Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:44:01 (8175): wrapper (7.7.26015): starting
09:44:01 (8175): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 09:44:01] Arguments: --nthreads 8
[2025-11-22 09:44:01] Threads: 8
[2025-11-22 09:44:01] Checking for CVMFS
[2025-11-22 09:44:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 09:44:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 09:44:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 09:44:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 09:44:01] 2.11.2.0 31887 763 55952 153174 1 81 14611240 20275201 1 130560 0 254091 99.983 27615 38622 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 09:44:01] CVMFS is ok
[2025-11-22 09:44:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 09:44:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 09:44:01] Further information can be found at the LHC@home message board.
[2025-11-22 09:44:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 09:44:01] Checking for apptainer binary...
[2025-11-22 09:44:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 09:44:01] Running /usr/bin/apptainer --version
[2025-11-22 09:44:01] apptainer version 1.3.2-1.el7
[2025-11-22 09:44:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 09:44:03] c-204-12.aglt2.org
[2025-11-22 09:44:03] apptainer works
[2025-11-22 09:44:03] Set ATHENA_PROC_NUMBER=8
[2025-11-22 09:44:03] Set ATHENA_CORE_NUMBER=8
[2025-11-22 09:44:03] Starting ATLAS job with PandaID=6895328155
[2025-11-22 09:44:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:00:02 (14957): wrapper (7.7.26015): starting
14:00:02 (14957): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 14:00:02] Arguments: --nthreads 8
[2025-11-22 14:00:02] Threads: 8
[2025-11-22 14:00:02] This job has been restarted, cleaning up previous attempt
[2025-11-22 14:00:02] Checking for CVMFS
[2025-11-22 14:00:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 14:00:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 14:00:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 14:00:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 14:00:03] 2.11.2.0 31887 1019 59536 153181 1 56 14917288 20275200 1 130560 0 378547 99.980 36956 38616 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 14:00:03] CVMFS is ok
[2025-11-22 14:00:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 14:00:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 14:00:03] Further information can be found at the LHC@home message board.
[2025-11-22 14:00:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 14:00:03] Checking for apptainer binary...
[2025-11-22 14:00:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 14:00:03] Running /usr/bin/apptainer --version
[2025-11-22 14:00:03] apptainer version 1.3.2-1.el7
[2025-11-22 14:00:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 14:00:04] c-204-12.aglt2.org
[2025-11-22 14:00:04] apptainer works
[2025-11-22 14:00:04] Set ATHENA_PROC_NUMBER=8
[2025-11-22 14:00:04] Set ATHENA_CORE_NUMBER=8
[2025-11-22 14:00:04] Starting ATLAS job with PandaID=6895328155
[2025-11-22 14:00:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 02:32:42]  *** The last 200 lines of the pilot log: ***
[2025-11-23 02:32:42] 2025-11-23 07:32:24,702 | INFO     | monitor loop #3319: job 0:6895328155 is in state 'finished'
