Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:01:22 (3814958): wrapper (7.7.26015): starting
14:01:22 (3814958): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 14:01:22] Arguments: --nthreads 8
[2025-11-22 14:01:22] Threads: 8
[2025-11-22 14:01:22] Checking for CVMFS
[2025-11-22 14:01:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 14:01:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 14:01:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 14:01:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 14:01:24] 2.13.3.0 5206 1770 227584 153181 0 582 36999897 40960000 37780 16776704 0 15911230 99.820 5823886 25150 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 14:01:24] CVMFS is ok
[2025-11-22 14:01:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 14:01:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 14:01:24] Further information can be found at the LHC@home message board.
[2025-11-22 14:01:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 14:01:24] Checking for apptainer binary...
[2025-11-22 14:01:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 14:01:24] Running /usr/bin/apptainer --version
[2025-11-22 14:01:24] apptainer version 1.4.4-1.el9
[2025-11-22 14:01:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 14:01:25] lc-12-9.aglt2.org
[2025-11-22 14:01:25] apptainer works
[2025-11-22 14:01:25] Set ATHENA_PROC_NUMBER=8
[2025-11-22 14:01:25] Set ATHENA_CORE_NUMBER=8
[2025-11-22 14:01:25] Starting ATLAS job with PandaID=6895336143
[2025-11-22 14:01:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:20:12 (3814958): BOINC client no longer exists - exiting
20:20:12 (3814958): timer handler: client dead, exiting
20:28:34 (1594270): wrapper (7.7.26015): starting
20:28:34 (1594270): wrapper: running run_atlas (--nthreads 9)
[2025-11-22 20:28:34] Arguments: --nthreads 9
[2025-11-22 20:28:34] Threads: 9
[2025-11-22 20:28:34] This job has been restarted, cleaning up previous attempt
[2025-11-22 20:28:34] Checking for CVMFS
[2025-11-22 20:28:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 20:28:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 20:28:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 20:28:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 20:28:36] 2.13.3.0 5206 2158 201740 153192 1 230 22341028 40960000 37932 16776704 0 19379700 99.831 6688416 25465 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 20:28:36] CVMFS is ok
[2025-11-22 20:28:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 20:28:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 20:28:36] Further information can be found at the LHC@home message board.
[2025-11-22 20:28:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 20:28:36] Checking for apptainer binary...
[2025-11-22 20:28:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 20:28:36] Running /usr/bin/apptainer --version
[2025-11-22 20:28:36] apptainer version 1.4.4-1.el9
[2025-11-22 20:28:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 20:28:37] lc-12-9.aglt2.org
[2025-11-22 20:28:37] apptainer works
[2025-11-22 20:28:37] Set ATHENA_PROC_NUMBER=9
[2025-11-22 20:28:37] Set ATHENA_CORE_NUMBER=9
[2025-11-22 20:28:37] Starting ATLAS job with PandaID=6895336143
[2025-11-22 20:28:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 03:30:57]  *** The last 200 lines of the pilot log: ***
[2025-11-24 03:30:57] 2025-11-24 08:07:21,494 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:30:57] 2025-11-24 08:07:22,836 | INFO     | time since job start (110277s) is within the limit (172800.0s)
[2025-11-24 03:30:57] 2025-11-24 08:07:24,001 | INFO     | monitor loop #5067: job 0:6895336143 is in state 'finished'
[2025-11-24 03:30:57] 2025-11-24 08:07:24,001 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:30:57] 2025-11-24 08:07:24,843 | INFO     | time since job start (110279s) is within the limit (172800.0s)
[2025-11-24 03:30:57] 2025-11-24 08:07:26,512 | INFO     | monitor loop #5068: job 0:6895336143 is in state 'finished'
[2025-11-24 03:30:57] 2025-11-24 08:07:26,512 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:30:57] 2025-11-24 08:07:26,865 | INFO     | time since job start (110281s) is within the limit (172800.0s)
[2025-11-24 03:30:57] 2025-11-24 08:07:28,874 | INFO     | time since job start (110283s) is within the limit (172800.0s)
[2025-11-24 03:30:57] 2025-11-24 08:07:29,019 | INFO     | monitor loop #5069: job 0:6895336143 is in state 'finished'
[2025-11-24 03:30:57] 2025-11-24 08:07:29,019 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:30:57] 2025-11-24 08:07:30,922 | INFO     | time since job start (110285s) is within the limit (172800.0s)
[2025-11-24 03:30:57] 2025-11-24 08:07:31,524 | INFO     | monitor loop #5070: job 0:6895336143 is in state 'finished'
[2025-11-24 03:30:57] 2025-11-24 08:07:31,524 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:30:57] 2025-11-24 08:07:32,931 | INFO     | time since job start (110287s) is within the limit (172800.0s)
[2025-11-24 03:30:57] 2025-11-24 08:07:33,543 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 03:30:57] 2025-11-24 08:07:33,562 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2717.958343749999
[2025-11-24 03:30:57] 2025-11-24 08:07:33,612 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895336143/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 03:30:57] 2025-11-24 08:07:33,613 | INFO     | extracted standard info from prmon json
[2025-11-24 03:30:57] 2025-11-24 08:07:33,613 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 03:30:57] 2025-11-24 08:07:33,613 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 03:30:57] 2025-11-24 08:07:33,699 | INFO     | fitting pss+swap vs Time
[2025-11-24 03:30:57] 2025-11-24 08:07:33,710 | INFO     | sum of square deviations: 1826504340924.6365
[2025-11-24 03:30:57] 2025-11-24 08:07:33,920 | INFO     | sum of deviations: 6293927897999.638
[2025-11-24 03:30:57] 2025-11-24 08:07:33,920 | INFO     | mean x: 1763916521.131783
[2025-11-24 03:30:57] 2025-11-24 08:07:33,920 | INFO     | mean y: 3062557.9678848283
[2025-11-24 03:30:57] 2025-11-24 08:07:33,920 | INFO     | intersect: -6075194773.998607
[2025-11-24 03:30:57] 2025-11-24 08:07:33,934 | INFO     | chi2: 16.878859681070676
[2025-11-24 03:30:57] 2025-11-24 08:07:33,937 | INFO     | sum of square deviations: 1811378061360.859
[2025-11-24 03:30:57] 2025-11-24 08:07:34,057 | INFO     | monitor loop #5071: job 0:6895336143 is in state 'finished'
[2025-11-24 03:30:57] 2025-11-24 08:07:34,057 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:30:57] 2025-11-24 08:07:34,314 | INFO     | sum of deviations: 6941579205087.141
[2025-11-24 03:30:57] 2025-11-24 08:07:34,314 | INFO     | mean x: 1763916368.6440866
[2025-11-24 03:30:57] 2025-11-24 08:07:34,314 | INFO     | mean y: 3069086.1515824543
[2025-11-24 03:30:57] 2025-11-24 08:07:34,314 | INFO     | intersect: -6756626995.677752
[2025-11-24 03:30:57] 2025-11-24 08:07:34,317 | INFO     | chi2: 13.609925437312027
[2025-11-24 03:30:57] 2025-11-24 08:07:34,317 | INFO     | current chi2=13.609925437312027 (change=19.36703252189896 %)
[2025-11-24 03:30:57] 2025-11-24 08:07:34,317 | INFO     | right removable region: 1800
[2025-11-24 03:30:57] 2025-11-24 08:07:34,319 | INFO     | sum of square deviations: 1811373068624.571
[2025-11-24 03:30:57] 2025-11-24 08:07:34,390 | INFO     | sum of deviations: 5614192735576.048
[2025-11-24 03:30:57] 2025-11-24 08:07:34,390 | INFO     | mean x: 1763916673.6446419
[2025-11-24 03:30:57] 2025-11-24 08:07:34,390 | INFO     | mean y: 3069407.5641310383
[2025-11-24 03:30:57] 2025-11-24 08:07:34,390 | INFO     | intersect: -5464036373.608176
[2025-11-24 03:30:57] 2025-11-24 08:07:34,392 | INFO     | chi2: 13.7082234662447
[2025-11-24 03:30:57] 2025-11-24 08:07:34,394 | INFO     | current chi2=13.7082234662447 (change=18.78465888534985 %)
[2025-11-24 03:30:57] 2025-11-24 08:07:34,394 | INFO     | left removable region: 10
[2025-11-24 03:30:57] 2025-11-24 08:07:34,396 | INFO     | sum of square deviations: 1778385698256.388
[2025-11-24 03:30:57] 2025-11-24 08:07:34,612 | INFO     | sum of deviations: 6124784475099.064
[2025-11-24 03:30:57] 2025-11-24 08:07:34,612 | INFO     | mean x: 1763916643.1681564
[2025-11-24 03:30:57] 2025-11-24 08:07:34,613 | INFO     | mean y: 3079880.232402235
[2025-11-24 03:30:57] 2025-11-24 08:07:34,613 | INFO     | intersect: -6071872972.81716
[2025-11-24 03:30:57] 2025-11-24 08:07:34,619 | INFO     | chi2: 9.405563126539167
[2025-11-24 03:30:57] 2025-11-24 08:07:34,619 | INFO     | current memory leak: 3.44 B/s (using 1790 data points, chi2=9.41)
[2025-11-24 03:30:57] 2025-11-24 08:07:34,621 | INFO     | could have reported an average CPU frequency of 2689 MHz (63 samples)
[2025-11-24 03:30:57] 2025-11-24 08:07:34,621 | INFO     | ..............................
[2025-11-24 03:30:57] 2025-11-24 08:07:34,621 | INFO     | . Timing measurements:
[2025-11-24 03:30:57] 2025-11-24 08:07:34,621 | INFO     | . get job = 0 s
[2025-11-24 03:30:57] 2025-11-24 08:07:34,626 | INFO     | . initial setup = 3 s
[2025-11-24 03:30:57] 2025-11-24 08:07:34,626 | INFO     | . payload setup = 28 s
[2025-11-24 03:30:57] 2025-11-24 08:07:34,626 | INFO     | . stage-in = 0 s
[2025-11-24 03:30:57] 2025-11-24 08:07:34,626 | INFO     | . payload execution = 110171 s
[2025-11-24 03:30:57] 2025-11-24 08:07:34,626 | INFO     | . stage-out = 9 s
[2025-11-24 03:30:57] 2025-11-24 08:07:34,626 | INFO     | . log creation = 2 s
[2025-11-24 03:30:57] 2025-11-24 08:07:34,626 | INFO     | ..............................
[2025-11-24 03:30:57] 2025-11-24 08:07:34,776 | INFO     | 
[2025-11-24 03:30:57] 2025-11-24 08:07:34,776 | INFO     | job summary report
[2025-11-24 03:30:57] 2025-11-24 08:07:34,776 | INFO     | --------------------------------------------------
[2025-11-24 03:30:57] 2025-11-24 08:07:34,776 | INFO     | PanDA job id: 6895336143
[2025-11-24 03:30:57] 2025-11-24 08:07:34,776 | INFO     | task id: 47556137
[2025-11-24 03:30:57] 2025-11-24 08:07:34,777 | INFO     | errors: (none)
[2025-11-24 03:30:57] 2025-11-24 08:07:34,777 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 03:30:57] 2025-11-24 08:07:34,777 | INFO     | pilot state: finished 
[2025-11-24 03:30:57] 2025-11-24 08:07:34,777 | INFO     | transexitcode: 0
[2025-11-24 03:30:57] 2025-11-24 08:07:34,777 | INFO     | exeerrorcode: 0
[2025-11-24 03:30:57] 2025-11-24 08:07:34,777 | INFO     | exeerrordiag: 
[2025-11-24 03:30:57] 2025-11-24 08:07:34,777 | INFO     | exitcode: 0
[2025-11-24 03:30:57] 2025-11-24 08:07:34,777 | INFO     | exitmsg: OK
[2025-11-24 03:30:57] 2025-11-24 08:07:34,777 | INFO     | cpuconsumptiontime: 267818 s
[2025-11-24 03:30:57] 2025-11-24 08:07:34,777 | INFO     | nevents: 1000
[2025-11-24 03:30:57] 2025-11-24 08:07:34,777 | INFO     | neventsw: 0
[2025-11-24 03:30:57] 2025-11-24 08:07:34,777 | INFO     | pid: 1655946
[2025-11-24 03:30:57] 2025-11-24 08:07:34,777 | INFO     | pgrp: 1655946
[2025-11-24 03:30:57] 2025-11-24 08:07:34,777 | INFO     | corecount: 9
[2025-11-24 03:30:57] 2025-11-24 08:07:34,777 | INFO     | event service: False
[2025-11-24 03:30:57] 2025-11-24 08:07:34,778 | INFO     | sizes: {0: 2298636, 1: 2298835, 12: 2298835, 19: 2299125, 23: 2299153, 110204: 2372614, 110214: 2381608, 110215: 2381664, 110248: 2381910}
[2025-11-24 03:30:57] 2025-11-24 08:07:34,778 | INFO     | --------------------------------------------------
[2025-11-24 03:30:57] 2025-11-24 08:07:34,778 | INFO     | 
[2025-11-24 03:30:57] 2025-11-24 08:07:34,778 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 03:30:57] 2025-11-24 08:07:34,937 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 03:30:57] 2025-11-24 08:07:34,937 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 03:30:57] 2025-11-24 08:07:34,937 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 03:30:57] 2025-11-24 08:07:34,937 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 03:30:57] 2025-11-24 08:07:34,937 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 03:30:57] 2025-11-24 08:07:34,937 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 03:30:57] 2025-11-24 08:07:34,937 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 03:30:57] 2025-11-24 08:07:34,938 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 03:30:57] 2025-11-24 08:07:34,938 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 03:30:57] 2025-11-24 08:07:34,938 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 03:30:57] 2025-11-24 08:07:34,938 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 03:30:57] 2025-11-24 08:07:34,938 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 03:30:57] 2025-11-24 08:07:34,938 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 03:30:57] 2025-11-24 08:07:34,938 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 03:30:57] 2025-11-24 08:07:34,938 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 03:30:57] 2025-11-24 08:07:34,938 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 03:30:57] 2025-11-24 08:07:34,938 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 03:30:57] 2025-11-24 08:07:34,938 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 03:30:57] 2025-11-24 08:07:34,938 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 03:30:57] 2025-11-24 08:07:34,938 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 03:30:57] 2025-11-24 08:07:34,939 | INFO     | job 6895336143 has completed (purged errors)
[2025-11-24 03:30:57] 2025-11-24 08:07:34,939 | INFO     | overall cleanup function is called
[2025-11-24 03:30:57] 2025-11-24 08:07:35,967 | INFO     | --- collectZombieJob: --- 10, [1655946]
[2025-11-24 03:30:57] 2025-11-24 08:07:35,967 | INFO     | zombie collector waiting for pid 1655946
[2025-11-24 03:30:57] 2025-11-24 08:07:35,967 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 03:30:57] 2025-11-24 08:07:35,967 | INFO     | collected zombie processes
[2025-11-24 03:30:57] 2025-11-24 08:07:35,967 | INFO     | will attempt to kill all subprocesses of pid=1655946
[2025-11-24 03:30:57] 2025-11-24 08:07:38,108 | INFO     | process IDs to be killed: [1655946] (in reverse order)
[2025-11-24 03:30:57] 2025-11-24 08:07:38,493 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 03:30:57] 2025-11-24 08:07:38,507 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 03:30:57] 2025-11-24 08:07:38,535 | INFO     | did not find any defunct processes belonging to 1655946
[2025-11-24 03:30:57] 2025-11-24 08:07:38,562 | INFO     | did not find any defunct processes belonging to 1655946
[2025-11-24 03:30:57] 2025-11-24 08:07:38,567 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 03:30:57] 2025-11-24 08:07:38,568 | INFO     | ready for new job
[2025-11-24 03:30:57] 2025-11-24 08:07:38,568 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 03:30:57] 2025-11-24 08:07:38,576 | INFO     | ***************************************
[2025-11-24 03:30:57] 2025-11-24 08:07:38,577 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 03:30:57] 2025-11-24 08:07:38,577 | INFO     | ***************************************
[2025-11-24 03:30:57] 2025-11-24 08:07:38,577 | INFO     | 
[2025-11-24 03:30:57] 2025-11-24 08:07:38,591 | INFO     | architecture information:
[2025-11-24 03:30:57] 2025-11-24 08:07:38,591 | INFO     | executing command: cat /etc/os-release
[2025-11-24 03:30:57] 2025-11-24 08:07:38,631 | INFO     | cat /etc/os-release:
[2025-11-24 03:30:57] NAME="CentOS Linux"
[2025-11-24 03:30:57] VERSION="7 (Core)"
[2025-11-24 03:30:57] ID="centos"
[2025-11-24 03:30:57] ID_LIKE="rhel fedora"
[2025-11-24 03:30:57] VERSION_ID="7"
[2025-11-24 03:30:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 03:30:57] ANSI_COLOR="0;31"
[2025-11-24 03:30:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 03:30:57] HOME_URL="https://www.centos.org/"
[2025-11-24 03:30:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 03:30:57] 
[2025-11-24 03:30:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 03:30:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 03:30:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 03:30:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 03:30:57] 
[2025-11-24 03:30:57] 2025-11-24 08:07:38,631 | INFO     | ***************************************
[2025-11-24 03:30:57] 2025-11-24 08:07:39,136 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 03:30:57] 2025-11-24 08:07:39,212 | INFO     | sufficient remaining disk space (390331367424 B)
[2025-11-24 03:30:57] 2025-11-24 08:07:39,212 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 03:30:57] 2025-11-24 08:07:39,213 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 03:30:57] 2025-11-24 08:07:39,213 | INFO     | update_server=False
[2025-11-24 03:30:57] 2025-11-24 08:07:39,213 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 03:30:57] 2025-11-24 08:07:39,213 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 03:30:57] 2025-11-24 08:07:39,476 | INFO     | all data control threads have been joined
[2025-11-24 03:30:57] 2025-11-24 08:07:39,553 | INFO     | all payload control threads have been joined
[2025-11-24 03:30:57] 2025-11-24 08:07:39,844 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:30:57] 2025-11-24 08:07:40,129 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:30:57] 2025-11-24 08:07:40,129 | INFO     | aborting loop
[2025-11-24 03:30:57] 2025-11-24 08:07:40,130 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 03:30:57] 2025-11-24 08:07:40,219 | INFO     | [job] retrieve thread has finished
[2025-11-24 03:30:57] 2025-11-24 08:07:40,435 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 03:30:57] 2025-11-24 08:07:40,483 | INFO     | [data] control thread has finished
[2025-11-24 03:30:57] 2025-11-24 08:07:40,502 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 03:30:57] 2025-11-24 08:07:40,559 | INFO     | [payload] control thread has finished
[2025-11-24 03:30:57] 2025-11-24 08:07:40,852 | INFO     | [job] queue monitor thread has finished
[2025-11-24 03:30:57] 2025-11-24 08:07:40,906 | INFO     | [job] validate thread has finished
[2025-11-24 03:30:57] 2025-11-24 08:07:40,947 | INFO     | all job control threads have been joined
[2025-11-24 03:30:57] 2025-11-24 08:07:41,137 | INFO     | [job] job monitor thread has finished
[2025-11-24 03:30:57] 2025-11-24 08:07:41,197 | INFO     | [payload] failed_post thread has finished
[2025-11-24 03:30:57] 2025-11-24 08:07:41,197 | INFO     | [payload] validate_post thread has finished
[2025-11-24 03:30:57] 2025-11-24 08:07:41,222 | INFO     | [data] copytool_out thread has finished
[2025-11-24 03:30:57] 2025-11-24 08:07:41,496 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 03:30:57] 2025-11-24 08:07:41,553 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 03:30:57] 2025-11-24 08:07:41,579 | INFO     | [data] copytool_in thread has finished
[2025-11-24 03:30:57] 2025-11-24 08:07:41,954 | INFO     | [job] control thread has finished
[2025-11-24 03:30:57] 2025-11-24 08:07:44,148 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 03:30:57] 2025-11-24 08:07:57,074 | INFO     | [monitor] cgroup control has ended
[2025-11-24 03:30:57] 2025-11-24 08:07:57,849 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139871119738688)>', '<ExcThread(monitor, started 139870626371328)>']
[2025-11-24 03:30:57] 2025-11-24 08:08:02,877 | INFO     | all workflow threads have been joined
[2025-11-24 03:30:57] 2025-11-24 08:08:02,877 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 03:30:57] 2025-11-24 08:08:02,877 | INFO     | traces error code: 0
[2025-11-24 03:30:57] 2025-11-24 08:08:02,877 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 03:30:57] 2025-11-24 08:08:07,950 | INFO     | PID=1616924 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 03:30:57] 2025-11-24 08:08:07,950 | INFO     | .. there are 80 such processes running
[2025-11-24 03:30:57] 2025-11-24 08:08:07,951 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 03:30:57] 2025-11-24 08:08:07,951 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 03:30:57] 2025-11-24 08:08:07,951 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 03:30:57] 2025-11-24 08:08:07,951 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 03:30:57] 2025-11-24 08:08:07,952 | INFO     | [monitor] control thread has ended
[2025-11-24 03:30:57] 2025-11-24 08:08:08,900 [wrapper] ==== pilot stdout END ====
[2025-11-24 03:30:57] 2025-11-24 08:08:08,923 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 03:30:57] 2025-11-24 08:08:08,939 [wrapper] pilotpid: 1616924
[2025-11-24 03:30:57] 2025-11-24 08:08:08,973 [wrapper] Pilot exit status: 0
[2025-11-24 03:30:57] 2025-11-24 08:08:09,060 [wrapper] pandaids: 6895336143 6895336143
[2025-11-24 03:30:57] 2025-11-24 08:08:09,276 [wrapper] cleanup supervisor_pilot 2727739 1616925
[2025-11-24 03:30:57] 2025-11-24 08:08:09,305 [wrapper] Test setup, not cleaning
[2025-11-24 03:30:57] 2025-11-24 08:08:09,322 [wrapper] apfmon messages muted
[2025-11-24 03:30:57] 2025-11-24 08:08:09,367 [wrapper] ==== wrapper stdout END ====
[2025-11-24 03:30:57] 2025-11-24 08:08:09,387 [wrapper] ==== wrapper stderr END ====
[2025-11-24 03:30:57]  *** Error codes and diagnostics ***
[2025-11-24 03:30:57]     "exeErrorCode": 0,
[2025-11-24 03:30:57]     "exeErrorDiag": "",
[2025-11-24 03:30:57]     "pilotErrorCode": 0,
[2025-11-24 03:30:57]     "pilotErrorDiag": "",
[2025-11-24 03:30:57]  *** Listing of results directory ***
[2025-11-24 03:30:57] total 1739912
[2025-11-24 03:30:57] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-24 03:30:57] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 00:12 pilot3.tar.gz
[2025-11-24 03:30:57] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 00:12 queuedata.json
[2025-11-24 03:30:57] -rwx------. 1 boincer umatlas     36292 Nov 22 00:12 runpilot2-wrapper.sh
[2025-11-24 03:30:57] -rw-r--r--. 1 boincer umatlas       100 Nov 22 14:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 03:30:57] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 14:01 run_atlas
[2025-11-24 03:30:57] -rw-r--r--. 1 boincer umatlas       105 Nov 22 14:01 job.xml
[2025-11-24 03:30:57] -rw-r--r--. 3 boincer umatlas 409396417 Nov 22 14:01 EVNT.47483658._000271.pool.root.1
[2025-11-24 03:30:57] -rw-r--r--. 3 boincer umatlas 409396417 Nov 22 14:01 ATLAS.root_0
[2025-11-24 03:30:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 14:01 start_atlas.sh
[2025-11-24 03:30:57] drwxrwx--x. 2 boincer umatlas        68 Nov 22 14:01 shared
[2025-11-24 03:30:57] -rw-r--r--. 2 boincer umatlas    590100 Nov 22 14:01 input.tar.gz
[2025-11-24 03:30:57] -rw-r--r--. 1 boincer umatlas         0 Nov 22 14:01 boinc_lockfile
[2025-11-24 03:30:57] -rw-r--r--. 1 boincer umatlas      2786 Nov 22 20:28 pandaJob.out
[2025-11-24 03:30:57] -rw-------. 1 boincer umatlas    989784 Nov 22 20:29 agis_schedconf.cvmfs.json
[2025-11-24 03:30:57] -rw-r--r--. 1 boincer umatlas       534 Nov 24 02:37 boinc_task_state.xml
[2025-11-24 03:30:57] -rw-------. 1 boincer umatlas 929865744 Nov 24 03:05 HITS.47556137._002679.pool.root.1
[2025-11-24 03:30:57] -rw-------. 1 boincer umatlas      1059 Nov 24 03:06 memory_monitor_summary.json
[2025-11-24 03:30:57] -rw-------. 1 boincer umatlas   1526164 Nov 24 03:06 agis_ddmendpoints.agis.ALL.json
[2025-11-24 03:30:57] -rw-------. 1 boincer umatlas   2698589 Nov 24 03:06 log.47556137._002679.job.log.tgz.1
[2025-11-24 03:30:57] -rw-------. 1 boincer umatlas      8631 Nov 24 03:07 heartbeat.json
[2025-11-24 03:30:57] -rw-------. 1 boincer umatlas        96 Nov 24 03:08 pilot_heartbeat.json
[2025-11-24 03:30:57] -rw-------. 1 boincer umatlas       823 Nov 24 03:08 pilotlog.txt
[2025-11-24 03:30:57] -rw-------. 1 boincer umatlas  11849551 Nov 24 03:08 log.47556137._002679.job.log.1
[2025-11-24 03:30:57] -rw-------. 1 boincer umatlas       353 Nov 24 03:08 output.list
[2025-11-24 03:30:57] -rw-r--r--. 1 boincer umatlas       620 Nov 24 03:08 runtime_log
[2025-11-24 03:30:57] -rw-------. 1 boincer umatlas  14571520 Nov 24 03:08 result.tar.gz
[2025-11-24 03:30:57] -rw-------. 1 boincer umatlas       787 Nov 24 03:08 xWMMDmi6ug8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxyJKDmBl7bqm.diag
[2025-11-24 03:30:57] -rw-r--r--. 1 boincer umatlas      8899 Nov 24 03:08 runtime_log.err
[2025-11-24 03:30:57] -rw-r--r--. 1 boincer umatlas        30 Nov 24 03:30 wrapper_checkpoint.txt
[2025-11-24 03:30:57] -rw-r--r--. 1 boincer umatlas      6800 Nov 24 03:30 init_data.xml
[2025-11-24 03:30:57] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 03:30 boinc_mmap_file
[2025-11-24 03:30:57] -rw-r--r--. 1 boincer umatlas     24083 Nov 24 03:30 stderr.txt
[2025-11-24 03:30:57] HITS file was successfully produced:
[2025-11-24 03:30:57] -rw-------. 1 boincer umatlas 929865744 Nov 24 03:05 shared/HITS.pool.root.1
[2025-11-24 03:30:57]  *** Contents of shared directory: ***
[2025-11-24 03:30:57] total 1322708
[2025-11-24 03:30:57] -rw-r--r--. 3 boincer umatlas 409396417 Nov 22 14:01 ATLAS.root_0
[2025-11-24 03:30:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 14:01 start_atlas.sh
[2025-11-24 03:30:57] -rw-r--r--. 2 boincer umatlas    590100 Nov 22 14:01 input.tar.gz
[2025-11-24 03:30:57] -rw-------. 1 boincer umatlas 929865744 Nov 24 03:05 HITS.pool.root.1
[2025-11-24 03:30:57] -rw-------. 1 boincer umatlas  14571520 Nov 24 03:08 result.tar.gz
03:30:59 (1594270): run_atlas exited; CPU time 273007.614416
03:30:59 (1594270): called boinc_finish(0)

</stderr_txt>
]]>

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