Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:56:30 (869144): wrapper (7.7.26015): starting
08:56:30 (869144): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 08:56:30] Arguments: --nthreads 3
[2025-11-25 08:56:30] Threads: 3
[2025-11-25 08:56:30] Checking for CVMFS
[2025-11-25 08:56:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 08:56:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 08:56:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 08:56:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 08:56:31] 2.9.2.0 3803052 9512 68224 153275 3 81 34642205 36864000 0 130560 0 3417201 99.923 494797 7555 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 08:56:31] CVMFS is ok
[2025-11-25 08:56:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 08:56:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 08:56:31] Further information can be found at the LHC@home message board.
[2025-11-25 08:56:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 08:56:31] Checking for apptainer binary...
[2025-11-25 08:56:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 08:56:31] Running /usr/bin/apptainer --version
[2025-11-25 08:56:31] apptainer version 1.4.1-1.1
[2025-11-25 08:56:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 08:56:31] thA333
[2025-11-25 08:56:31] apptainer works
[2025-11-25 08:56:31] Set ATHENA_PROC_NUMBER=3
[2025-11-25 08:56:31] Set ATHENA_CORE_NUMBER=3
[2025-11-25 08:56:31] Starting ATLAS job with PandaID=6895328335
[2025-11-25 08:56:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 17:29:32]  *** The last 200 lines of the pilot log: ***
[2025-11-25 17:29:32] 2025-11-25 16:28:31,487 | INFO     | process IDs to be killed: [879328] (in reverse order)
[2025-11-25 17:29:32] 2025-11-25 16:28:31,513 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 17:29:32] 2025-11-25 16:28:31,513 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 17:29:32] 2025-11-25 16:28:31,514 | INFO     | did not find any defunct processes belonging to 879328
[2025-11-25 17:29:32] 2025-11-25 16:28:31,515 | INFO     | did not find any defunct processes belonging to 879328
[2025-11-25 17:29:32] 2025-11-25 16:28:31,516 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 17:29:32] 2025-11-25 16:28:31,516 | INFO     | ready for new job
[2025-11-25 17:29:32] 2025-11-25 16:28:31,516 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 17:29:32] 2025-11-25 16:28:31,517 | INFO     | ***************************************
[2025-11-25 17:29:32] 2025-11-25 16:28:31,517 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 17:29:32] 2025-11-25 16:28:31,517 | INFO     | ***************************************
[2025-11-25 17:29:32] 2025-11-25 16:28:31,517 | INFO     | 
[2025-11-25 17:29:32] 2025-11-25 16:28:31,517 | INFO     | architecture information:
[2025-11-25 17:29:32] 2025-11-25 16:28:31,518 | INFO     | executing command: cat /etc/os-release
[2025-11-25 17:29:32] 2025-11-25 16:28:31,527 | INFO     | cat /etc/os-release:
[2025-11-25 17:29:32] NAME="CentOS Linux"
[2025-11-25 17:29:32] VERSION="7 (Core)"
[2025-11-25 17:29:32] ID="centos"
[2025-11-25 17:29:32] ID_LIKE="rhel fedora"
[2025-11-25 17:29:32] VERSION_ID="7"
[2025-11-25 17:29:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 17:29:32] ANSI_COLOR="0;31"
[2025-11-25 17:29:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 17:29:32] HOME_URL="https://www.centos.org/"
[2025-11-25 17:29:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 17:29:32] 
[2025-11-25 17:29:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 17:29:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 17:29:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 17:29:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 17:29:32] 
[2025-11-25 17:29:32] 2025-11-25 16:28:31,527 | INFO     | ***************************************
[2025-11-25 17:29:32] 2025-11-25 16:28:32,031 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-25 17:29:32] 2025-11-25 16:28:32,044 | INFO     | sufficient remaining disk space (222018142208 B)
[2025-11-25 17:29:32] 2025-11-25 16:28:32,044 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 17:29:32] 2025-11-25 16:28:32,044 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 17:29:32] 2025-11-25 16:28:32,044 | INFO     | update_server=False
[2025-11-25 17:29:32] 2025-11-25 16:28:32,044 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 17:29:32] 2025-11-25 16:28:32,044 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 17:29:32] 2025-11-25 16:28:32,409 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 17:29:32] 2025-11-25 16:28:32,409 | INFO     | aborting loop
[2025-11-25 17:29:32] 2025-11-25 16:28:32,596 | INFO     | all data control threads have been joined
[2025-11-25 17:29:32] 2025-11-25 16:28:32,680 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 17:29:32] 2025-11-25 16:28:32,706 | INFO     | all payload control threads have been joined
[2025-11-25 17:29:32] 2025-11-25 16:28:33,050 | INFO     | [job] queue monitor thread has finished
[2025-11-25 17:29:32] 2025-11-25 16:28:33,050 | INFO     | [job] retrieve thread has finished
[2025-11-25 17:29:32] 2025-11-25 16:28:33,108 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 17:29:32] 2025-11-25 16:28:33,135 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 17:29:32] 2025-11-25 16:28:33,239 | INFO     | [job] validate thread has finished
[2025-11-25 17:29:32] 2025-11-25 16:28:33,267 | INFO     | [data] copytool_in thread has finished
[2025-11-25 17:29:32] 2025-11-25 16:28:33,297 | INFO     | [payload] validate_post thread has finished
[2025-11-25 17:29:32] 2025-11-25 16:28:33,415 | INFO     | [payload] failed_post thread has finished
[2025-11-25 17:29:32] 2025-11-25 16:28:33,415 | INFO     | [job] job monitor thread has finished
[2025-11-25 17:29:32] 2025-11-25 16:28:33,520 | INFO     | all job control threads have been joined
[2025-11-25 17:29:32] 2025-11-25 16:28:33,602 | INFO     | [data] control thread has finished
[2025-11-25 17:29:32] 2025-11-25 16:28:33,699 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 17:29:32] 2025-11-25 16:28:33,712 | INFO     | [payload] control thread has finished
[2025-11-25 17:29:32] 2025-11-25 16:28:33,865 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 17:29:32] 2025-11-25 16:28:34,526 | INFO     | [job] control thread has finished
[2025-11-25 17:29:32] 2025-11-25 16:28:34,686 | INFO     | [data] copytool_out thread has finished
[2025-11-25 17:29:32] 2025-11-25 16:28:37,706 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 17:29:32] 2025-11-25 16:28:42,499 | INFO     | job.realtimelogging is not enabled
[2025-11-25 17:29:32] 2025-11-25 16:28:43,500 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 17:29:32] 2025-11-25 16:29:02,905 | INFO     | PID=872881 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 17:29:32] 2025-11-25 16:29:02,906 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 17:29:32] 2025-11-25 16:29:02,906 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 17:29:32] 2025-11-25 16:29:02,906 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 17:29:32] 2025-11-25 16:29:25,746 | INFO     | [monitor] cgroup control has ended
[2025-11-25 17:29:32] 2025-11-25 16:29:26,934 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139810174019392)>', '<ExcThread(monitor, started 139809666344704)>']
[2025-11-25 17:29:32] 2025-11-25 16:29:27,034 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 17:29:32] 2025-11-25 16:29:27,034 | INFO     | [monitor] control thread has ended
[2025-11-25 17:29:32] 2025-11-25 16:29:31,960 | INFO     | all workflow threads have been joined
[2025-11-25 17:29:32] 2025-11-25 16:29:31,960 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 17:29:32] 2025-11-25 16:29:31,961 | INFO     | traces error code: 0
[2025-11-25 17:29:32] 2025-11-25 16:29:31,961 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 17:29:32] 2025-11-25 16:29:32,007 [wrapper] ==== pilot stdout END ====
[2025-11-25 17:29:32] 2025-11-25 16:29:32,010 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 17:29:32] 2025-11-25 16:29:32,013 [wrapper] pilotpid: 872881
[2025-11-25 17:29:32] 2025-11-25 16:29:32,015 [wrapper] Pilot exit status: 0
[2025-11-25 17:29:32] 2025-11-25 16:29:32,023 [wrapper] pandaids: 6895328335
[2025-11-25 17:29:32] 2025-11-25 16:29:32,043 [wrapper] cleanup supervisor_pilot  932762 872882
[2025-11-25 17:29:32] 2025-11-25 16:29:32,046 [wrapper] Test setup, not cleaning
[2025-11-25 17:29:32] 2025-11-25 16:29:32,048 [wrapper] apfmon messages muted
[2025-11-25 17:29:32] 2025-11-25 16:29:32,051 [wrapper] ==== wrapper stdout END ====
[2025-11-25 17:29:32] 2025-11-25 16:29:32,053 [wrapper] ==== wrapper stderr END ====
[2025-11-25 17:29:32]  *** Error codes and diagnostics ***
[2025-11-25 17:29:32]     "exeErrorCode": 0,
[2025-11-25 17:29:32]     "exeErrorDiag": "",
[2025-11-25 17:29:32]     "pilotErrorCode": 0,
[2025-11-25 17:29:32]     "pilotErrorDiag": "",
[2025-11-25 17:29:32]  *** Listing of results directory ***
[2025-11-25 17:29:32] total 1297800
[2025-11-25 17:29:32] -rw-r--r-- 1 boinc boinc    576529 Nov 21 17:49 pilot3.tar.gz
[2025-11-25 17:29:32] -rwx------ 1 boinc boinc     36292 Nov 21 17:59 runpilot2-wrapper.sh
[2025-11-25 17:29:32] -rw-r--r-- 1 boinc boinc      5112 Nov 21 17:59 queuedata.json
[2025-11-25 17:29:32] -rw-r--r-- 1 boinc boinc       100 Nov 25 08:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 17:29:32] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 08:56 run_atlas
[2025-11-25 17:29:32] -rw-r--r-- 1 boinc boinc       105 Nov 25 08:56 job.xml
[2025-11-25 17:29:32] -rw-r--r-- 2 boinc boinc 410485161 Nov 25 08:56 EVNT.47483658._000072.pool.root.1
[2025-11-25 17:29:32] -rw-r--r-- 2 boinc boinc    590094 Nov 25 08:56 input.tar.gz
[2025-11-25 17:29:32] -rw-r--r-- 2 boinc boinc     15847 Nov 25 08:56 start_atlas.sh
[2025-11-25 17:29:32] drwxrwx--x 2 boinc boinc      4096 Nov 25 08:56 shared
[2025-11-25 17:29:32] -rw-r--r-- 1 boinc boinc         0 Nov 25 08:56 boinc_setup_complete
[2025-11-25 17:29:32] -rw-r--r-- 1 boinc boinc      6198 Nov 25 08:56 init_data.xml
[2025-11-25 17:29:32] -rw-r--r-- 1 boinc boinc         0 Nov 25 08:56 boinc_lockfile
[2025-11-25 17:29:32] -rw-r--r-- 1 boinc boinc      2784 Nov 25 08:56 pandaJob.out
[2025-11-25 17:29:32] -rw------- 1 boinc boinc    991830 Nov 25 08:56 agis_schedconf.cvmfs.json
[2025-11-25 17:29:32] drwx------ 5 boinc boinc      4096 Nov 25 08:56 pilot3
[2025-11-25 17:29:32] -rw-r--r-- 1 boinc boinc       531 Nov 25 17:25 boinc_task_state.xml
[2025-11-25 17:29:32] -rw------- 1 boinc boinc 903593549 Nov 25 17:27 HITS.47556137._000717.pool.root.1
[2025-11-25 17:29:32] -rw------- 1 boinc boinc        95 Nov 25 17:28 pilot_heartbeat.json
[2025-11-25 17:29:32] -rw------- 1 boinc boinc      1024 Nov 25 17:28 memory_monitor_summary.json
[2025-11-25 17:29:32] -rw------- 1 boinc boinc   1516240 Nov 25 17:28 agis_ddmendpoints.agis.ALL.json
[2025-11-25 17:29:32] -rw------- 1 boinc boinc   1186554 Nov 25 17:28 log.47556137._000717.job.log.tgz.1
[2025-11-25 17:29:32] -rw------- 1 boinc boinc      8557 Nov 25 17:28 heartbeat.json
[2025-11-25 17:29:32] -rw-r--r-- 1 boinc boinc        28 Nov 25 17:29 wrapper_checkpoint.txt
[2025-11-25 17:29:32] -rw-r--r-- 1 boinc boinc      8192 Nov 25 17:29 boinc_mmap_file
[2025-11-25 17:29:32] -rw------- 1 boinc boinc      4823 Nov 25 17:29 pilotlog.txt
[2025-11-25 17:29:32] -rw------- 1 boinc boinc   4293196 Nov 25 17:29 log.47556137._000717.job.log.1
[2025-11-25 17:29:32] -rw------- 1 boinc boinc       353 Nov 25 17:29 output.list
[2025-11-25 17:29:32] -rw-r--r-- 1 boinc boinc       620 Nov 25 17:29 runtime_log
[2025-11-25 17:29:32] -rw------- 1 boinc boinc   5498880 Nov 25 17:29 result.tar.gz
[2025-11-25 17:29:32] -rw-r--r-- 1 boinc boinc      8898 Nov 25 17:29 runtime_log.err
[2025-11-25 17:29:32] -rw------- 1 boinc boinc       665 Nov 25 17:29 VesMDmkejg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmbZJKDmT1D2Um.diag
[2025-11-25 17:29:32] -rw-r--r-- 1 boinc boinc     10394 Nov 25 17:29 stderr.txt
[2025-11-25 17:29:32] HITS file was successfully produced:
[2025-11-25 17:29:32] -rw------- 1 boinc boinc 903593549 Nov 25 17:27 shared/HITS.pool.root.1
[2025-11-25 17:29:32]  *** Contents of shared directory: ***
[2025-11-25 17:29:32] total 1289260
[2025-11-25 17:29:32] -rw-r--r-- 2 boinc boinc 410485161 Nov 25 08:56 ATLAS.root_0
[2025-11-25 17:29:32] -rw-r--r-- 2 boinc boinc    590094 Nov 25 08:56 input.tar.gz
[2025-11-25 17:29:32] -rw-r--r-- 2 boinc boinc     15847 Nov 25 08:56 start_atlas.sh
[2025-11-25 17:29:32] -rw------- 1 boinc boinc 903593549 Nov 25 17:27 HITS.pool.root.1
[2025-11-25 17:29:32] -rw------- 1 boinc boinc   5498880 Nov 25 17:29 result.tar.gz
17:29:33 (869144): run_atlas exited; CPU time 90797.984712
17:29:33 (869144): called boinc_finish(0)

</stderr_txt>
]]>

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