[2025-11-23 02:32:42] 2025-11-23 07:32:24,703 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 02:32:42] 2025-11-23 07:32:24,833 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 02:32:42] 2025-11-23 07:32:24,836 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2025-11-23 02:32:42] 2025-11-23 07:32:24,838 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895328155/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 02:32:42] 2025-11-23 07:32:24,838 | INFO     | extracted standard info from prmon json
[2025-11-23 02:32:42] 2025-11-23 07:32:24,839 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 02:32:42] 2025-11-23 07:32:24,839 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 02:32:42] 2025-11-23 07:32:24,850 | INFO     | fitting pss+swap vs Time
[2025-11-23 02:32:42] 2025-11-23 07:32:24,851 | INFO     | sum of square deviations: 125144092557.29356
[2025-11-23 02:32:42] 2025-11-23 07:32:24,862 | INFO     | sum of deviations: 828117666620.242
[2025-11-23 02:32:42] 2025-11-23 07:32:24,862 | INFO     | mean x: 1763860561.585927
[2025-11-23 02:32:42] 2025-11-23 07:32:24,862 | INFO     | mean y: 2877787.8308525034
[2025-11-23 02:32:42] 2025-11-23 07:32:24,863 | INFO     | intersect: -11669140144.89958
[2025-11-23 02:32:42] 2025-11-23 07:32:24,863 | INFO     | chi2: 5.728962944137622
[2025-11-23 02:32:42] 2025-11-23 07:32:24,864 | INFO     | sum of square deviations: 122621228478.06561
[2025-11-23 02:32:42] 2025-11-23 07:32:24,875 | INFO     | sum of deviations: 1058341451940.4586
[2025-11-23 02:32:42] 2025-11-23 07:32:24,875 | INFO     | mean x: 1763860409.0899184
[2025-11-23 02:32:42] 2025-11-23 07:32:24,876 | INFO     | mean y: 2891699.129427793
[2025-11-23 02:32:42] 2025-11-23 07:32:24,876 | INFO     | intersect: -15220953385.006567
[2025-11-23 02:32:42] 2025-11-23 07:32:24,876 | INFO     | chi2: 2.8866941386722447
[2025-11-23 02:32:42] 2025-11-23 07:32:24,877 | INFO     | current chi2=2.8866941386722447 (change=49.61227421402397 %)
[2025-11-23 02:32:42] 2025-11-23 07:32:24,877 | INFO     | sum of square deviations: 120132504573.81335
[2025-11-23 02:32:42] 2025-11-23 07:32:24,888 | INFO     | sum of deviations: 1152834718091.174
[2025-11-23 02:32:42] 2025-11-23 07:32:24,888 | INFO     | mean x: 1763860256.5939643
[2025-11-23 02:32:42] 2025-11-23 07:32:24,889 | INFO     | mean y: 2897483.085048011
[2025-11-23 02:32:42] 2025-11-23 07:32:24,889 | INFO     | intersect: -16923739890.177382
[2025-11-23 02:32:42] 2025-11-23 07:32:24,890 | INFO     | chi2: 2.2838244738653426
[2025-11-23 02:32:42] 2025-11-23 07:32:24,890 | INFO     | current chi2=2.2838244738653426 (change=20.88443166632805 %)
[2025-11-23 02:32:42] 2025-11-23 07:32:24,890 | INFO     | right removable region: 728
[2025-11-23 02:32:42] 2025-11-23 07:32:24,891 | INFO     | sum of square deviations: 122620964348.06537
[2025-11-23 02:32:42] 2025-11-23 07:32:24,902 | INFO     | sum of deviations: 638712135926.8932
[2025-11-23 02:32:42] 2025-11-23 07:32:24,902 | INFO     | mean x: 1763860714.0899184
[2025-11-23 02:32:42] 2025-11-23 07:32:24,902 | INFO     | mean y: 2889216.228882834
[2025-11-23 02:32:42] 2025-11-23 07:32:24,902 | INFO     | intersect: -9184766827.447319
[2025-11-23 02:32:42] 2025-11-23 07:32:24,903 | INFO     | chi2: 3.7567061733181544
[2025-11-23 02:32:42] 2025-11-23 07:32:24,903 | INFO     | current chi2=3.7567061733181544 (change=34.426069605453705 %)
[2025-11-23 02:32:42] 2025-11-23 07:32:24,904 | INFO     | sum of square deviations: 120132110636.36487
[2025-11-23 02:32:42] 2025-11-23 07:32:24,915 | INFO     | sum of deviations: 581076600406.7966
[2025-11-23 02:32:42] 2025-11-23 07:32:24,915 | INFO     | mean x: 1763860866.589849
[2025-11-23 02:32:42] 2025-11-23 07:32:24,915 | INFO     | mean y: 2892746.3237311384
[2025-11-23 02:32:42] 2025-11-23 07:32:24,915 | INFO     | intersect: -8528866751.776349
