Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:03 (3979666): wrapper (7.7.26015): starting
00:04:03 (3979666): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 00:04:03] Arguments: --nthreads 8
[2025-11-23 00:04:03] Threads: 8
[2025-11-23 00:04:03] Checking for CVMFS
[2025-11-23 00:04:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:04:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:04:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:04:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:04:08] 2.13.3.0 9371 25151 308996 153197 0 597 18180011 32935937 28887 16776704 0 139652795 99.776 79710220 34514 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 00:04:08] CVMFS is ok
[2025-11-23 00:04:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:04:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:04:08] Further information can be found at the LHC@home message board.
[2025-11-23 00:04:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:04:08] Checking for apptainer binary...
[2025-11-23 00:04:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:04:08] Running /usr/bin/apptainer --version
[2025-11-23 00:04:09] apptainer version 1.4.4-1.el9
[2025-11-23 00:04:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:04:11] c-8-1.aglt2.org
[2025-11-23 00:04:11] apptainer works
[2025-11-23 00:04:11] Set ATHENA_PROC_NUMBER=8
[2025-11-23 00:04:11] Set ATHENA_CORE_NUMBER=8
[2025-11-23 00:04:11] Starting ATLAS job with PandaID=6894252917
[2025-11-23 00:04:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 12:36:32]  *** The last 200 lines of the pilot log: ***
[2025-11-24 12:36:32] 2025-11-24 17:35:33,383 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:36:32] 2025-11-24 17:35:34,228 | INFO     | PID=3998084 has CPU usage=18.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-24 12:36:32] 2025-11-24 17:35:34,228 | INFO     | .. there are 43 such processes running
[2025-11-24 12:36:32] 2025-11-24 17:35:35,229 | INFO     | time since job start (131355s) is within the limit (172800.0s)
[2025-11-24 12:36:32] 2025-11-24 17:35:35,886 | INFO     | monitor loop #7609: job 0:6894252917 is in state 'finished'
[2025-11-24 12:36:32] 2025-11-24 17:35:35,886 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:36:32] 2025-11-24 17:35:37,236 | INFO     | time since job start (131357s) is within the limit (172800.0s)
[2025-11-24 12:36:32] 2025-11-24 17:35:37,236 | INFO     | 131370s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-24 12:36:32] 2025-11-24 17:35:38,409 | INFO     | monitor loop #7610: job 0:6894252917 is in state 'finished'
[2025-11-24 12:36:32] 2025-11-24 17:35:38,409 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:36:32] 2025-11-24 17:35:39,242 | INFO     | time since job start (131359s) is within the limit (172800.0s)
[2025-11-24 12:36:32] 2025-11-24 17:35:40,918 | INFO     | monitor loop #7611: job 0:6894252917 is in state 'finished'
[2025-11-24 12:36:32] 2025-11-24 17:35:40,918 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:36:32] 2025-11-24 17:35:41,067 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 12:36:32] 2025-11-24 17:35:41,080 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.806
[2025-11-24 12:36:32] 2025-11-24 17:35:41,093 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6894252917/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 12:36:32] 2025-11-24 17:35:41,093 | INFO     | extracted standard info from prmon json
[2025-11-24 12:36:32] 2025-11-24 17:35:41,094 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 12:36:32] 2025-11-24 17:35:41,094 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 12:36:32] 2025-11-24 17:35:41,136 | INFO     | fitting pss+swap vs Time
