Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:18:42 (3940653): wrapper (7.7.26015): starting
07:18:42 (3940653): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 07:18:42] Arguments: --nthreads 12
[2025-11-22 07:18:42] Threads: 12
[2025-11-22 07:18:42] Checking for CVMFS
[2025-11-22 07:18:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 07:18:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 07:18:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 07:18:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 07:18:43] 2.11.5.0 2718463 22502 224712 153175 0 192 31341907 45568001 22623 130560 0 141825631 99.786 95326927 20383 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-22 07:18:43] CVMFS is ok
[2025-11-22 07:18:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 07:18:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 07:18:43] Further information can be found at the LHC@home message board.
[2025-11-22 07:18:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 07:18:43] Checking for apptainer binary...
[2025-11-22 07:18:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 07:18:43] Running /usr/bin/apptainer --version
[2025-11-22 07:18:43] apptainer version 1.4.1-1.el9
[2025-11-22 07:18:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 07:18:43] wns0043.triumf.lcg
[2025-11-22 07:18:43] apptainer works
[2025-11-22 07:18:43] Set ATHENA_PROC_NUMBER=12
[2025-11-22 07:18:43] Set ATHENA_CORE_NUMBER=12
[2025-11-22 07:18:43] Starting ATLAS job with PandaID=6895334506
[2025-11-22 07:18:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 07:24:07]  *** The last 200 lines of the pilot log: ***
[2025-11-22 07:24:07] 2025-11-22 15:23:23,397 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 07:24:07] 2025-11-22 15:23:23,398 | WARNING  | wrong length of table data, x=[1763824781.0, 1763824842.0], y=[2309.0, 372872.0] (must be same and length>=4)
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | could have reported an average CPU frequency of 1537 MHz (4 samples)
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | ..............................
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | . Timing measurements:
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | . get job = 0 s
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | . initial setup = 3 s
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | . payload setup = 10 s
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | . stage-in = 0 s
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | . payload execution = 98 s
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | . stage-out = 0 s
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | . log creation = 0 s
[2025-11-22 07:24:07] 2025-11-22 15:23:23,400 | INFO     | ..............................
[2025-11-22 07:24:07] 2025-11-22 15:23:23,400 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 07:24:07] 2025-11-22 15:23:23,400 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895334506/pilotlog.txt
[2025-11-22 07:24:07] 2025-11-22 15:23:23,423 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-22 07:24:07] - Log from pilotlog.txt -
[2025-11-22 07:24:07] 2025-11-22 15:23:23,395 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895334506/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 07:24:07] 2025-11-22 15:23:23,396 | INFO     | extracted standard info from prmon json
[2025-11-22 07:24:07] 2025-11-22 15:23:23,396 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 07:24:07] 2025-11-22 15:23:23,396 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 07:24:07] 2025-11-22 15:23:23,397 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 07:24:07] 2025-11-22 15:23:23,397 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 07:24:07] 2025-11-22 15:23:23,398 | WARNING  | wrong length of table data, x=[1763824781.0, 1763824842.0], y=[2309.0, 372872.0] (must be same and length>=4)
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | could have reported an average CPU frequency of 1537 MHz (4 samples)
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | ..............................
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | . Timing measurements:
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | . get job = 0 s
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | . initial setup = 3 s
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | . payload setup = 10 s
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | . stage-in = 0 s
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | . payload execution = 98 s
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | . stage-out = 0 s
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | . log creation = 0 s
[2025-11-22 07:24:07] 2025-11-22 15:23:23,400 | INFO     | ..............................
[2025-11-22 07:24:07] 2025-11-22 15:23:23,400 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 07:24:07] 2025-11-22 15:23:23,400 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895334506/pilotlog.txt
[2025-11-22 07:24:07] 2025-11-22 15:23:23,423 | WARNING  | 
[2025-11-22 07:24:07] [begin log extracts]
[2025-11-22 07:24:07] - Log from pilotlog.txt -
[2025-11-22 07:24:07] 2025-11-22 15:23:23,395 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895334506/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 07:24:07] 2025-11-22 15:23:23,396 | INFO     | extracted standard info from prmon json
[2025-11-22 07:24:07] 2025-11-22 15:23:23,396 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 07:24:07] 2025-11-22 15:23:23,396 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 07:24:07] 2025-11-22 15:23:23,397 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 07:24:07] 2025-11-22 15:23:23,397 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 07:24:07] 2025-11-22 15:23:23,398 | WARNING  | wrong length of table data, x=[1763824781.0, 1763824842.0], y=[2309.0, 372872.0] (must be same and length>=4)
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | could have reported an average CPU frequency of 1537 MHz (4 samples)
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | ..............................