[2025-11-23 02:32:42] 2025-11-23 07:32:24,916 | INFO     | chi2: 3.662205316764276
[2025-11-23 02:32:42] 2025-11-23 07:32:24,916 | INFO     | current chi2=3.662205316764276 (change=2.5155242969244394 %)
[2025-11-23 02:32:42] 2025-11-23 07:32:24,917 | INFO     | left removable region: 20
[2025-11-23 02:32:42] 2025-11-23 07:32:24,917 | INFO     | sum of square deviations: 110046810440.27533
[2025-11-23 02:32:42] 2025-11-23 07:32:24,928 | INFO     | sum of deviations: 836696763362.3767
[2025-11-23 02:32:42] 2025-11-23 07:32:24,928 | INFO     | mean x: 1763860836.0974576
[2025-11-23 02:32:42] 2025-11-23 07:32:24,928 | INFO     | mean y: 2918504.820621469
[2025-11-23 02:32:42] 2025-11-23 07:32:24,928 | INFO     | intersect: -13407889556.584799
[2025-11-23 02:32:42] 2025-11-23 07:32:24,929 | INFO     | chi2: 0.11942542189785282
[2025-11-23 02:32:42] 2025-11-23 07:32:24,929 | INFO     | current memory leak: 7.60 B/s (using 708 data points, chi2=0.12)
[2025-11-23 02:32:42] 2025-11-23 07:32:24,929 | INFO     | could have reported an average CPU frequency of 2170 MHz (28 samples)
[2025-11-23 02:32:42] 2025-11-23 07:32:24,930 | INFO     | ..............................
[2025-11-23 02:32:42] 2025-11-23 07:32:24,930 | INFO     | . Timing measurements:
[2025-11-23 02:32:42] 2025-11-23 07:32:24,930 | INFO     | . get job = 0 s
[2025-11-23 02:32:42] 2025-11-23 07:32:24,930 | INFO     | . initial setup = 2 s
[2025-11-23 02:32:42] 2025-11-23 07:32:24,930 | INFO     | . payload setup = 8 s
[2025-11-23 02:32:42] 2025-11-23 07:32:24,930 | INFO     | . stage-in = 0 s
[2025-11-23 02:32:42] 2025-11-23 07:32:24,930 | INFO     | . payload execution = 45080 s
[2025-11-23 02:32:42] 2025-11-23 07:32:24,930 | INFO     | . stage-out = 3 s
[2025-11-23 02:32:42] 2025-11-23 07:32:24,931 | INFO     | . log creation = 0 s
[2025-11-23 02:32:42] 2025-11-23 07:32:24,931 | INFO     | ..............................
[2025-11-23 02:32:42] 2025-11-23 07:32:25,332 | INFO     | time since job start (45124s) is within the limit (172800.0s)
[2025-11-23 02:32:42] 2025-11-23 07:32:25,461 | INFO     | 
[2025-11-23 02:32:42] 2025-11-23 07:32:25,462 | INFO     | job summary report
[2025-11-23 02:32:42] 2025-11-23 07:32:25,462 | INFO     | --------------------------------------------------
[2025-11-23 02:32:42] 2025-11-23 07:32:25,462 | INFO     | PanDA job id: 6895328155
[2025-11-23 02:32:42] 2025-11-23 07:32:25,462 | INFO     | task id: 47556137
[2025-11-23 02:32:42] 2025-11-23 07:32:25,462 | INFO     | errors: (none)
[2025-11-23 02:32:42] 2025-11-23 07:32:25,462 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 02:32:42] 2025-11-23 07:32:25,463 | INFO     | pilot state: finished 
[2025-11-23 02:32:42] 2025-11-23 07:32:25,463 | INFO     | transexitcode: 0
[2025-11-23 02:32:42] 2025-11-23 07:32:25,463 | INFO     | exeerrorcode: 0
[2025-11-23 02:32:42] 2025-11-23 07:32:25,463 | INFO     | exeerrordiag: 
[2025-11-23 02:32:42] 2025-11-23 07:32:25,463 | INFO     | exitcode: 0
[2025-11-23 02:32:42] 2025-11-23 07:32:25,463 | INFO     | exitmsg: OK
[2025-11-23 02:32:42] 2025-11-23 07:32:25,464 | INFO     | cpuconsumptiontime: 348622 s
[2025-11-23 02:32:42] 2025-11-23 07:32:25,464 | INFO     | nevents: 1000
[2025-11-23 02:32:42] 2025-11-23 07:32:25,464 | INFO     | neventsw: 0
[2025-11-23 02:32:42] 2025-11-23 07:32:25,464 | INFO     | pid: 25132
[2025-11-23 02:32:42] 2025-11-23 07:32:25,464 | INFO     | pgrp: 25132
[2025-11-23 02:32:42] 2025-11-23 07:32:25,465 | INFO     | corecount: 8
[2025-11-23 02:32:42] 2025-11-23 07:32:25,465 | INFO     | event service: False
