean y: 3199716.3949976405
[2025-11-24 12:19:06] 2025-11-24 17:18:03,498 | INFO     | intersect: -6757141982.924851
[2025-11-24 12:19:06] 2025-11-24 17:18:03,501 | INFO     | chi2: 6.5398129070158255
[2025-11-24 12:19:06] 2025-11-24 17:18:03,501 | INFO     | current memory leak: 3.83 B/s (using 2119 data points, chi2=6.54)
[2025-11-24 12:19:06] 2025-11-24 17:18:03,503 | INFO     | could have reported an average CPU frequency of 2599 MHz (74 samples)
[2025-11-24 12:19:06] 2025-11-24 17:18:03,503 | INFO     | ..............................
[2025-11-24 12:19:06] 2025-11-24 17:18:03,503 | INFO     | . Timing measurements:
[2025-11-24 12:19:06] 2025-11-24 17:18:03,504 | INFO     | . get job = 0 s
[2025-11-24 12:19:06] 2025-11-24 17:18:03,504 | INFO     | . initial setup = 10 s
[2025-11-24 12:19:06] 2025-11-24 17:18:03,504 | INFO     | . payload setup = 68 s
[2025-11-24 12:19:06] 2025-11-24 17:18:03,504 | INFO     | . stage-in = 0 s
[2025-11-24 12:19:06] 2025-11-24 17:18:03,504 | INFO     | . payload execution = 130230 s
[2025-11-24 12:19:06] 2025-11-24 17:18:03,504 | INFO     | . stage-out = 6 s
[2025-11-24 12:19:06] 2025-11-24 17:18:03,504 | INFO     | . log creation = 1 s
[2025-11-24 12:19:06] 2025-11-24 17:18:03,504 | INFO     | ..............................
[2025-11-24 12:19:06] 2025-11-24 17:18:03,611 | INFO     | 
[2025-11-24 12:19:06] 2025-11-24 17:18:03,611 | INFO     | job summary report
[2025-11-24 12:19:06] 2025-11-24 17:18:03,611 | INFO     | --------------------------------------------------
[2025-11-24 12:19:06] 2025-11-24 17:18:03,612 | INFO     | PanDA job id: 6895328952
[2025-11-24 12:19:06] 2025-11-24 17:18:03,612 | INFO     | task id: 47556137
[2025-11-24 12:19:06] 2025-11-24 17:18:03,612 | INFO     | errors: (none)
[2025-11-24 12:19:06] 2025-11-24 17:18:03,612 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 12:19:06] 2025-11-24 17:18:03,612 | INFO     | pilot state: finished 
[2025-11-24 12:19:06] 2025-11-24 17:18:03,612 | INFO     | transexitcode: 0
[2025-11-24 12:19:06] 2025-11-24 17:18:03,612 | INFO     | exeerrorcode: 0
[2025-11-24 12:19:06] 2025-11-24 17:18:03,613 | INFO     | exeerrordiag: 
[2025-11-24 12:19:06] 2025-11-24 17:18:03,613 | INFO     | exitcode: 0
[2025-11-24 12:19:06] 2025-11-24 17:18:03,613 | INFO     | exitmsg: OK
[2025-11-24 12:19:06] 2025-11-24 17:18:03,613 | INFO     | cpuconsumptiontime: 314072 s
[2025-11-24 12:19:06] 2025-11-24 17:18:03,613 | INFO     | nevents: 1000
[2025-11-24 12:19:06] 2025-11-24 17:18:03,613 | INFO     | neventsw: 0
[2025-11-24 12:19:06] 2025-11-24 17:18:03,613 | INFO     | pid: 693895
[2025-11-24 12:19:06] 2025-11-24 17:18:03,613 | INFO     | pgrp: 693895
[2025-11-24 12:19:06] 2025-11-24 17:18:03,614 | INFO     | corecount: 9
[2025-11-24 12:19:06] 2025-11-24 17:18:03,614 | INFO     | event service: False
[2025-11-24 12:19:06] 2025-11-24 17:18:03,614 | INFO     | sizes: {0: 2298569, 1: 2298625, 2: 2298653, 3: 2298880, 4: 2298880, 15: 2298908, 29: 2299064, 40: 2299092, 51: 2299120, 56: 2299410, 64: 2299438, 130303: 2382796, 
[2025-11-24 12:19:06] 2025-11-24 17:18:03,614 | INFO     | --------------------------------------------------
[2025-11-24 12:19:06] 2025-11-24 17:18:03,614 | INFO     | 