[2025-11-24 12:36:32] 2025-11-24 17:35:41,139 | INFO     | sum of square deviations: 3077246142639.3516
[2025-11-24 12:36:32] 2025-11-24 17:35:41,272 | INFO     | time since job start (131361s) is within the limit (172800.0s)
[2025-11-24 12:36:32] 2025-11-24 17:35:41,327 | INFO     | sum of deviations: 15464104707880.006
[2025-11-24 12:36:32] 2025-11-24 17:35:41,328 | INFO     | mean x: 1763940178.617962
[2025-11-24 12:36:32] 2025-11-24 17:35:41,328 | INFO     | mean y: 2837964.3154955795
[2025-11-24 12:36:32] 2025-11-24 17:35:41,328 | INFO     | intersect: -8861501888.975737
[2025-11-24 12:36:32] 2025-11-24 17:35:41,331 | INFO     | chi2: 24.33025862504577
[2025-11-24 12:36:32] 2025-11-24 17:35:41,340 | INFO     | sum of square deviations: 3055817391604.9985
[2025-11-24 12:36:32] 2025-11-24 17:35:41,477 | INFO     | sum of deviations: 16160055494661.598
[2025-11-24 12:36:32] 2025-11-24 17:35:41,477 | INFO     | mean x: 1763940026.124067
[2025-11-24 12:36:32] 2025-11-24 17:35:41,477 | INFO     | mean y: 2842916.542910448
[2025-11-24 12:36:32] 2025-11-24 17:35:41,477 | INFO     | intersect: -9325387490.72235
[2025-11-24 12:36:32] 2025-11-24 17:35:41,480 | INFO     | chi2: 21.283990667269332
[2025-11-24 12:36:32] 2025-11-24 17:35:41,480 | INFO     | current chi2=21.283990667269332 (change=12.520491478214632 %)
[2025-11-24 12:36:32] 2025-11-24 17:35:41,480 | INFO     | right removable region: 2143
[2025-11-24 12:36:32] 2025-11-24 17:35:41,483 | INFO     | sum of square deviations: 3055813959744.9937
[2025-11-24 12:36:32] 2025-11-24 17:35:41,618 | INFO     | sum of deviations: 14559786168706.36
[2025-11-24 12:36:32] 2025-11-24 17:35:41,618 | INFO     | mean x: 1763940331.124067
[2025-11-24 12:36:32] 2025-11-24 17:35:41,618 | INFO     | mean y: 2844398.994869403
[2025-11-24 12:36:32] 2025-11-24 17:35:41,618 | INFO     | intersect: -8401657437.126958
[2025-11-24 12:36:32] 2025-11-24 17:35:41,621 | INFO     | chi2: 19.500313077502007
[2025-11-24 12:36:32] 2025-11-24 17:35:41,625 | INFO     | current chi2=19.500313077502007 (change=19.85159969722548 %)
[2025-11-24 12:36:32] 2025-11-24 17:35:41,625 | INFO     | left removable region: 10
[2025-11-24 12:36:32] 2025-11-24 17:35:41,628 | INFO     | sum of square deviations: 3009018232771.4126
[2025-11-24 12:36:32] 2025-11-24 17:35:41,855 | INFO     | sum of deviations: 14608273698634.475
[2025-11-24 12:36:32] 2025-11-24 17:35:41,856 | INFO     | mean x: 1763940300.636662
[2025-11-24 12:36:32] 2025-11-24 17:35:41,856 | INFO     | mean y: 2856232.9399906234
[2025-11-24 12:36:32] 2025-11-24 17:35:41,856 | INFO     | intersect: -8560775060.187329
[2025-11-24 12:36:32] 2025-11-24 17:35:41,863 | INFO     | chi2: 12.058503266373872
[2025-11-24 12:36:32] 2025-11-24 17:35:41,863 | INFO     | current memory leak: 4.85 B/s (using 2133 data points, chi2=12.06)
[2025-11-24 12:36:32] 2025-11-24 17:35:41,874 | INFO     | could have reported an average CPU frequency of 2599 MHz (75 samples)
[2025-11-24 12:36:32] 2025-11-24 17:35:41,875 | INFO     | ..............................
[2025-11-24 12:36:32] 2025-11-24 17:35:41,875 | INFO     | . Timing measurements:
[2025-11-24 12:36:32] 2025-11-24 17:35:41,875 | INFO     | . get job = 0 s
[2025-11-24 12:36:32] 2025-11-24 17:35:41,875 | INFO     | . initial setup = 13 s
[2025-11-24 12:36:32] 2025-11-24 17:35:41,875 | INFO     | . payload setup = 86 s
[2025-11-24 12:36:32] 2025-11-24 17:35:41,875 | INFO     | . stage-in = 0 s
[2025-11-24 12:36:32] 2025-11-24 17:35:41,875 | INFO     | . payload execution = 131109 s
[2025-11-24 12:36:32] 2025-11-24 17:35:41,875 | INFO     | . stage-out = 7 s
[2025-11-24 12:36:32] 2025-11-24 17:35:41,876 | INFO     | . log creation = 1 s
[2025-11-24 12:36:32] 2025-11-24 17:35:41,876 | INFO     | ..............................