[2025-11-23 02:32:42] 2025-11-23 07:32:25,465 | INFO     | sizes: {0: 2298576, 1: 2298831, 6: 2299093, 12: 2299121, 45093: 2345101, 45098: 2354095, 45099: 2354279, 45107: 2354525}
[2025-11-23 02:32:42] 2025-11-23 07:32:25,465 | INFO     | --------------------------------------------------
[2025-11-23 02:32:42] 2025-11-23 07:32:25,465 | INFO     | 
[2025-11-23 02:32:42] 2025-11-23 07:32:25,465 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 02:32:42] 2025-11-23 07:32:25,495 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 02:32:42] 2025-11-23 07:32:25,495 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 02:32:42] 2025-11-23 07:32:25,495 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 02:32:42] 2025-11-23 07:32:25,496 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 02:32:42] 2025-11-23 07:32:25,496 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 02:32:42] 2025-11-23 07:32:25,496 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 02:32:42] 2025-11-23 07:32:25,496 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 02:32:42] 2025-11-23 07:32:25,496 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 02:32:42] 2025-11-23 07:32:25,496 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 02:32:42] 2025-11-23 07:32:25,497 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 02:32:42] 2025-11-23 07:32:25,497 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 02:32:42] 2025-11-23 07:32:25,497 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 02:32:42] 2025-11-23 07:32:25,497 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 02:32:42] 2025-11-23 07:32:25,497 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 02:32:42] 2025-11-23 07:32:25,497 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 02:32:42] 2025-11-23 07:32:25,498 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 02:32:42] 2025-11-23 07:32:25,498 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 02:32:42] 2025-11-23 07:32:25,498 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 02:32:42] 2025-11-23 07:32:25,498 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 02:32:42] 2025-11-23 07:32:25,498 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 02:32:42] 2025-11-23 07:32:25,499 | INFO     | job 6895328155 has completed (purged errors)
[2025-11-23 02:32:42] 2025-11-23 07:32:25,499 | INFO     | overall cleanup function is called
[2025-11-23 02:32:42] 2025-11-23 07:32:26,448 | INFO     | PID=18688 has CPU usage=14.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-23 02:32:42] 2025-11-23 07:32:26,514 | INFO     | --- collectZombieJob: --- 10, [25132]
[2025-11-23 02:32:42] 2025-11-23 07:32:26,514 | INFO     | zombie collector waiting for pid 25132
[2025-11-23 02:32:42] 2025-11-23 07:32:26,514 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 02:32:42] 2025-11-23 07:32:26,515 | INFO     | collected zombie processes
[2025-11-23 02:32:42] 2025-11-23 07:32:26,515 | INFO     | will attempt to kill all subprocesses of pid=25132
[2025-11-23 02:32:42] 2025-11-23 07:32:26,599 | INFO     | process IDs to be killed: [25132] (in reverse order)
[2025-11-23 02:32:42] 2025-11-23 07:32:26,661 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 02:32:42] 2025-11-23 07:32:26,662 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 02:32:42] 2025-11-23 07:32:26,666 | INFO     | did not find any defunct processes belonging to 25132
[2025-11-23 02:32:42] 2025-11-23 07:32:26,669 | INFO     | did not find any defunct processes belonging to 25132
[2025-11-23 02:32:42] 2025-11-23 07:32:26,672 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 02:32:42] 2025-11-23 07:32:26,672 | INFO     | ready for new job