[2025-11-24 12:19:06] 2025-11-24 17:18:03,614 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-24 12:19:06] 2025-11-24 17:18:03,641 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 12:19:06] 2025-11-24 17:18:03,641 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 12:19:06] 2025-11-24 17:18:03,641 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 12:19:06] 2025-11-24 17:18:03,642 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 12:19:06] 2025-11-24 17:18:03,642 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 12:19:06] 2025-11-24 17:18:03,642 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 12:19:06] 2025-11-24 17:18:03,642 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 12:19:06] 2025-11-24 17:18:03,642 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 12:19:06] 2025-11-24 17:18:03,642 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 12:19:06] 2025-11-24 17:18:03,642 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 12:19:06] 2025-11-24 17:18:03,642 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 12:19:06] 2025-11-24 17:18:03,643 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 12:19:06] 2025-11-24 17:18:03,643 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 12:19:06] 2025-11-24 17:18:03,643 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 12:19:06] 2025-11-24 17:18:03,643 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 12:19:06] 2025-11-24 17:18:03,644 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 12:19:06] 2025-11-24 17:18:03,644 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 12:19:06] 2025-11-24 17:18:03,644 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 12:19:06] 2025-11-24 17:18:03,644 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 12:19:06] 2025-11-24 17:18:03,645 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 12:19:06] 2025-11-24 17:18:03,645 | INFO     | job 6895328952 has completed (purged errors)
[2025-11-24 12:19:06] 2025-11-24 17:18:03,645 | INFO     | overall cleanup function is called
[2025-11-24 12:19:06] 2025-11-24 17:18:04,665 | INFO     | --- collectZombieJob: --- 10, [693895]
[2025-11-24 12:19:06] 2025-11-24 17:18:04,665 | INFO     | zombie collector waiting for pid 693895
[2025-11-24 12:19:06] 2025-11-24 17:18:04,665 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 12:19:06] 2025-11-24 17:18:04,665 | INFO     | collected zombie processes
[2025-11-24 12:19:06] 2025-11-24 17:18:04,665 | INFO     | will attempt to kill all subprocesses of pid=693895
[2025-11-24 12:19:06] 2025-11-24 17:18:06,067 | INFO     | process IDs to be killed: [693895] (in reverse order)
[2025-11-24 12:19:06] 2025-11-24 17:18:06,291 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 12:19:06] 2025-11-24 17:18:06,292 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 12:19:06] 2025-11-24 17:18:06,312 | INFO     | did not find any defunct processes belonging to 693895
[2025-11-24 12:19:06] 2025-11-24 17:18:06,340 | INFO     | did not find any defunct processes belonging to 693895
[2025-11-24 12:19:06] 2025-11-24 17:18:06,378 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 12:19:06] 2025-11-24 17:18:06,379 | INFO     | ready for new job
[2025-11-24 12:19:06] 2025-11-24 17:18:06,379 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 12:19:06] 2025-11-24 17:18:06,421 | INFO     | ***************************************
[2025-11-24 12:19:06] 2025-11-24 17:18:06,421 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 12:19:06] 2025-11-24 17:18:06,421 | INFO     | ***************************************
[2025-11-24 12:19:06] 2025-11-24 17:18:06,422 | INFO     | 
[2025-11-24 12:19:06] 2025-11-24 17:18:06,424 | INFO     | architecture information:
[2025-11-24 12:19:06] 2025-11-24 17:18:06,424 | INFO     | executing command: cat /etc/os-release
[2025-11-24 12:19:06] 2025-11-24 17:18:06,498 | INFO     | cat /etc/os-release:
[2025-11-24 12:19:06] NAME="CentOS Linux"
[2025-11-24 12:19:06] VERSION="7 (Core)"
[2025-11-24 12:19:06] ID="centos"
[2025-11-24 12:19:06] ID_LIKE="rhel fedora"
[2025-11-24 12:19:06] VERSION_ID="7"
[2025-11-24 12:19:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 12:19:06] ANSI_COLOR="0;31"
[2025-11-24 12:19:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 12:19:06] HOME_URL="https://www.centos.org/"
[2025-11-24 12:19:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 12:19:06] 
[2025-11-24 12:19:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 12:19:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 12:19:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 12:19:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 12:19:06] 
[2025-11-24 12:19:06] 2025-11-24 17:18:06,499 | INFO     | ***************************************
[2025-11-24 12:19:06] 2025-11-24 17:18:07,001 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-24 12:19:06] 2025-11-24 17:18:07,032 | INFO     | sufficient remaining disk space (72003616768 B)
[2025-11-24 12:19:06] 2025-11-24 17:18:07,033 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 12:19:06] 2025-11-24 17:18:07,033 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 12:19:06] 2025-11-24 17:18:07,033 | INFO     | update_server=False
[2025-11-24 12:19:06] 2025-11-24 17:18:07,033 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 12:19:06] 2025-11-24 17:18:07,034 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:19:06] 2025-11-24 17:18:07,034 | INFO     | aborting loop
[2025-11-24 12:19:06] 2025-11-24 17:18:07,045 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 12:19:06] 2025-11-24 17:18:07,381 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 12:19:06] 2025-11-24 17:18:07,384 | INFO     | all job control threads have been joined
[2025-11-24 12:19:06] 2025-11-24 17:18:07,524 | INFO     | all payload control threads have been joined
[2025-11-24 12:19:06] 2025-11-24 17:18:07,666 | INFO     | all data control threads have been joined
[2025-11-24 12:19:06] 2025-11-24 17:18:08,039 | INFO     | [job] job monitor thread has finished
[2025-11-24 12:19:06] 2025-11-24 17:18:08,058 | INFO     | [job] retrieve thread has finished
[2025-11-24 12:19:06] 2025-11-24 17:18:08,394 | INFO     | [job] control thread has finished
[2025-11-24 12:19:06] 2025-11-24 17:18:08,440 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 12:19:06] 2025-11-24 17:18:08,453 | INFO     | [data] copytool_in thread has finished
[2025-11-24 12:19:06] 2025-11-24 17:18:08,483 | INFO     | [payload] failed_post thread has finished
[2025-11-24 12:19:06] 2025-11-24 17:18:08,530 | INFO     | [payload] control thread has finished
[2025-11-24 12:19:06] 2025-11-24 17:18:08,583 | INFO     | [job] validate thread has finished
[2025-11-24 12:19:06] 2025-11-24 17:18:08,631 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:19:06] 2025-11-24 17:18:08,672 | INFO     | [data] control thread has finished
[2025-11-24 12:19:06] 2025-11-24 17:18:09,038 | INFO     | [payload] validate_post thread has finished
[2025-11-24 12:19:06] 2025-11-24 17:18:09,070 | INFO     | [data] copytool_out thread has finished
[2025-11-24 12:19:06] 2025-11-24 17:18:09,131 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 12:19:06] 2025-11-24 17:18:09,363 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 12:19:06] 2025-11-24 17:18:09,520 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 12:19:06] 2025-11-24 17:18:09,640 | INFO     | [job] queue monitor thread has finished
[2025-11-24 12:19:06] 2025-11-24 17:18:11,396 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 12:19:06] 2025-11-24 17:18:35,798 | INFO     | PID=683198 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 12:19:06] 2025-11-24 17:18:35,800 | INFO     | .. there are 34 such processes running
[2025-11-24 12:19:06] 2025-11-24 17:18:35,800 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 12:19:06] 2025-11-24 17:18:35,800 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 12:19:06] 2025-11-24 17:18:35,800 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 12:19:06] 2025-11-24 17:18:59,196 | INFO     | [monitor] cgroup control has ended
[2025-11-24 12:19:06] 2025-11-24 17:19:00,282 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140552489088832)>', '<ExcThread(monitor, started 140551856842496)>']
[2025-11-24 12:19:06] 2025-11-24 17:19:00,962 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 12:19:06] 2025-11-24 17:19:00,963 | INFO     | [monitor] control thread has ended
[2025-11-24 12:19:06] 2025-11-24 17:19:03,566 [wrapper] supervise_pilot (15 min periods counter: 146)
[2025-11-24 12:19:06] 2025-11-24 17:19:05,308 | INFO     | all workflow threads have been joined
[2025-11-24 12:19:06] 2025-11-24 17:19:05,308 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 12:19:06] 2025-11-24 17:19:05,309 | INFO     | traces error code: 0
[2025-11-24 12:19:06] 2025-11-24 17:19:05,309 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 12:19:06] 2025-11-24 17:19:05,876 [wrapper] ==== pilot stdout END ====
[2025-11-24 12:19:06] 2025-11-24 17:19:05,891 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 12:19:06] 2025-11-24 17:19:05,898 [wrapper] pilotpid: 683198
[2025-11-24 12:19:06] 2025-11-24 17:19:05,908 [wrapper] Pilot exit status: 0
[2025-11-24 12:19:06] 2025-11-24 17:19:05,978 [wrapper] pandaids: 6895328952
[2025-11-24 12:19:06] 2025-11-24 17:19:06,110 [wrapper] cleanup supervisor_pilot 3040942 683199
[2025-11-24 12:19:06] 2025-11-24 17:19:06,132 [wrapper] Test setup, not cleaning
[2025-11-24 12:19:06] 2025-11-24 17:19:06,162 [wrapper] apfmon messages muted
[2025-11-24 12:19:06] 2025-11-24 17:19:06,191 [wrapper] ==== wrapper stdout END ====
[2025-11-24 12:19:06] 2025-11-24 17:19:06,237 [wrapper] ==== wrapper stderr END ====
[2025-11-24 12:19:06]  *** Error codes and diagnostics ***
[2025-11-24 12:19:06]     "exeErrorCode": 0,
[2025-11-24 12:19:06]     "exeErrorDiag": "",
[2025-11-24 12:19:06]     "pilotErrorCode": 0,
[2025-11-24 12:19:06]     "pilotErrorDiag": "",
[2025-11-24 12:19:06]  *** Listing of results directory ***
[2025-11-24 12:19:06] total 1347340
[2025-11-24 12:19:06] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 13:11 pilot3.tar.gz
[2025-11-24 12:19:06] -rwx------. 1 boincer umatlas     36292 Nov 21 13:22 runpilot2-wrapper.sh
[2025-11-24 12:19:06] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 13:22 queuedata.json
[2025-11-24 12:19:06] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 12:19:06] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:01 run_atlas
[2025-11-24 12:19:06] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:01 job.xml
[2025-11-24 12:19:06] -rw-r--r--. 2 boincer umatlas 410387002 Nov 23 00:01 EVNT.47483658._000098.pool.root.1
[2025-11-24 12:19:06] -rw-r--r--. 2 boincer umatlas    590096 Nov 23 00:01 input.tar.gz
[2025-11-24 12:19:06] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:01 start_atlas.sh
[2025-11-24 12:19:06] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:01 shared
[2025-11-24 12:19:06] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:01 boinc_lockfile
[2025-11-24 12:19:06] -rw-r--r--. 1 boincer umatlas      2780 Nov 23 00:02 pandaJob.out
[2025-11-24 12:19:06] -rw-------. 1 boincer umatlas        57 Nov 23 00:02 setup.sh.local
[2025-11-24 12:19:06] -rw-------. 1 boincer umatlas    989784 Nov 23 00:03 agis_schedconf.cvmfs.json
[2025-11-24 12:19:06] drwx------. 5 boincer umatlas      4096 Nov 23 00:03 pilot3
[2025-11-24 12:19:06] -rw-r--r--. 1 boincer umatlas       534 Nov 24 12:04 boinc_task_state.xml
[2025-11-24 12:19:06] -rw-r--r--. 1 boincer umatlas      6656 Nov 24 12:13 init_data.xml
[2025-11-24 12:19:06] -rw-------. 1 boincer umatlas 928191171 Nov 24 12:16 HITS.47556137._000971.pool.root.1
[2025-11-24 12:19:06] -rw-------. 1 boincer umatlas      1068 Nov 24 12:17 memory_monitor_summary.json
[2025-11-24 12:19:06] -rw-------. 1 boincer umatlas   1516227 Nov 24 12:17 agis_ddmendpoints.agis.ALL.json
[2025-11-24 12:19:06] -rw-------. 1 boincer umatlas   3022736 Nov 24 12:17 log.47556137._000971.job.log.tgz.1
[2025-11-24 12:19:06] -rw-------. 1 boincer umatlas        95 Nov 24 12:17 pilot_heartbeat.json
[2025-11-24 12:19:06] -rw-------. 1 boincer umatlas      8623 Nov 24 12:18 heartbeat.json
[2025-11-24 12:19:06] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 12:19 boinc_mmap_file
[2025-11-24 12:19:06] -rw-r--r--. 1 boincer umatlas        30 Nov 24 12:19 wrapper_checkpoint.txt
[2025-11-24 12:19:06] -rw-------. 1 boincer umatlas      4823 Nov 24 12:19 pilotlog.txt
[2025-11-24 12:19:06] -rw-------. 1 boincer umatlas  15565220 Nov 24 12:19 log.47556137._000971.job.log.1
[2025-11-24 12:19:06] -rw-------. 1 boincer umatlas       353 Nov 24 12:19 output.list
[2025-11-24 12:19:06] -rw-r--r--. 1 boincer umatlas       620 Nov 24 12:19 runtime_log
[2025-11-24 12:19:06] -rw-------. 1 boincer umatlas  18606080 Nov 24 12:19 result.tar.gz
[2025-11-24 12:19:06] -rw-r--r--. 1 boincer umatlas      9329 Nov 24 12:19 runtime_log.err
[2025-11-24 12:19:06] -rw-------. 1 boincer umatlas       662 Nov 24 12:19 bOfLDmvwkg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjcJKDm7tqsWm.diag
[2025-11-24 12:19:06] -rw-r--r--. 1 boincer umatlas     21785 Nov 24 12:19 stderr.txt
[2025-11-24 12:19:06] HITS file was successfully produced:
[2025-11-24 12:19:06] -rw-------. 1 boincer umatlas 928191171 Nov 24 12:16 shared/HITS.pool.root.1
[2025-11-24 12:19:06]  *** Contents of shared directory: ***
[2025-11-24 12:19:06] total 1325988
[2025-11-24 12:19:06] -rw-r--r--. 2 boincer umatlas 410387002 Nov 23 00:01 ATLAS.root_0
[2025-11-24 12:19:06] -rw-r--r--. 2 boincer umatlas    590096 Nov 23 00:01 input.tar.gz
[2025-11-24 12:19:06] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:01 start_atlas.sh
[2025-11-24 12:19:06] -rw-------. 1 boincer umatlas 928191171 Nov 24 12:16 HITS.pool.root.1
[2025-11-24 12:19:06] -rw-------. 1 boincer umatlas  18606080 Nov 24 12:19 result.tar.gz
12:19:08 (677601): run_atlas exited; CPU time 317611.372821
12:19:08 (677601): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN