Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:05:27 (1220869): wrapper (7.7.26015): starting
05:05:27 (1220869): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 05:05:27] Arguments: --nthreads 3
[2025-11-25 05:05:27] Threads: 3
[2025-11-25 05:05:27] Checking for CVMFS
[2025-11-25 05:05:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 05:05:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 05:05:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 05:05:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 05:05:27] 2.9.2.0 2059758 9234 87856 153268 1 81 18784972 36864000 0 130560 0 3424861 99.921 489722 4749 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 05:05:27] CVMFS is ok
[2025-11-25 05:05:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 05:05:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 05:05:27] Further information can be found at the LHC@home message board.
[2025-11-25 05:05:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 05:05:27] Checking for apptainer binary...
[2025-11-25 05:05:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 05:05:27] Running /usr/bin/apptainer --version
[2025-11-25 05:05:27] apptainer version 1.4.1-1.1
[2025-11-25 05:05:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 05:05:27] atlasA303
[2025-11-25 05:05:27] apptainer works
[2025-11-25 05:05:27] Set ATHENA_PROC_NUMBER=3
[2025-11-25 05:05:27] Set ATHENA_CORE_NUMBER=3
[2025-11-25 05:05:27] Starting ATLAS job with PandaID=6891598141
[2025-11-25 05:05:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 13:17:14]  *** The last 200 lines of the pilot log: ***
[2025-11-25 13:17:14] 2025-11-25 12:16:42,833 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:17:14] 2025-11-25 12:16:42,834 | INFO     | aborting loop
[2025-11-25 13:17:14] 2025-11-25 12:16:43,321 | INFO     | all data control threads have been joined
[2025-11-25 13:17:14] 2025-11-25 12:16:43,611 | INFO     | [job] queue monitor thread has finished
[2025-11-25 13:17:14] 2025-11-25 12:16:43,611 | INFO     | [job] retrieve thread has finished
[2025-11-25 13:17:14] 2025-11-25 12:16:43,784 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 13:17:14] 2025-11-25 12:16:43,839 | INFO     | [job] job monitor thread has finished
[2025-11-25 13:17:14] 2025-11-25 12:16:43,953 | INFO     | [data] copytool_in thread has finished
[2025-11-25 13:17:14] 2025-11-25 12:16:44,081 | INFO     | all payload control threads have been joined
[2025-11-25 13:17:14] 2025-11-25 12:16:44,301 | INFO     | all job control threads have been joined
[2025-11-25 13:17:14] 2025-11-25 12:16:44,316 | INFO     | [payload] validate_post thread has finished
[2025-11-25 13:17:14] 2025-11-25 12:16:44,326 | INFO     | [data] control thread has finished
[2025-11-25 13:17:14] 2025-11-25 12:16:44,472 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 13:17:14] 2025-11-25 12:16:44,478 | INFO     | [job] validate thread has finished
[2025-11-25 13:17:14] 2025-11-25 12:16:44,612 | INFO     | [data] copytool_out thread has finished
[2025-11-25 13:17:14] 2025-11-25 12:16:44,716 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 13:17:14] 2025-11-25 12:16:45,051 | INFO     | [payload] failed_post thread has finished
[2025-11-25 13:17:14] 2025-11-25 12:16:45,068 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 13:17:14] 2025-11-25 12:16:45,086 | INFO     | [payload] control thread has finished
[2025-11-25 13:17:14] 2025-11-25 12:16:45,307 | INFO     | [job] control thread has finished
[2025-11-25 13:17:14] 2025-11-25 12:16:47,791 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 13:17:14] 2025-11-25 12:16:53,156 | INFO     | job.realtimelogging is not enabled
[2025-11-25 13:17:14] 2025-11-25 12:16:54,162 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 13:17:14] 2025-11-25 12:17:07,456 | INFO     | [monitor] cgroup control has ended
[2025-11-25 13:17:14] 2025-11-25 12:17:09,357 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140239403796288)>', '<ExcThread(monitor, started 140238785599232)>']
[2025-11-25 13:17:14] 2025-11-25 12:17:12,775 | INFO     | PID=1224607 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 13:17:14] 2025-11-25 12:17:12,775 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 13:17:14] 2025-11-25 12:17:12,775 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 13:17:14] 2025-11-25 12:17:12,775 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 13:17:14] 2025-11-25 12:17:12,775 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 13:17:14] 2025-11-25 12:17:12,775 | INFO     | [monitor] control thread has ended
[2025-11-25 13:17:14] 2025-11-25 12:17:14,379 | INFO     | all workflow threads have been joined
[2025-11-25 13:17:14] 2025-11-25 12:17:14,379 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 13:17:14] 2025-11-25 12:17:14,379 | INFO     | traces error code: 0
[2025-11-25 13:17:14] 2025-11-25 12:17:14,379 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 13:17:14] 2025-11-25 12:17:14,430 [wrapper] ==== pilot stdout END ====
[2025-11-25 13:17:14] 2025-11-25 12:17:14,432 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 13:17:14] 2025-11-25 12:17:14,435 [wrapper] pilotpid: 1224607
[2025-11-25 13:17:14] 2025-11-25 12:17:14,437 [wrapper] Pilot exit status: 0
[2025-11-25 13:17:14] 2025-11-25 12:17:14,444 [wrapper] pandaids: 6891598141
[2025-11-25 13:17:14] 2025-11-25 12:17:14,460 [wrapper] cleanup supervisor_pilot 1391674 1224608
[2025-11-25 13:17:14] 2025-11-25 12:17:14,463 [wrapper] Test setup, not cleaning
[2025-11-25 13:17:14] 2025-11-25 12:17:14,465 [wrapper] apfmon messages muted
[2025-11-25 13:17:14] 2025-11-25 12:17:14,467 [wrapper] ==== wrapper stdout END ====
[2025-11-25 13:17:14] 2025-11-25 12:17:14,469 [wrapper] ==== wrapper stderr END ====
[2025-11-25 13:17:14]  *** Error codes and diagnostics ***
[2025-11-25 13:17:14]     "exeErrorCode": 0,
[2025-11-25 13:17:14]     "exeErrorDiag": "",
[2025-11-25 13:17:14]     "pilotErrorCode": 0,
[2025-11-25 13:17:14]     "pilotErrorDiag": "",
[2025-11-25 13:17:14]  *** Listing of results directory ***
[2025-11-25 13:17:14] total 1307988
[2025-11-25 13:17:14] -rw-r--r-- 1 boinc boinc    576529 Nov 18 19:50 pilot3.tar.gz
[2025-11-25 13:17:14] -rw-r--r-- 1 boinc boinc      5112 Nov 18 19:55 queuedata.json
[2025-11-25 13:17:14] -rwx------ 1 boinc boinc     36292 Nov 18 19:56 runpilot2-wrapper.sh
[2025-11-25 13:17:14] -rw-r--r-- 1 boinc boinc       100 Nov 25 05:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 13:17:14] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 05:05 run_atlas
[2025-11-25 13:17:14] -rw-r--r-- 1 boinc boinc       105 Nov 25 05:05 job.xml
[2025-11-25 13:17:14] -rw-r--r-- 2 boinc boinc 408706871 Nov 25 05:05 EVNT.47493065._000804.pool.root.1
[2025-11-25 13:17:14] -rw-r--r-- 2 boinc boinc    590097 Nov 25 05:05 input.tar.gz
[2025-11-25 13:17:14] -rw-r--r-- 2 boinc boinc     15120 Nov 25 05:05 start_atlas.sh
[2025-11-25 13:17:14] drwxrwx--x 2 boinc boinc      4096 Nov 25 05:05 shared
[2025-11-25 13:17:14] -rw-r--r-- 1 boinc boinc         0 Nov 25 05:05 boinc_setup_complete
[2025-11-25 13:17:14] -rw-r--r-- 1 boinc boinc      6448 Nov 25 05:05 init_data.xml
[2025-11-25 13:17:14] -rw-r--r-- 1 boinc boinc         0 Nov 25 05:05 boinc_lockfile
[2025-11-25 13:17:14] -rw-r--r-- 1 boinc boinc      2769 Nov 25 05:05 pandaJob.out
[2025-11-25 13:17:14] -rw------- 1 boinc boinc    991801 Nov 25 05:05 agis_schedconf.cvmfs.json
[2025-11-25 13:17:14] drwx------ 5 boinc boinc      4096 Nov 25 05:05 pilot3
[2025-11-25 13:17:14] -rw-r--r-- 1 boinc boinc       532 Nov 25 13:12 boinc_task_state.xml
[2025-11-25 13:17:14] -rw------- 1 boinc boinc 916136248 Nov 25 13:16 HITS.47493068._006681.pool.root.1
[2025-11-25 13:17:14] -rw------- 1 boinc boinc      1021 Nov 25 13:16 memory_monitor_summary.json
[2025-11-25 13:17:14] -rw------- 1 boinc boinc   1516240 Nov 25 13:16 agis_ddmendpoints.agis.ALL.json
[2025-11-25 13:17:14] -rw------- 1 boinc boinc   1168196 Nov 25 13:16 log.47493068._006681.job.log.tgz.1
[2025-11-25 13:17:14] -rw------- 1 boinc boinc      8559 Nov 25 13:16 heartbeat.json
[2025-11-25 13:17:14] -rw-r--r-- 1 boinc boinc      8192 Nov 25 13:16 boinc_mmap_file
[2025-11-25 13:17:14] -rw-r--r-- 1 boinc boinc        28 Nov 25 13:16 wrapper_checkpoint.txt
[2025-11-25 13:17:14] -rw------- 1 boinc boinc        95 Nov 25 13:17 pilot_heartbeat.json
[2025-11-25 13:17:14] -rw------- 1 boinc boinc      4824 Nov 25 13:17 pilotlog.txt
[2025-11-25 13:17:14] -rw------- 1 boinc boinc   4149186 Nov 25 13:17 log.47493068._006681.job.log.1
[2025-11-25 13:17:14] -rw------- 1 boinc boinc       353 Nov 25 13:17 output.list
[2025-11-25 13:17:14] -rw-r--r-- 1 boinc boinc       620 Nov 25 13:17 runtime_log
[2025-11-25 13:17:14] -rw------- 1 boinc boinc   5335040 Nov 25 13:17 result.tar.gz
[2025-11-25 13:17:14] -rw-r--r-- 1 boinc boinc      8793 Nov 25 13:17 runtime_log.err
[2025-11-25 13:17:14] -rw------- 1 boinc boinc       668 Nov 25 13:17 0eyMDmW3ff8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm8jFKDm9ymzLn.diag
[2025-11-25 13:17:14] -rw-r--r-- 1 boinc boinc      7034 Nov 25 13:17 stderr.txt
[2025-11-25 13:17:14] HITS file was successfully produced:
[2025-11-25 13:17:14] -rw------- 1 boinc boinc 916136248 Nov 25 13:16 shared/HITS.pool.root.1
[2025-11-25 13:17:14]  *** Contents of shared directory: ***
[2025-11-25 13:17:14] total 1299612
[2025-11-25 13:17:14] -rw-r--r-- 2 boinc boinc 408706871 Nov 25 05:05 ATLAS.root_0
[2025-11-25 13:17:14] -rw-r--r-- 2 boinc boinc    590097 Nov 25 05:05 input.tar.gz
[2025-11-25 13:17:14] -rw-r--r-- 2 boinc boinc     15120 Nov 25 05:05 start_atlas.sh
[2025-11-25 13:17:14] -rw------- 1 boinc boinc 916136248 Nov 25 13:16 HITS.pool.root.1
[2025-11-25 13:17:14] -rw------- 1 boinc boinc   5335040 Nov 25 13:17 result.tar.gz
13:17:15 (1220869): run_atlas exited; CPU time 86986.957502
13:17:15 (1220869): called boinc_finish(0)

</stderr_txt>
]]>

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