[2025-11-23 02:32:42] 2025-11-23 07:32:26,672 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 02:32:42] 2025-11-23 07:32:26,676 | INFO     | ***************************************
[2025-11-23 02:32:42] 2025-11-23 07:32:26,676 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 02:32:42] 2025-11-23 07:32:26,676 | INFO     | ***************************************
[2025-11-23 02:32:42] 2025-11-23 07:32:26,676 | INFO     | 
[2025-11-23 02:32:42] 2025-11-23 07:32:26,677 | INFO     | architecture information:
[2025-11-23 02:32:42] 2025-11-23 07:32:26,677 | INFO     | executing command: cat /etc/os-release
[2025-11-23 02:32:42] 2025-11-23 07:32:26,696 | INFO     | cat /etc/os-release:
[2025-11-23 02:32:42] NAME="CentOS Linux"
[2025-11-23 02:32:42] VERSION="7 (Core)"
[2025-11-23 02:32:42] ID="centos"
[2025-11-23 02:32:42] ID_LIKE="rhel fedora"
[2025-11-23 02:32:42] VERSION_ID="7"
[2025-11-23 02:32:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 02:32:42] ANSI_COLOR="0;31"
[2025-11-23 02:32:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 02:32:42] HOME_URL="https://www.centos.org/"
[2025-11-23 02:32:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 02:32:42] 
[2025-11-23 02:32:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 02:32:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 02:32:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 02:32:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 02:32:42] 
[2025-11-23 02:32:42] 2025-11-23 07:32:26,697 | INFO     | ***************************************
[2025-11-23 02:32:42] 2025-11-23 07:32:27,200 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 02:32:42] 2025-11-23 07:32:27,220 | INFO     | sufficient remaining disk space (17487101952 B)
[2025-11-23 02:32:42] 2025-11-23 07:32:27,221 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 02:32:42] 2025-11-23 07:32:27,221 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 02:32:42] 2025-11-23 07:32:27,221 | INFO     | update_server=False
[2025-11-23 02:32:42] 2025-11-23 07:32:27,222 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 02:32:42] 2025-11-23 07:32:27,222 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-23 02:32:42] 2025-11-23 07:32:27,222 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 02:32:42] 2025-11-23 07:32:27,222 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 02:32:42] 2025-11-23 07:32:27,223 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 02:32:42] 2025-11-23 07:32:27,533 | INFO     | all payload control threads have been joined
[2025-11-23 02:32:42] 2025-11-23 07:32:27,817 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 02:32:42] 2025-11-23 07:32:27,918 | INFO     | all data control threads have been joined
[2025-11-23 02:32:42] 2025-11-23 07:32:27,935 | INFO     | all job control threads have been joined
[2025-11-23 02:32:42] 2025-11-23 07:32:28,211 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 02:32:42] 2025-11-23 07:32:28,212 | INFO     | aborting loop
[2025-11-23 02:32:42] 2025-11-23 07:32:28,227 | INFO     | [job] retrieve thread has finished
[2025-11-23 02:32:42] 2025-11-23 07:32:28,253 | INFO     | [job] validate thread has finished
[2025-11-23 02:32:42] 2025-11-23 07:32:28,499 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 02:32:42] 2025-11-23 07:32:28,539 | INFO     | [payload] control thread has finished
[2025-11-23 02:32:42] 2025-11-23 07:32:28,688 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 02:32:42] 2025-11-23 07:32:28,748 | INFO     | [payload] failed_post thread has finished