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | . Timing measurements:
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | . get job = 0 s
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | . initial setup = 3 s
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | . payload setup = 10 s
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | . stage-in = 0 s
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | . payload execution = 98 s
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | . stage-out = 0 s
[2025-11-22 07:24:07] 2025-11-22 15:23:23,399 | INFO     | . log creation = 0 s
[2025-11-22 07:24:07] 2025-11-22 15:23:23,400 | INFO     | ..............................
[2025-11-22 07:24:07] 2025-11-22 15:23:23,400 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 07:24:07] 2025-11-22 15:23:23,400 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895334506/pilotlog.txt
[2025-11-22 07:24:07] [end log extracts]
[2025-11-22 07:24:07] 2025-11-22 15:23:23,424 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-22 07:24:07] 2025-11-22 15:23:23,425 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-22 07:24:07] 2025-11-22 15:23:23,520 | INFO     | 
[2025-11-22 07:24:07] 2025-11-22 15:23:23,520 | INFO     | job summary report
[2025-11-22 07:24:07] 2025-11-22 15:23:23,520 | INFO     | --------------------------------------------------
[2025-11-22 07:24:07] 2025-11-22 15:23:23,520 | INFO     | PanDA job id: 6895334506
[2025-11-22 07:24:07] 2025-11-22 15:23:23,521 | INFO     | task id: 47556149
[2025-11-22 07:24:07] 2025-11-22 15:23:23,521 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-22 07:21:07,265 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-22 07:24:07] 2025-11-22 15:23:23,521 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-22 07:24:07] 2025-11-22 15:23:23,521 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 07:24:07] 2025-11-22 15:23:23,521 | INFO     | pilot state: failed 
[2025-11-22 07:24:07] 2025-11-22 15:23:23,521 | INFO     | transexitcode: 65
[2025-11-22 07:24:07] 2025-11-22 15:23:23,521 | INFO     | exeerrorcode: 65
[2025-11-22 07:24:07] 2025-11-22 15:23:23,521 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-22 07:24:07] 2025-11-22 15:23:23,521 | INFO     | exitcode: 65
[2025-11-22 07:24:07] 2025-11-22 15:23:23,521 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-22 07:24:07] 2025-11-22 15:23:23,521 | INFO     | cpuconsumptiontime: 69 s
[2025-11-22 07:24:07] 2025-11-22 15:23:23,522 | INFO     | nevents: 0
[2025-11-22 07:24:07] 2025-11-22 15:23:23,522 | INFO     | neventsw: 0
[2025-11-22 07:24:07] 2025-11-22 15:23:23,522 | INFO     | pid: 3952081
[2025-11-22 07:24:07] 2025-11-22 15:23:23,522 | INFO     | pgrp: 3952081
[2025-11-22 07:24:07] 2025-11-22 15:23:23,522 | INFO     | corecount: 12
[2025-11-22 07:24:07] 2025-11-22 15:23:23,522 | INFO     | event service: False
[2025-11-22 07:24:07] 2025-11-22 15:23:23,522 | INFO     | sizes: {0: 2298580, 1: 2298779, 8: 2299041, 12: 2299069, 112: 2324493, 113: 2328783, 116: 2328939, 241: 2329133}
[2025-11-22 07:24:07] 2025-11-22 15:23:23,522 | INFO     | --------------------------------------------------
[2025-11-22 07:24:07] 2025-11-22 15:23:23,522 | INFO     | 
[2025-11-22 07:24:07] 2025-11-22 15:23:23,522 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-22 07:24:07] 2025-11-22 15:23:23,572 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 07:24:07] 2025-11-22 15:23:23,572 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 07:24:07] 2025-11-22 15:23:23,572 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 07:24:07] 2025-11-22 15:23:23,572 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 07:24:07] 2025-11-22 15:23:23,572 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 07:24:07] 2025-11-22 15:23:23,573 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 07:24:07] 2025-11-22 15:23:23,573 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 07:24:07] 2025-11-22 15:23:23,573 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 07:24:07] 2025-11-22 15:23:23,576 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 07:24:07] 2025-11-22 15:23:23,576 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 07:24:07] 2025-11-22 15:23:23,576 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 07:24:07] 2025-11-22 15:23:23,576 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 07:24:07] 2025-11-22 15:23:23,576 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 07:24:07] 2025-11-22 15:23:23,576 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 07:24:07] 2025-11-22 15:23:23,576 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 07:24:07] 2025-11-22 15:23:23,576 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 07:24:07] 2025-11-22 15:23:23,576 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 07:24:07] 2025-11-22 15:23:23,577 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 07:24:07] 2025-11-22 15:23:23,577 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 07:24:07] 2025-11-22 15:23:23,577 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 07:24:07] 2025-11-22 15:23:23,580 | INFO     | job 6895334506 has completed (purged errors)
[2025-11-22 07:24:07] 2025-11-22 15:23:23,580 | INFO     | overall cleanup function is called
[2025-11-22 07:24:07] 2025-11-22 15:23:24,588 | INFO     | --- collectZombieJob: --- 10, [3952081]
[2025-11-22 07:24:07] 2025-11-22 15:23:24,588 | INFO     | zombie collector waiting for pid 3952081
[2025-11-22 07:24:07] 2025-11-22 15:23:24,588 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 07:24:07] 2025-11-22 15:23:24,588 | INFO     | collected zombie processes
[2025-11-22 07:24:07] 2025-11-22 15:23:24,589 | INFO     | will attempt to kill all subprocesses of pid=3952081
[2025-11-22 07:24:07] 2025-11-22 15:23:25,009 | INFO     | process IDs to be killed: [3952081] (in reverse order)
[2025-11-22 07:24:07] 2025-11-22 15:23:25,131 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 07:24:07] 2025-11-22 15:23:25,132 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 07:24:07] 2025-11-22 15:23:25,146 | INFO     | did not find any defunct processes belonging to 3952081
[2025-11-22 07:24:07] 2025-11-22 15:23:25,158 | INFO     | did not find any defunct processes belonging to 3952081
[2025-11-22 07:24:07] 2025-11-22 15:23:25,160 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 07:24:07] 2025-11-22 15:23:25,160 | INFO     | ready for new job
[2025-11-22 07:24:07] 2025-11-22 15:23:25,160 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 07:24:07] 2025-11-22 15:23:25,162 | INFO     | ***************************************
[2025-11-22 07:24:07] 2025-11-22 15:23:25,162 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 07:24:07] 2025-11-22 15:23:25,162 | INFO     | ***************************************
[2025-11-22 07:24:07] 2025-11-22 15:23:25,162 | INFO     | 
[2025-11-22 07:24:07] 2025-11-22 15:23:25,165 | INFO     | architecture information:
[2025-11-22 07:24:07] 2025-11-22 15:23:25,166 | INFO     | executing command: cat /etc/os-release
[2025-11-22 07:24:07] 2025-11-22 15:23:25,182 | INFO     | cat /etc/os-release:
[2025-11-22 07:24:07] NAME="CentOS Linux"
[2025-11-22 07:24:07] VERSION="7 (Core)"
[2025-11-22 07:24:07] ID="centos"
[2025-11-22 07:24:07] ID_LIKE="rhel fedora"
[2025-11-22 07:24:07] VERSION_ID="7"
[2025-11-22 07:24:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 07:24:07] ANSI_COLOR="0;31"
[2025-11-22 07:24:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 07:24:07] HOME_URL="https://www.centos.org/"
[2025-11-22 07:24:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 07:24:07] 
[2025-11-22 07:24:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 07:24:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 07:24:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 07:24:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 07:24:07] 
[2025-11-22 07:24:07] 2025-11-22 15:23:25,183 | INFO     | ***************************************
[2025-11-22 07:24:07] 2025-11-22 15:23:25,685 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-22 07:24:07] 2025-11-22 15:23:25,710 | INFO     | sufficient remaining disk space (1681364353024 B)
[2025-11-22 07:24:07] 2025-11-22 15:23:25,710 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 07:24:07] 2025-11-22 15:23:25,711 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 07:24:07] 2025-11-22 15:23:25,711 | INFO     | update_server=False
[2025-11-22 07:24:07] 2025-11-22 15:23:25,711 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 07:24:07] 2025-11-22 15:23:25,711 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 07:24:07] 2025-11-22 15:23:25,712 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 07:24:07] 2025-11-22 15:23:25,712 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 07:24:07] 2025-11-22 15:23:25,712 | INFO     | aborting loop
[2025-11-22 07:24:07] 2025-11-22 15:23:26,486 | INFO     | all job control threads have been joined
[2025-11-22 07:24:07] 2025-11-22 15:23:26,717 | INFO     | [job] retrieve thread has finished
[2025-11-22 07:24:07] 2025-11-22 15:23:26,717 | INFO     | [job] job monitor thread has finished
[2025-11-22 07:24:07] 2025-11-22 15:23:26,752 | INFO     | all data control threads have been joined
[2025-11-22 07:24:07] 2025-11-22 15:23:26,879 | INFO     | all payload control threads have been joined
[2025-11-22 07:24:07] 2025-11-22 15:23:26,960 | INFO     | [payload] failed_post thread has finished
[2025-11-22 07:24:07] 2025-11-22 15:23:27,154 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 07:24:07] 2025-11-22 15:23:27,172 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 07:24:07] 2025-11-22 15:23:27,335 | INFO     | [data] copytool_in thread has finished
[2025-11-22 07:24:07] 2025-11-22 15:23:27,422 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 07:24:07] 2025-11-22 15:23:27,492 | INFO     | [job] control thread has finished
[2025-11-22 07:24:07] 2025-11-22 15:23:27,496 | INFO     | [payload] validate_post thread has finished
[2025-11-22 07:24:07] 2025-11-22 15:23:27,601 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 07:24:07] 2025-11-22 15:23:27,720 | INFO     | [data] copytool_out thread has finished
[2025-11-22 07:24:07] 2025-11-22 15:23:27,757 | INFO     | [data] control thread has finished
[2025-11-22 07:24:07] 2025-11-22 15:23:27,884 | INFO     | [payload] control thread has finished
[2025-11-22 07:24:07] 2025-11-22 15:23:28,202 | INFO     | [job] validate thread has finished
[2025-11-22 07:24:07] 2025-11-22 15:23:28,531 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 07:24:07] 2025-11-22 15:23:29,536 | INFO     | [job] queue monitor thread has finished
[2025-11-22 07:24:07] 2025-11-22 15:23:29,721 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 07:24:07] 2025-11-22 15:23:55,266 | INFO     | PID=3945462 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 07:24:07] 2025-11-22 15:23:55,266 | INFO     | .. there are 34 such processes running
[2025-11-22 07:24:07] 2025-11-22 15:23:55,266 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 07:24:07] 2025-11-22 15:23:55,266 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 07:24:07] 2025-11-22 15:23:55,266 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 07:24:07] 2025-11-22 15:24:00,596 | INFO     | [monitor] cgroup control has ended
[2025-11-22 07:24:07] 2025-11-22 15:24:01,589 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140008644220736)>', '<ExcThread(monitor, started 140007947892480)>']
[2025-11-22 07:24:07] 2025-11-22 15:24:02,302 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 07:24:07] 2025-11-22 15:24:02,303 | INFO     | [monitor] control thread has ended
[2025-11-22 07:24:07] 2025-11-22 15:24:06,614 | INFO     | all workflow threads have been joined
[2025-11-22 07:24:07] 2025-11-22 15:24:06,614 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 07:24:07] 2025-11-22 15:24:06,615 | INFO     | traces error code: 0
[2025-11-22 07:24:07] 2025-11-22 15:24:06,615 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 07:24:07] 2025-11-22 15:24:06,823 [wrapper] ==== pilot stdout END ====
[2025-11-22 07:24:07] 2025-11-22 15:24:06,828 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 07:24:07] 2025-11-22 15:24:06,838 [wrapper] pilotpid: 3945462
[2025-11-22 07:24:07] 2025-11-22 15:24:06,843 [wrapper] Pilot exit status: 0
[2025-11-22 07:24:07] 2025-11-22 15:24:06,871 [wrapper] pandaids: 6895334506
[2025-11-22 07:24:07] 2025-11-22 15:24:06,984 [wrapper] cleanup supervisor_pilot 3945468 3945463
[2025-11-22 07:24:07] 2025-11-22 15:24:06,987 [wrapper] Test setup, not cleaning
[2025-11-22 07:24:07] 2025-11-22 15:24:06,990 [wrapper] apfmon messages muted
[2025-11-22 07:24:07] 2025-11-22 15:24:07,004 [wrapper] ==== wrapper stdout END ====
[2025-11-22 07:24:07] 2025-11-22 15:24:07,011 [wrapper] ==== wrapper stderr END ====
[2025-11-22 07:24:07]  *** Error codes and diagnostics ***
[2025-11-22 07:24:07]     "exeErrorCode": 65,
[2025-11-22 07:24:07]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-22 07:24:07]     "pilotErrorCode": 1305,
[2025-11-22 07:24:07]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-22 07:24:07]  *** Listing of results directory ***
[2025-11-22 07:24:07] total 403676
[2025-11-22 07:24:07] -rw-r--r--. 1 boinc boinc    576529 Nov 21 19:44 pilot3.tar.gz
[2025-11-22 07:24:07] -rwx------. 1 boinc boinc     36292 Nov 21 19:54 runpilot2-wrapper.sh
[2025-11-22 07:24:07] -rw-r--r--. 1 boinc boinc      5112 Nov 21 19:54 queuedata.json
[2025-11-22 07:24:07] -rw-r--r--. 1 boinc boinc       100 Nov 22 07:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 07:24:07] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 07:18 run_atlas
[2025-11-22 07:24:07] -rw-r--r--. 1 boinc boinc       105 Nov 22 07:18 job.xml
[2025-11-22 07:24:07] -rw-r--r--. 1 boinc boinc      6595 Nov 22 07:18 init_data.xml
[2025-11-22 07:24:07] -rw-r--r--. 2 boinc boinc 409143373 Nov 22 07:18 EVNT.47483658._001061.pool.root.1
[2025-11-22 07:24:07] -rw-r--r--. 2 boinc boinc    590100 Nov 22 07:18 input.tar.gz
[2025-11-22 07:24:07] -rw-r--r--. 2 boinc boinc     15847 Nov 22 07:18 start_atlas.sh
[2025-11-22 07:24:07] drwxrwx--x. 2 boinc boinc      4096 Nov 22 07:18 shared
[2025-11-22 07:24:07] -rw-r--r--. 1 boinc boinc         0 Nov 22 07:18 boinc_lockfile
[2025-11-22 07:24:07] -rw-r--r--. 1 boinc boinc      2784 Nov 22 07:18 pandaJob.out
[2025-11-22 07:24:07] -rw-------. 1 boinc boinc    989768 Nov 22 07:18 agis_schedconf.cvmfs.json
[2025-11-22 07:24:07] -rw-------. 1 boinc boinc   1526164 Nov 22 07:18 agis_ddmendpoints.agis.ALL.json
[2025-11-22 07:24:07] drwx------. 5 boinc boinc      4096 Nov 22 07:19 pilot3
[2025-11-22 07:24:07] -rw-r--r--. 1 boinc boinc       524 Nov 22 07:20 boinc_task_state.xml
[2025-11-22 07:24:07] -rw-------. 1 boinc boinc       993 Nov 22 07:21 memory_monitor_summary.json
[2025-11-22 07:24:07] -rw-------. 1 boinc boinc     48443 Nov 22 07:21 log.47556149._000476.job.log.tgz.1
[2025-11-22 07:24:07] -rw-------. 1 boinc boinc        95 Nov 22 07:23 pilot_heartbeat.json
[2025-11-22 07:24:07] -rw-------. 1 boinc boinc     10336 Nov 22 07:23 heartbeat.json
[2025-11-22 07:24:07] -rw-r--r--. 1 boinc boinc      8192 Nov 22 07:24 boinc_mmap_file
[2025-11-22 07:24:07] -rw-r--r--. 1 boinc boinc        23 Nov 22 07:24 wrapper_checkpoint.txt
[2025-11-22 07:24:07] -rw-------. 1 boinc boinc      4823 Nov 22 07:24 pilotlog.txt
[2025-11-22 07:24:07] -rw-------. 1 boinc boinc     99474 Nov 22 07:24 log.47556149._000476.job.log.1
[2025-11-22 07:24:07] -rw-------. 1 boinc boinc       186 Nov 22 07:24 output.list
[2025-11-22 07:24:07] -rw-r--r--. 1 boinc boinc       620 Nov 22 07:24 runtime_log
[2025-11-22 07:24:07] -rw-------. 1 boinc boinc    174080 Nov 22 07:24 result.tar.gz
[2025-11-22 07:24:07] -rw-r--r--. 1 boinc boinc      8636 Nov 22 07:24 runtime_log.err
[2025-11-22 07:24:07] -rw-------. 1 boinc boinc       647 Nov 22 07:24 jucKDm1stg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmEwHKDmVgcW0n.diag
[2025-11-22 07:24:07] -rw-r--r--. 1 boinc boinc     22483 Nov 22 07:24 stderr.txt
[2025-11-22 07:24:07] No HITS result produced
[2025-11-22 07:24:07]  *** Contents of shared directory: ***
[2025-11-22 07:24:07] total 400328
[2025-11-22 07:24:07] -rw-r--r--. 2 boinc boinc 409143373 Nov 22 07:18 ATLAS.root_0
[2025-11-22 07:24:07] -rw-r--r--. 2 boinc boinc    590100 Nov 22 07:18 input.tar.gz
[2025-11-22 07:24:07] -rw-r--r--. 2 boinc boinc     15847 Nov 22 07:18 start_atlas.sh
[2025-11-22 07:24:07] -rw-------. 1 boinc boinc    174080 Nov 22 07:24 result.tar.gz
07:24:08 (3940653): run_atlas exited; CPU time 66.727313
07:24:08 (3940653): called boinc_finish(0)

</stderr_txt>
]]>

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