[2025-11-24 12:36:32] 2025-11-24 17:35:42,265 | INFO     | 
[2025-11-24 12:36:32] 2025-11-24 17:35:42,272 | INFO     | job summary report
[2025-11-24 12:36:32] 2025-11-24 17:35:42,272 | INFO     | --------------------------------------------------
[2025-11-24 12:36:32] 2025-11-24 17:35:42,272 | INFO     | PanDA job id: 6894252917
[2025-11-24 12:36:32] 2025-11-24 17:35:42,273 | INFO     | task id: 47533967
[2025-11-24 12:36:32] 2025-11-24 17:35:42,273 | INFO     | errors: (none)
[2025-11-24 12:36:32] 2025-11-24 17:35:42,273 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 12:36:32] 2025-11-24 17:35:42,273 | INFO     | pilot state: finished 
[2025-11-24 12:36:32] 2025-11-24 17:35:42,273 | INFO     | transexitcode: 0
[2025-11-24 12:36:32] 2025-11-24 17:35:42,273 | INFO     | exeerrorcode: 0
[2025-11-24 12:36:32] 2025-11-24 17:35:42,273 | INFO     | exeerrordiag: 
[2025-11-24 12:36:32] 2025-11-24 17:35:42,273 | INFO     | exitcode: 0
[2025-11-24 12:36:32] 2025-11-24 17:35:42,273 | INFO     | exitmsg: OK
[2025-11-24 12:36:32] 2025-11-24 17:35:42,273 | INFO     | cpuconsumptiontime: 296795 s
[2025-11-24 12:36:32] 2025-11-24 17:35:42,274 | INFO     | nevents: 1000
[2025-11-24 12:36:32] 2025-11-24 17:35:42,274 | INFO     | neventsw: 0
[2025-11-24 12:36:32] 2025-11-24 17:35:42,274 | INFO     | pid: 4024910
[2025-11-24 12:36:32] 2025-11-24 17:35:42,274 | INFO     | pgrp: 4024910
[2025-11-24 12:36:32] 2025-11-24 17:35:42,274 | INFO     | corecount: 8
[2025-11-24 12:36:32] 2025-11-24 17:35:42,274 | INFO     | event service: False
[2025-11-24 12:36:32] 2025-11-24 17:35:42,274 | INFO     | sizes: {0: 2298578, 2: 2298634, 4: 2298690, 5: 2298690, 6: 2298889, 7: 2298917, 18: 2299073, 30: 2299101, 42: 2299129, 53: 2299185, 64: 2299213, 69: 2299811, 76: 2
[2025-11-24 12:36:32] 2025-11-24 17:35:42,274 | INFO     | --------------------------------------------------
[2025-11-24 12:36:32] 2025-11-24 17:35:42,274 | INFO     | 
[2025-11-24 12:36:32] 2025-11-24 17:35:42,274 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-24 12:36:32] 2025-11-24 17:35:42,367 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 12:36:32] 2025-11-24 17:35:42,368 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 12:36:32] 2025-11-24 17:35:42,368 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 12:36:32] 2025-11-24 17:35:42,368 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 12:36:32] 2025-11-24 17:35:42,368 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 12:36:32] 2025-11-24 17:35:42,368 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 12:36:32] 2025-11-24 17:35:42,368 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 12:36:32] 2025-11-24 17:35:42,368 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 12:36:32] 2025-11-24 17:35:42,369 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 12:36:32] 2025-11-24 17:35:42,369 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 12:36:32] 2025-11-24 17:35:42,369 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 12:36:32] 2025-11-24 17:35:42,369 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 12:36:32] 2025-11-24 17:35:42,369 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 12:36:32] 2025-11-24 17:35:42,369 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 12:36:32] 2025-11-24 17:35:42,369 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 12:36:32] 2025-11-24 17:35:42,369 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 12:36:32] 2025-11-24 17:35:42,370 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 12:36:32] 2025-11-24 17:35:42,370 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 12:36:32] 2025-11-24 17:35:42,370 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 12:36:32] 2025-11-24 17:35:42,374 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 12:36:32] 2025-11-24 17:35:42,374 | INFO     | job 6894252917 has completed (purged errors)
[2025-11-24 12:36:32] 2025-11-24 17:35:42,375 | INFO     | overall cleanup function is called
[2025-11-24 12:36:32] 2025-11-24 17:35:43,407 | INFO     | --- collectZombieJob: --- 10, [4024910]
[2025-11-24 12:36:32] 2025-11-24 17:35:43,407 | INFO     | zombie collector waiting for pid 4024910
[2025-11-24 12:36:32] 2025-11-24 17:35:43,408 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 12:36:32] 2025-11-24 17:35:43,408 | INFO     | collected zombie processes
[2025-11-24 12:36:32] 2025-11-24 17:35:43,408 | INFO     | will attempt to kill all subprocesses of pid=4024910
[2025-11-24 12:36:32] 2025-11-24 17:35:44,497 | INFO     | process IDs to be killed: [4024910] (in reverse order)
[2025-11-24 12:36:32] 2025-11-24 17:35:44,828 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 12:36:32] 2025-11-24 17:35:44,828 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 12:36:32] 2025-11-24 17:35:44,859 | INFO     | did not find any defunct processes belonging to 4024910
[2025-11-24 12:36:32] 2025-11-24 17:35:44,889 | INFO     | did not find any defunct processes belonging to 4024910
[2025-11-24 12:36:32] 2025-11-24 17:35:44,898 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 12:36:32] 2025-11-24 17:35:44,898 | INFO     | ready for new job
[2025-11-24 12:36:32] 2025-11-24 17:35:44,898 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 12:36:32] 2025-11-24 17:35:44,911 | INFO     | ***************************************
[2025-11-24 12:36:32] 2025-11-24 17:35:44,911 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 12:36:32] 2025-11-24 17:35:44,911 | INFO     | ***************************************
[2025-11-24 12:36:32] 2025-11-24 17:35:44,912 | INFO     | 
[2025-11-24 12:36:32] 2025-11-24 17:35:44,913 | INFO     | architecture information:
[2025-11-24 12:36:32] 2025-11-24 17:35:44,921 | INFO     | executing command: cat /etc/os-release
[2025-11-24 12:36:32] 2025-11-24 17:35:44,991 | INFO     | cat /etc/os-release:
[2025-11-24 12:36:32] NAME="CentOS Linux"
[2025-11-24 12:36:32] VERSION="7 (Core)"
[2025-11-24 12:36:32] ID="centos"
[2025-11-24 12:36:32] ID_LIKE="rhel fedora"
[2025-11-24 12:36:32] VERSION_ID="7"
[2025-11-24 12:36:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 12:36:32] ANSI_COLOR="0;31"
[2025-11-24 12:36:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 12:36:32] HOME_URL="https://www.centos.org/"
[2025-11-24 12:36:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 12:36:32] 
[2025-11-24 12:36:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 12:36:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 12:36:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 12:36:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 12:36:32] 
[2025-11-24 12:36:32] 2025-11-24 17:35:44,992 | INFO     | ***************************************
[2025-11-24 12:36:32] 2025-11-24 17:35:45,528 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-24 12:36:32] 2025-11-24 17:35:45,620 | INFO     | sufficient remaining disk space (70327992320 B)
[2025-11-24 12:36:32] 2025-11-24 17:35:45,621 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 12:36:32] 2025-11-24 17:35:45,621 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 12:36:32] 2025-11-24 17:35:45,621 | INFO     | update_server=False
[2025-11-24 12:36:32] 2025-11-24 17:35:45,621 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 12:36:32] 2025-11-24 17:35:45,622 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 12:36:32] 2025-11-24 17:35:45,957 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 12:36:32] 2025-11-24 17:35:45,957 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 12:36:32] 2025-11-24 17:35:45,958 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:36:32] 2025-11-24 17:35:45,958 | INFO     | will abort loop
[2025-11-24 12:36:32] 2025-11-24 17:35:46,087 | INFO     | all data control threads have been joined
[2025-11-24 12:36:32] 2025-11-24 17:35:46,165 | INFO     | all payload control threads have been joined
[2025-11-24 12:36:32] 2025-11-24 17:35:46,585 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 12:36:32] 2025-11-24 17:35:46,627 | INFO     | [job] retrieve thread has finished
[2025-11-24 12:36:32] 2025-11-24 17:35:46,717 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 12:36:32] 2025-11-24 17:35:46,963 | INFO     | [job] job monitor thread has finished
[2025-11-24 12:36:32] 2025-11-24 17:35:47,041 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 12:36:32] 2025-11-24 17:35:47,098 | INFO     | [data] control thread has finished
[2025-11-24 12:36:32] 2025-11-24 17:35:47,171 | INFO     | [payload] control thread has finished
[2025-11-24 12:36:32] 2025-11-24 17:35:47,223 | INFO     | all job control threads have been joined
[2025-11-24 12:36:32] 2025-11-24 17:35:47,251 | INFO     | [payload] validate_post thread has finished
[2025-11-24 12:36:32] 2025-11-24 17:35:47,304 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:36:32] 2025-11-24 17:35:47,545 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 12:36:32] 2025-11-24 17:35:47,546 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 12:36:32] 2025-11-24 17:35:47,610 | INFO     | [data] copytool_in thread has finished
[2025-11-24 12:36:32] 2025-11-24 17:35:47,921 | INFO     | [job] validate thread has finished
[2025-11-24 12:36:32] 2025-11-24 17:35:48,220 | INFO     | [payload] failed_post thread has finished
[2025-11-24 12:36:32] 2025-11-24 17:35:48,229 | INFO     | [job] control thread has finished
[2025-11-24 12:36:32] 2025-11-24 17:35:48,310 | INFO     | [job] queue monitor thread has finished
[2025-11-24 12:36:32] 2025-11-24 17:35:48,595 | INFO     | [data] copytool_out thread has finished
[2025-11-24 12:36:32] 2025-11-24 17:35:49,638 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 12:36:32] 2025-11-24 17:36:15,214 | INFO     | PID=3998084 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 12:36:32] 2025-11-24 17:36:15,216 | INFO     | .. there are 43 such processes running
[2025-11-24 12:36:32] 2025-11-24 17:36:15,216 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 12:36:32] 2025-11-24 17:36:15,217 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 12:36:32] 2025-11-24 17:36:15,217 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 12:36:32] 2025-11-24 17:36:24,571 | INFO     | [monitor] cgroup control has ended
[2025-11-24 12:36:32] 2025-11-24 17:36:25,545 [wrapper] supervise_pilot (15 min periods counter: 147)
[2025-11-24 12:36:32] 2025-11-24 17:36:25,926 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140128843835200)>', '<ExcThread(monitor, started 140127988864768)>']
[2025-11-24 12:36:32] 2025-11-24 17:36:26,291 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 12:36:32] 2025-11-24 17:36:26,292 | INFO     | [monitor] control thread has ended
[2025-11-24 12:36:32] 2025-11-24 17:36:30,987 | INFO     | all workflow threads have been joined
[2025-11-24 12:36:32] 2025-11-24 17:36:30,987 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 12:36:32] 2025-11-24 17:36:30,999 | INFO     | traces error code: 0
[2025-11-24 12:36:32] 2025-11-24 17:36:31,000 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 12:36:32] 2025-11-24 17:36:31,865 [wrapper] ==== pilot stdout END ====
[2025-11-24 12:36:32] 2025-11-24 17:36:31,871 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 12:36:32] 2025-11-24 17:36:31,873 [wrapper] pilotpid: 3998084
[2025-11-24 12:36:32] 2025-11-24 17:36:31,876 [wrapper] Pilot exit status: 0
[2025-11-24 12:36:32] 2025-11-24 17:36:31,931 [wrapper] pandaids: 6894252917
[2025-11-24 12:36:32] 2025-11-24 17:36:32,013 [wrapper] cleanup supervisor_pilot 3223912 3998085
[2025-11-24 12:36:32] 2025-11-24 17:36:32,018 [wrapper] Test setup, not cleaning
[2025-11-24 12:36:32] 2025-11-24 17:36:32,035 [wrapper] apfmon messages muted
[2025-11-24 12:36:32] 2025-11-24 17:36:32,041 [wrapper] ==== wrapper stdout END ====
[2025-11-24 12:36:32] 2025-11-24 17:36:32,044 [wrapper] ==== wrapper stderr END ====
[2025-11-24 12:36:32]  *** Error codes and diagnostics ***
[2025-11-24 12:36:32]     "exeErrorCode": 0,
[2025-11-24 12:36:32]     "exeErrorDiag": "",
[2025-11-24 12:36:32]     "pilotErrorCode": 0,
[2025-11-24 12:36:32]     "pilotErrorDiag": "",
[2025-11-24 12:36:32]  *** Listing of results directory ***
[2025-11-24 12:36:32] total 1335980
[2025-11-24 12:36:32] -rwx------. 1 boincer umatlas     36292 Nov 20 21:10 runpilot2-wrapper.sh
[2025-11-24 12:36:32] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 21:10 queuedata.json
[2025-11-24 12:36:32] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 21:10 pilot3.tar.gz
[2025-11-24 12:36:32] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 12:36:32] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:04 run_atlas
[2025-11-24 12:36:32] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:04 job.xml
[2025-11-24 12:36:32] -rw-r--r--. 2 boincer umatlas 411239637 Nov 23 00:04 EVNT.47493127._002119.pool.root.1
[2025-11-24 12:36:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:04 start_atlas.sh
[2025-11-24 12:36:32] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:04 shared
[2025-11-24 12:36:32] -rw-r--r--. 2 boincer umatlas    590085 Nov 23 00:04 input.tar.gz
[2025-11-24 12:36:32] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:04 boinc_lockfile
[2025-11-24 12:36:32] -rw-r--r--. 1 boincer umatlas      2785 Nov 23 00:04 pandaJob.out
[2025-11-24 12:36:32] -rw-------. 1 boincer umatlas        57 Nov 23 00:04 setup.sh.local
[2025-11-24 12:36:32] -rw-------. 1 boincer umatlas    989784 Nov 23 00:06 agis_schedconf.cvmfs.json
[2025-11-24 12:36:32] drwx------. 5 boincer umatlas      4096 Nov 23 00:06 pilot3
[2025-11-24 12:36:32] -rw-r--r--. 1 boincer umatlas       533 Nov 24 12:13 boinc_task_state.xml
[2025-11-24 12:36:32] -rw-r--r--. 1 boincer umatlas      6659 Nov 24 12:27 init_data.xml
[2025-11-24 12:36:32] -rw-------. 1 boincer umatlas 914423355 Nov 24 12:34 HITS.47533967._000902.pool.root.1
[2025-11-24 12:36:32] -rw-------. 1 boincer umatlas      1076 Nov 24 12:35 memory_monitor_summary.json
[2025-11-24 12:36:32] -rw-------. 1 boincer umatlas   1516227 Nov 24 12:35 agis_ddmendpoints.agis.ALL.json
[2025-11-24 12:36:32] -rw-------. 1 boincer umatlas   2993295 Nov 24 12:35 log.47533967._000902.job.log.tgz.1
[2025-11-24 12:36:32] -rw-------. 1 boincer umatlas        95 Nov 24 12:35 pilot_heartbeat.json
[2025-11-24 12:36:32] -rw-------. 1 boincer umatlas      8678 Nov 24 12:35 heartbeat.json
[2025-11-24 12:36:32] -rw-------. 1 boincer umatlas      5010 Nov 24 12:36 pilotlog.txt
[2025-11-24 12:36:32] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 12:36 boinc_mmap_file
[2025-11-24 12:36:32] -rw-r--r--. 1 boincer umatlas        29 Nov 24 12:36 wrapper_checkpoint.txt
[2025-11-24 12:36:32] -rw-------. 1 boincer umatlas  16242793 Nov 24 12:36 log.47533967._000902.job.log.1
[2025-11-24 12:36:32] -rw-------. 1 boincer umatlas       353 Nov 24 12:36 output.list
[2025-11-24 12:36:32] -rw-r--r--. 1 boincer umatlas       620 Nov 24 12:36 runtime_log
[2025-11-24 12:36:32] -rw-------. 1 boincer umatlas  19251200 Nov 24 12:36 result.tar.gz
[2025-11-24 12:36:32] -rw-r--r--. 1 boincer umatlas      9329 Nov 24 12:36 runtime_log.err
[2025-11-24 12:36:32] -rw-------. 1 boincer umatlas       665 Nov 24 12:36 B0OKDmmmVg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZsIKDmPybucm.diag
[2025-11-24 12:36:32] -rw-r--r--. 1 boincer umatlas     21863 Nov 24 12:36 stderr.txt
[2025-11-24 12:36:32] HITS file was successfully produced:
[2025-11-24 12:36:32] -rw-------. 1 boincer umatlas 914423355 Nov 24 12:34 shared/HITS.pool.root.1
[2025-11-24 12:36:32]  *** Contents of shared directory: ***
[2025-11-24 12:36:32] total 1313996
[2025-11-24 12:36:32] -rw-r--r--. 2 boincer umatlas 411239637 Nov 23 00:04 ATLAS.root_0
[2025-11-24 12:36:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:04 start_atlas.sh
[2025-11-24 12:36:32] -rw-r--r--. 2 boincer umatlas    590085 Nov 23 00:04 input.tar.gz
[2025-11-24 12:36:32] -rw-------. 1 boincer umatlas 914423355 Nov 24 12:34 HITS.pool.root.1
[2025-11-24 12:36:32] -rw-------. 1 boincer umatlas  19251200 Nov 24 12:36 result.tar.gz
12:36:33 (3979666): run_atlas exited; CPU time 300889.715439
12:36:33 (3979666): called boinc_finish(0)

</stderr_txt>
]]>

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