Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:55:23 (1548424): wrapper (7.7.26015): starting
07:55:23 (1548424): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 07:55:23] Arguments: --nthreads 3
[2025-11-25 07:55:23] Threads: 3
[2025-11-25 07:55:23] Checking for CVMFS
[2025-11-25 07:55:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 07:55:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 07:55:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 07:55:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 07:55:24] 2.9.2.0 281178 9406 97048 153273 0 81 35347262 36864000 0 130560 0 3526491 99.925 493535 7487 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 07:55:24] CVMFS is ok
[2025-11-25 07:55:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 07:55:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 07:55:24] Further information can be found at the LHC@home message board.
[2025-11-25 07:55:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 07:55:24] Checking for apptainer binary...
[2025-11-25 07:55:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 07:55:24] Running /usr/bin/apptainer --version
[2025-11-25 07:55:24] apptainer version 1.4.1-1.1
[2025-11-25 07:55:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 07:55:24] magicA161
[2025-11-25 07:55:24] apptainer works
[2025-11-25 07:55:24] Set ATHENA_PROC_NUMBER=3
[2025-11-25 07:55:24] Set ATHENA_CORE_NUMBER=3
[2025-11-25 07:55:24] Starting ATLAS job with PandaID=6894253367
[2025-11-25 07:55:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 15:43:08]  *** The last 200 lines of the pilot log: ***
[2025-11-25 15:43:08] 2025-11-25 14:42:16,927 | INFO     | all job control threads have been joined
[2025-11-25 15:43:08] 2025-11-25 14:42:17,084 | INFO     | all payload control threads have been joined
[2025-11-25 15:43:08] 2025-11-25 14:42:17,627 | INFO     | all data control threads have been joined
[2025-11-25 15:43:08] 2025-11-25 14:42:17,674 | INFO     | [job] retrieve thread has finished
[2025-11-25 15:43:08] 2025-11-25 14:42:17,674 | INFO     | [job] queue monitor thread has finished
[2025-11-25 15:43:08] 2025-11-25 14:42:17,674 | INFO     | [job] job monitor thread has finished
[2025-11-25 15:43:08] 2025-11-25 14:42:17,933 | INFO     | [job] control thread has finished
[2025-11-25 15:43:08] 2025-11-25 14:42:18,010 | INFO     | [payload] validate_post thread has finished
[2025-11-25 15:43:08] 2025-11-25 14:42:18,015 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 15:43:08] 2025-11-25 14:42:18,069 | INFO     | [data] copytool_in thread has finished
[2025-11-25 15:43:08] 2025-11-25 14:42:18,089 | INFO     | [payload] control thread has finished
[2025-11-25 15:43:08] 2025-11-25 14:42:18,449 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 15:43:08] 2025-11-25 14:42:18,558 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 15:43:08] 2025-11-25 14:42:18,587 | INFO     | [job] validate thread has finished
[2025-11-25 15:43:08] 2025-11-25 14:42:18,633 | INFO     | [data] control thread has finished
[2025-11-25 15:43:08] 2025-11-25 14:42:18,697 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 15:43:08] 2025-11-25 14:42:19,087 | INFO     | [payload] failed_post thread has finished
[2025-11-25 15:43:08] 2025-11-25 14:42:20,022 | INFO     | [data] copytool_out thread has finished
[2025-11-25 15:43:08] 2025-11-25 14:42:20,675 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 15:43:08] 2025-11-25 14:42:26,900 | INFO     | job.realtimelogging is not enabled
[2025-11-25 15:43:08] 2025-11-25 14:42:27,906 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 15:43:08] 2025-11-25 14:42:47,101 | INFO     | PID=1552142 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 15:43:08] 2025-11-25 14:42:47,101 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 15:43:08] 2025-11-25 14:42:47,101 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 15:43:08] 2025-11-25 14:42:47,101 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 15:43:08] 2025-11-25 14:43:01,965 | INFO     | [monitor] cgroup control has ended
[2025-11-25 15:43:08] 2025-11-25 14:43:03,350 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139997886117696)>', '<ExcThread(monitor, started 139997403408128)>']
[2025-11-25 15:43:08] 2025-11-25 14:43:04,188 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 15:43:08] 2025-11-25 14:43:04,188 | INFO     | [monitor] control thread has ended
[2025-11-25 15:43:08] 2025-11-25 14:43:08,376 | INFO     | all workflow threads have been joined
[2025-11-25 15:43:08] 2025-11-25 14:43:08,376 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 15:43:08] 2025-11-25 14:43:08,376 | INFO     | traces error code: 0
[2025-11-25 15:43:08] 2025-11-25 14:43:08,376 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 15:43:08] 2025-11-25 14:43:08,426 [wrapper] ==== pilot stdout END ====
[2025-11-25 15:43:08] 2025-11-25 14:43:08,429 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 15:43:08] 2025-11-25 14:43:08,431 [wrapper] pilotpid: 1552142
[2025-11-25 15:43:08] 2025-11-25 14:43:08,433 [wrapper] Pilot exit status: 0
[2025-11-25 15:43:08] 2025-11-25 14:43:08,440 [wrapper] pandaids: 6894253367
[2025-11-25 15:43:08] 2025-11-25 14:43:08,457 [wrapper] cleanup supervisor_pilot 1609643 1552143
[2025-11-25 15:43:08] 2025-11-25 14:43:08,459 [wrapper] Test setup, not cleaning
[2025-11-25 15:43:08] 2025-11-25 14:43:08,461 [wrapper] apfmon messages muted
[2025-11-25 15:43:08] 2025-11-25 14:43:08,464 [wrapper] ==== wrapper stdout END ====
[2025-11-25 15:43:08] 2025-11-25 14:43:08,466 [wrapper] ==== wrapper stderr END ====
[2025-11-25 15:43:08]  *** Error codes and diagnostics ***
[2025-11-25 15:43:08]     "exeErrorCode": 0,
[2025-11-25 15:43:08]     "exeErrorDiag": "",
[2025-11-25 15:43:08]     "pilotErrorCode": 0,
[2025-11-25 15:43:08]     "pilotErrorDiag": "",
[2025-11-25 15:43:08]  *** Listing of results directory ***
[2025-11-25 15:43:08] total 1307892
[2025-11-25 15:43:08] -rw-r--r-- 1 boinc boinc    576529 Nov 21 03:10 pilot3.tar.gz
[2025-11-25 15:43:08] -rwx------ 1 boinc boinc     36292 Nov 21 03:35 runpilot2-wrapper.sh
[2025-11-25 15:43:08] -rw-r--r-- 1 boinc boinc      5112 Nov 21 03:35 queuedata.json
[2025-11-25 15:43:08] -rw-r--r-- 1 boinc boinc       100 Nov 25 07:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 15:43:08] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 07:55 run_atlas
[2025-11-25 15:43:08] -rw-r--r-- 1 boinc boinc       105 Nov 25 07:55 job.xml
[2025-11-25 15:43:08] -rw-r--r-- 2 boinc boinc 410774591 Nov 25 07:55 EVNT.47493127._002128.pool.root.1
[2025-11-25 15:43:08] -rw-r--r-- 2 boinc boinc    590101 Nov 25 07:55 input.tar.gz
[2025-11-25 15:43:08] -rw-r--r-- 2 boinc boinc     15847 Nov 25 07:55 start_atlas.sh
[2025-11-25 15:43:08] drwxrwx--x 2 boinc boinc      4096 Nov 25 07:55 shared
[2025-11-25 15:43:08] -rw-r--r-- 1 boinc boinc         0 Nov 25 07:55 boinc_setup_complete
[2025-11-25 15:43:08] -rw-r--r-- 1 boinc boinc      6450 Nov 25 07:55 init_data.xml
[2025-11-25 15:43:08] -rw-r--r-- 1 boinc boinc         0 Nov 25 07:55 boinc_lockfile
[2025-11-25 15:43:08] -rw-r--r-- 1 boinc boinc      2784 Nov 25 07:55 pandaJob.out
[2025-11-25 15:43:08] -rw------- 1 boinc boinc    991801 Nov 25 07:55 agis_schedconf.cvmfs.json
[2025-11-25 15:43:08] drwx------ 5 boinc boinc      4096 Nov 25 07:55 pilot3
[2025-11-25 15:43:08] -rw-r--r-- 1 boinc boinc       531 Nov 25 15:39 boinc_task_state.xml
[2025-11-25 15:43:08] -rw------- 1 boinc boinc 914419245 Nov 25 15:41 HITS.47533967._000998.pool.root.1
[2025-11-25 15:43:08] -rw------- 1 boinc boinc      1021 Nov 25 15:42 memory_monitor_summary.json
[2025-11-25 15:43:08] -rw------- 1 boinc boinc   1516240 Nov 25 15:42 agis_ddmendpoints.agis.ALL.json
[2025-11-25 15:43:08] -rw------- 1 boinc boinc   1149985 Nov 25 15:42 log.47533967._000998.job.log.tgz.1
[2025-11-25 15:43:08] -rw------- 1 boinc boinc      8563 Nov 25 15:42 heartbeat.json
[2025-11-25 15:43:08] -rw-r--r-- 1 boinc boinc      8192 Nov 25 15:42 boinc_mmap_file
[2025-11-25 15:43:08] -rw-r--r-- 1 boinc boinc        28 Nov 25 15:42 wrapper_checkpoint.txt
[2025-11-25 15:43:08] -rw------- 1 boinc boinc        95 Nov 25 15:42 pilot_heartbeat.json
[2025-11-25 15:43:08] -rw------- 1 boinc boinc      4824 Nov 25 15:43 pilotlog.txt
[2025-11-25 15:43:08] -rw------- 1 boinc boinc   3944642 Nov 25 15:43 log.47533967._000998.job.log.1
[2025-11-25 15:43:08] -rw------- 1 boinc boinc       353 Nov 25 15:43 output.list
[2025-11-25 15:43:08] -rw-r--r-- 1 boinc boinc       620 Nov 25 15:43 runtime_log
[2025-11-25 15:43:08] -rw------- 1 boinc boinc   5109760 Nov 25 15:43 result.tar.gz
[2025-11-25 15:43:08] -rw-r--r-- 1 boinc boinc      8913 Nov 25 15:43 runtime_log.err
[2025-11-25 15:43:08] -rw------- 1 boinc boinc       668 Nov 25 15:43 rooNDmQAWg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmsGHKDmBE64Qn.diag
[2025-11-25 15:43:08] -rw-r--r-- 1 boinc boinc      6829 Nov 25 15:43 stderr.txt
[2025-11-25 15:43:08] HITS file was successfully produced:
[2025-11-25 15:43:08] -rw------- 1 boinc boinc 914419245 Nov 25 15:41 shared/HITS.pool.root.1
[2025-11-25 15:43:08]  *** Contents of shared directory: ***
[2025-11-25 15:43:08] total 1299732
[2025-11-25 15:43:08] -rw-r--r-- 2 boinc boinc 410774591 Nov 25 07:55 ATLAS.root_0
[2025-11-25 15:43:08] -rw-r--r-- 2 boinc boinc    590101 Nov 25 07:55 input.tar.gz
[2025-11-25 15:43:08] -rw-r--r-- 2 boinc boinc     15847 Nov 25 07:55 start_atlas.sh
[2025-11-25 15:43:08] -rw------- 1 boinc boinc 914419245 Nov 25 15:41 HITS.pool.root.1
[2025-11-25 15:43:08] -rw------- 1 boinc boinc   5109760 Nov 25 15:43 result.tar.gz
15:43:10 (1548424): run_atlas exited; CPU time 82685.102628
15:43:10 (1548424): called boinc_finish(0)

</stderr_txt>
]]>

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