[2025-11-23 02:32:42] 2025-11-23 07:32:28,772 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 02:32:42] 2025-11-23 07:32:28,900 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 02:32:42] 2025-11-23 07:32:28,923 | INFO     | [data] control thread has finished
[2025-11-23 02:32:42] 2025-11-23 07:32:28,941 | INFO     | [job] control thread has finished
[2025-11-23 02:32:42] 2025-11-23 07:32:28,982 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 02:32:42] 2025-11-23 07:32:29,217 | INFO     | [job] job monitor thread has finished
[2025-11-23 02:32:42] 2025-11-23 07:32:29,547 | INFO     | [data] copytool_in thread has finished
[2025-11-23 02:32:42] 2025-11-23 07:32:29,679 | INFO     | [payload] validate_post thread has finished
[2025-11-23 02:32:42] 2025-11-23 07:32:30,032 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 02:32:42] 2025-11-23 07:32:30,693 | INFO     | [data] copytool_out thread has finished
[2025-11-23 02:32:42] 2025-11-23 07:32:31,038 | INFO     | [job] queue monitor thread has finished
[2025-11-23 02:32:42] 2025-11-23 07:32:31,823 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 02:32:42] 2025-11-23 07:32:35,359 | INFO     | [monitor] cgroup control has ended
[2025-11-23 02:32:42] 2025-11-23 07:32:37,292 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139741669300032)>', '<ExcThread(monitor, started 139740561000192)>']
[2025-11-23 02:32:42] 2025-11-23 07:32:38,279 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 02:32:42] 2025-11-23 07:32:38,280 | INFO     | [monitor] control thread has ended
[2025-11-23 02:32:42] 2025-11-23 07:32:42,318 | INFO     | all workflow threads have been joined
[2025-11-23 02:32:42] 2025-11-23 07:32:42,318 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 02:32:42] 2025-11-23 07:32:42,319 | INFO     | traces error code: 0
[2025-11-23 02:32:42] 2025-11-23 07:32:42,319 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 02:32:42] 2025-11-23 07:32:42,426 [wrapper] ==== pilot stdout END ====
[2025-11-23 02:32:42] 2025-11-23 07:32:42,430 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 02:32:42] 2025-11-23 07:32:42,435 [wrapper] pilotpid: 18688
[2025-11-23 02:32:42] 2025-11-23 07:32:42,439 [wrapper] Pilot exit status: 0
[2025-11-23 02:32:42] 2025-11-23 07:32:42,456 [wrapper] pandaids: 6895328155 6895328155
[2025-11-23 02:32:42] 2025-11-23 07:32:42,499 [wrapper] cleanup supervisor_pilot 10195 18689
[2025-11-23 02:32:42] 2025-11-23 07:32:42,503 [wrapper] Test setup, not cleaning
[2025-11-23 02:32:42] 2025-11-23 07:32:42,508 [wrapper] apfmon messages muted
[2025-11-23 02:32:42] 2025-11-23 07:32:42,513 [wrapper] ==== wrapper stdout END ====
[2025-11-23 02:32:42] 2025-11-23 07:32:42,517 [wrapper] ==== wrapper stderr END ====
[2025-11-23 02:32:42]  *** Error codes and diagnostics ***
[2025-11-23 02:32:42]     "exeErrorCode": 0,
[2025-11-23 02:32:42]     "exeErrorDiag": "",
[2025-11-23 02:32:42]     "pilotErrorCode": 0,
[2025-11-23 02:32:42]     "pilotErrorDiag": "",
[2025-11-23 02:32:42]  *** Listing of results directory ***
[2025-11-23 02:32:42] total 1702088
[2025-11-23 02:32:42] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-23 02:32:42] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 11:16 pilot3.tar.gz
[2025-11-23 02:32:42] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 11:34 queuedata.json
[2025-11-23 02:32:42] -rwx------ 1 boincer umatlas     36292 Nov 21 11:35 runpilot2-wrapper.sh
[2025-11-23 02:32:42] -rw-r--r-- 1 boincer umatlas       100 Nov 22 09:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 02:32:42] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 09:43 run_atlas
[2025-11-23 02:32:42] -rw-r--r-- 1 boincer umatlas       105 Nov 22 09:43 job.xml
[2025-11-23 02:32:42] -rw-r--r-- 3 boincer umatlas 407655610 Nov 22 09:44 EVNT.47483658._000066.pool.root.1
[2025-11-23 02:32:42] -rw-r--r-- 3 boincer umatlas 407655610 Nov 22 09:44 ATLAS.root_0
[2025-11-23 02:32:42] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 09:44 start_atlas.sh
[2025-11-23 02:32:42] drwxrwx--x 2 boincer umatlas      4096 Nov 22 09:44 shared
[2025-11-23 02:32:42] -rw-r--r-- 2 boincer umatlas    590097 Nov 22 09:44 input.tar.gz
[2025-11-23 02:32:42] -rw-r--r-- 1 boincer umatlas         0 Nov 22 09:44 boinc_lockfile
[2025-11-23 02:32:42] -rw-r--r-- 1 boincer umatlas      2784 Nov 22 14:00 pandaJob.out
[2025-11-23 02:32:42] -rw------- 1 boincer umatlas        57 Nov 22 14:00 setup.sh.local
[2025-11-23 02:32:42] -rw------- 1 boincer umatlas    989784 Nov 22 14:00 agis_schedconf.cvmfs.json
[2025-11-23 02:32:42] -rw-r--r-- 1 boincer umatlas       533 Nov 23 02:19 boinc_task_state.xml
[2025-11-23 02:32:42] -rw-r--r-- 1 boincer umatlas      5912 Nov 23 02:29 init_data.xml
[2025-11-23 02:32:42] -rw------- 1 boincer umatlas 907254955 Nov 23 02:31 HITS.47556137._000654.pool.root.1
[2025-11-23 02:32:42] -rw------- 1 boincer umatlas      1062 Nov 23 02:32 memory_monitor_summary.json
[2025-11-23 02:32:42] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 02:32 boinc_mmap_file
[2025-11-23 02:32:42] -rw-r--r-- 1 boincer umatlas        29 Nov 23 02:32 wrapper_checkpoint.txt
[2025-11-23 02:32:42] -rw------- 1 boincer umatlas   1526164 Nov 23 02:32 agis_ddmendpoints.agis.ALL.json
[2025-11-23 02:32:42] -rw------- 1 boincer umatlas   1987527 Nov 23 02:32 log.47556137._000654.job.log.tgz.1
[2025-11-23 02:32:42] -rw------- 1 boincer umatlas        95 Nov 23 02:32 pilot_heartbeat.json
[2025-11-23 02:32:42] -rw------- 1 boincer umatlas      8654 Nov 23 02:32 heartbeat.json
[2025-11-23 02:32:42] -rw------- 1 boincer umatlas      4552 Nov 23 02:32 pilotlog.txt
[2025-11-23 02:32:42] -rw------- 1 boincer umatlas   6231880 Nov 23 02:32 log.47556137._000654.job.log.1
[2025-11-23 02:32:42] -rw------- 1 boincer umatlas       353 Nov 23 02:32 output.list
[2025-11-23 02:32:42] -rw-r--r-- 1 boincer umatlas       620 Nov 23 02:32 runtime_log
[2025-11-23 02:32:42] -rw------- 1 boincer umatlas   8243200 Nov 23 02:32 result.tar.gz
[2025-11-23 02:32:42] -rw------- 1 boincer umatlas       793 Nov 23 02:32 SaCNDmaHjg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmcYJKDmSsqv6m.diag
[2025-11-23 02:32:42] -rw-r--r-- 1 boincer umatlas      9428 Nov 23 02:32 runtime_log.err
[2025-11-23 02:32:42] -rw-r--r-- 1 boincer umatlas     23480 Nov 23 02:32 stderr.txt
[2025-11-23 02:32:42] HITS file was successfully produced:
[2025-11-23 02:32:42] -rw------- 1 boincer umatlas 907254955 Nov 23 02:31 shared/HITS.pool.root.1
[2025-11-23 02:32:42]  *** Contents of shared directory: ***
[2025-11-23 02:32:42] total 1292748
[2025-11-23 02:32:42] -rw-r--r-- 3 boincer umatlas 407655610 Nov 22 09:44 ATLAS.root_0
[2025-11-23 02:32:42] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 09:44 start_atlas.sh
[2025-11-23 02:32:42] -rw-r--r-- 2 boincer umatlas    590097 Nov 22 09:44 input.tar.gz
[2025-11-23 02:32:42] -rw------- 1 boincer umatlas 907254955 Nov 23 02:31 HITS.pool.root.1
[2025-11-23 02:32:42] -rw------- 1 boincer umatlas   8243200 Nov 23 02:32 result.tar.gz
02:32:43 (14957): run_atlas exited; CPU time 344759.304391
02:32:43 (14957): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN